UCNE: SOX1_Cameron
(id = 11653)

General information about the entry
Entry location:intergenic
Position:chr13:112063121-112063548
Length:428 nt
Sequence:SOX1_Cameron.fasta
Upstream gene:C13orf16
Downstream gene:SOX1
Paralogs:chr3:180892531-180892791: SOX2_Cameron;
Ultraconserved Genomic Regulatory Block (UGRB): SOX1_cluster: chr13:111552824-112063548
External links:
CONDOR database:CRCNE00001901; CRCNE00001865; CRCNE00001927; CRCNE00001866; CRCNE00001928;
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr1:143717309-143717736        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr8:11912575-11913000   Identity: 96.25%    E-value: 2e-87   Bit-score: 328.3
This UCNE has 1 paralogous region in Mouse

Armadillo (dasNov1):
This UCNE has 1 paralogous region in Armadillo

Opossum (monDom5):
Region #1:   chr7:80671672-80672102   Identity: 96.75%    E-value: 1.1e-79   Bit-score: 303
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Ultra336:8843376-8843803   Identity: 97.43%    E-value: 2.7e-89   Bit-score: 334.1
This UCNE has 1 paralogous region in Platypus

Zebra_finch (taeGut1):
Region #1:   chr1:25032389-25032815   Identity: 97.42%    E-value: 1.6e-86   Bit-score: 324.2
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:104836951-104837379   Identity: 94.87%    E-value: 3.5e-87   Bit-score: 326.9
This UCNE has 1 paralogous region in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584840:369525-369826   Identity: 98.68%    E-value: 3.2e-60   Bit-score: 237.9
This UCNE has 1 paralogous region in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172678:973497-973921   Identity: 84.15%    E-value: 6.5e-59   Bit-score: 232.8
Region #2:   GL172678:888703-889127   Identity: 84.15%    E-value: 6.5e-59   Bit-score: 232.8
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Region #1:   chrUn:100801545-100801903   Identity: 69.81%    E-value: 3.2e-32   Bit-score: 138.7
Region #2:   chrUn:293811167-293811512   Identity: 65.8%    E-value: 4.5e-18   Bit-score: 91.7

Medaka (oryLat2):
Region #1:   chr21:11474811-11475159   Identity: 70.74%    E-value: 2e-28   Bit-score: 126.2

Stickleback (gasAcu1):
Region #1:   chrXVI:7164066-7164424   Identity: 69.53%    E-value: 1.6e-30   Bit-score: 133.3
Region #2:   chrI:22946351-22946735   Identity: 69.25%    E-value: 1.6e-28   Bit-score: 126.6

Tetraodon (tetNig2):
Region #1:   chr2:11173517-11173926   Identity: 67.87%    E-value: 2.2e-33   Bit-score: 142.5
Region #2:   chr3:6704425-6704777   Identity: 63.69%    E-value: 1.7e-14   Bit-score: 79.8

Zebrafish (danRer7):
Region #1:   chr9:22602906-22603256   Identity: 77.9%    E-value: 5.1e-38   Bit-score: 158.9
Region #2:   chr1:46535788-46536136   Identity: 74.64%    E-value: 2.7e-33   Bit-score: 143.2

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):