UCNE: LHX1_Lolita
(id = 16147)

General information about the entry
Entry location:intron
Position:chr17:35336182-35336736
Length:555 nt
Sequence:LHX1_Lolita.fasta
Overlapping gene:AATF
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): LHX1_cluster: chr17:35012232-35590289
External links:
CONDOR database:CRCNE00006526; CRCNE00006527; CRCNE00006528;
VISTA Enhancer Browser:hs364;
UCE (Bejerano et al. 2004):uc.412 http://users.soe.ucsc.edu/~jill/ultra.html
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr19:8370628-8371183        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr11:84481603-84482157   Identity: 99.46%    E-value: 9.5e-129   Bit-score: 466

Armadillo (dasNov1):
Region #1:   scaffold_36937:6537-6995   Identity: 99.78%    E-value: 8.6e-92   Bit-score: 343.3

Opossum (monDom5):
Region #1:   chr2:185840712-185841266   Identity: 99.82%    E-value: 1.8e-114   Bit-score: 419

Platypus (ornAna1):
Region #1:   Ultra9:931961-932515   Identity: 99.28%    E-value: 2.8e-129   Bit-score: 467.3

Zebra_finch (taeGut1):
Region #1:   chrZ:67897149-67897703   Identity: 96.4%    E-value: 3.4e-117   Bit-score: 426.5

Lizard (anoCar2):
Region #1:   chrUn_GL343439:315329-315881   Identity: 94.21%    E-value: 2.3e-117   Bit-score: 427.6

Painted_turtle (chrPic1):
Region #1:   JH584693:3056276-3056831   Identity: 96.94%    E-value: 2.3e-118   Bit-score: 431.4

Xenopus (xenTro3):
Region #1:   GL173152:481692-482245   Identity: 92.96%    E-value: 3e-106   Bit-score: 390.4

Fugu (fr2):
Region #1:   chrUn:24074558-24074663   Identity: 78.5%    E-value: 1.5e-09   Bit-score: 63.8
Region #2:   chrUn:24074716-24074873   Identity: 65.27%    E-value: 2.2e-09   Bit-score: 63.2

Medaka (oryLat2):
Region #1:   chr14:18223018-18223356   Identity: 68.33%    E-value: 8.3e-27   Bit-score: 121.2
Region #2:   scaffold4407:4062-4203   Identity: 83.1%    E-value: 1.8e-17   Bit-score: 90.2

Stickleback (gasAcu1):
Region #1:   chrI:19028675-19028825   Identity: 80%    E-value: 3.3e-17   Bit-score: 89.4
Region #2:   chrVII:16335752-16336099   Identity: 61.82%    E-value: 9.9e-15   Bit-score: 81.2
Region #3:   chrI:19028230-19028359   Identity: 73.08%    E-value: 1.1e-10   Bit-score: 67.7

Tetraodon (tetNig2):
Region #1:   chr7:6911645-6912069   Identity: 60.65%    E-value: 2.6e-19   Bit-score: 96.2
Region #2:   chr16:8767186-8767327   Identity: 82.07%    E-value: 1.8e-17   Bit-score: 90.1

Zebrafish (danRer7):
Region #1:   chr15:27038105-27038683   Identity: 67.86%    E-value: 6.4e-43   Bit-score: 175.6
Region #2:   chr5:57694230-57694418   Identity: 65.82%    E-value: 4.2e-08   Bit-score: 59.9

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):