UCNE: LHX1_Alice
(id = 16109)

General information about the entry
Entry location:intergenic
Position:chr17:35012232-35012516
Length:285 nt
Sequence:LHX1_Alice.fasta
Upstream gene:MRM1
Downstream gene:LHX1
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): LHX1_cluster: chr17:35012232-35590289
External links:
CONDOR database:
VISTA Enhancer Browser:hs362;
UCE (Bejerano et al. 2004):uc.410 http://users.soe.ucsc.edu/~jill/ultra.html
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr19:8170720-8171001        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr11:84766116-84766400   Identity: 99.65%    E-value: 1.4e-67   Bit-score: 261.8

Armadillo (dasNov1):
Region #1:   scaffold_38437:401-685   Identity: 98.25%    E-value: 1.8e-59   Bit-score: 235.1

Opossum (monDom5):
Region #1:   chr2:185325405-185325688   Identity: 96.48%    E-value: 3.5e-59   Bit-score: 234.3

Platypus (ornAna1):
Region #1:   Ultra9:1235577-1235854   Identity: 94.64%    E-value: 2.3e-59   Bit-score: 234.1

Zebra_finch (taeGut1):
Region #1:   chr19:9932644-9932921   Identity: 97.5%    E-value: 1.1e-62   Bit-score: 244.4

Lizard (anoCar2):
Region #1:   chrUn_GL343439:717220-717498   Identity: 87.9%    E-value: 2.7e-51   Bit-score: 207.1
This UCNE has 1 paralogous region in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584693:2515282-2515559   Identity: 97.14%    E-value: 2e-59   Bit-score: 234.7

Xenopus (xenTro3):
Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):