UCNE: SOX1_Apollo
(id = 11651)

General information about the entry
Entry location:intergenic
Position:chr13:112037538-112037872
Length:335 nt
Sequence:SOX1_Apollo.fasta
Upstream gene:C13orf16
Downstream gene:SOX1
Paralogs:chr3:180774153-180774425: SOX2_Apollo;
Ultraconserved Genomic Regulatory Block (UGRB): SOX1_cluster: chr13:111552824-112063548
External links:
CONDOR database:CRCNE00001922; CRCNE00001926; CRCNE00001900;
VISTA Enhancer Browser:hs621;
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr1:143697313-143697647        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr8:11896432-11896745   Identity: 94.27%    E-value: 5.2e-47   Bit-score: 193.7
This UCNE has 1 paralogous region in Mouse

Armadillo (dasNov1):
This UCNE has 1 paralogous region in Armadillo

Opossum (monDom5):
Region #1:   chr7:80720502-80720836   Identity: 96.72%    E-value: 7e-46   Bit-score: 190.4
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Ultra336:8829457-8829786   Identity: 96.67%    E-value: 1.7e-55   Bit-score: 221.4
This UCNE has 1 paralogous region in Platypus

Zebra_finch (taeGut1):
Region #1:   chr1:25009786-25010120   Identity: 96.72%    E-value: 3.7e-54   Bit-score: 216.3
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:104816439-104816775   Identity: 91.39%    E-value: 1.3e-50   Bit-score: 205
This UCNE has 1 paralogous region in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584840:318069-318403   Identity: 97.31%    E-value: 3.1e-52   Bit-score: 211
This UCNE has 1 paralogous region in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172678:978080-978395   Identity: 87.66%    E-value: 1.4e-39   Bit-score: 168.2
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
This UCNE has 1 paralogous region in Fugu

Medaka (oryLat2):
This UCNE has 1 paralogous region in Medaka

Stickleback (gasAcu1):
This UCNE has 1 paralogous region in Stickleback

Tetraodon (tetNig2):
This UCNE has 1 paralogous region in Tetraodon

Zebrafish (danRer7):
Region #1:   chr9:22602071-22602398   Identity: 76.83%    E-value: 3.9e-22   Bit-score: 105.8
Region #2:   chr1:46532777-46533079   Identity: 72.55%    E-value: 3.6e-15   Bit-score: 82.7
This UCNE has 1 paralogous region in Zebrafish

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):