UCNE: SOX1_Alice
(id = 11646)

General information about the entry
Entry location:intron
Position:chr13:111552824-111553096
Length:273 nt
Sequence:SOX1_Alice.fasta
Overlapping gene:ANKRD10
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): SOX1_cluster: chr13:111552824-112063548
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr1:143509121-143509393        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr8:11623645-11623913   Identity: 94.12%    E-value: 1.3e-59   Bit-score: 235.3

Armadillo (dasNov1):
Region #1:   scaffold_63630:3594-3866   Identity: 98.53%    E-value: 1.5e-64   Bit-score: 251.9
Region #2:   scaffold_27439:14498-14627   Identity: 83.97%    E-value: 8.7e-16   Bit-score: 89.8

Opossum (monDom5):
Region #1:   chr7:81457160-81457431   Identity: 97.79%    E-value: 2.7e-65   Bit-score: 254.6

Platypus (ornAna1):
Region #1:   Ultra336:8634772-8635043   Identity: 97.06%    E-value: 6.6e-65   Bit-score: 252.4

Zebra_finch (taeGut1):
Region #1:   chr1:24809148-24809419   Identity: 98.16%    E-value: 4.5e-65   Bit-score: 252.3

Lizard (anoCar2):
Region #1:   chr3:104574378-104574650   Identity: 96.7%    E-value: 8.9e-59   Bit-score: 231.9

Painted_turtle (chrPic1):
Region #1:   JH584740:93347-93618   Identity: 98.16%    E-value: 1e-64   Bit-score: 252.2

Xenopus (xenTro3):
Region #1:   GL172678:1124044-1124315   Identity: 91.58%    E-value: 9.2e-53   Bit-score: 211.7

Fugu (fr2):
Region #1:   chrUn:100211884-100212118   Identity: 76.61%    E-value: 2.6e-32   Bit-score: 138.4

Medaka (oryLat2):
Region #1:   chr21:28425995-28426208   Identity: 78.67%    E-value: 2e-31   Bit-score: 135.5

Stickleback (gasAcu1):
Region #1:   chrXVI:7794481-7794720   Identity: 75.7%    E-value: 9e-32   Bit-score: 136.8

Tetraodon (tetNig2):
Zebrafish (danRer7):
Region #1:   chr9:9010074-9010307   Identity: 76.27%    E-value: 4.8e-27   Bit-score: 121.8
Region #2:   chr1:28088357-28088558   Identity: 65.62%    E-value: 1.2e-09   Bit-score: 64.1

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):