UCNE: HOXD_Malcolm
(id = 21297)

General information about the entry
Entry location:intergenic
Position:chr2:176940301-176940780
Length:480 nt
Sequence:HOXD_Malcolm.fasta
Upstream gene:KIAA1715
Downstream gene:EVX2
Paralogs:chr7:27289199-27289303
Ultraconserved Genomic Regulatory Block (UGRB): HOXD_cluster: chr2:175967909-178084536
External links:
CONDOR database:CRCNE00010526;
VISTA Enhancer Browser:hs246;
UCE (Bejerano et al. 2004):uc.108 http://users.soe.ucsc.edu/~jill/ultra.html
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr7:17450631-17451106        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr2:74651090-74651585   Identity: 96.17%    E-value: 6.8e-109   Bit-score: 399.8
This UCNE has 2 paralogous regions in Mouse

Armadillo (dasNov1):
Region #1:   scaffold_1057:124932-125411   Identity: 98.96%    E-value: 1.3e-104   Bit-score: 385.7
This UCNE has 1 paralogous region in Armadillo

Opossum (monDom5):
Region #1:   chr4:187412906-187413381   Identity: 98.33%    E-value: 1.1e-103   Bit-score: 382.9
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Contig21569:4705-5181   Identity: 98.12%    E-value: 1.2e-112   Bit-score: 411.8
This UCNE has 2 paralogous regions in Platypus

Zebra_finch (taeGut1):
Region #1:   chr7:17009206-17009680   Identity: 97.08%    E-value: 8.8e-104   Bit-score: 381.7
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chrUn_GL343356:645669-646147   Identity: 96.26%    E-value: 5.5e-108   Bit-score: 396.2
This UCNE has 1 paralogous region in Lizard

Painted_turtle (chrPic1):
This UCNE has 2 paralogous regions in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172799:667493-667909   Identity: 95.68%    E-value: 1.4e-85   Bit-score: 321.5
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Region #1:   chrUn:173269531-173270000   Identity: 91.02%    E-value: 1.8e-113   Bit-score: 408.8
Region #2:   chrUn:302309342-302309425   Identity: 85.71%    E-value: 2.4e-11   Bit-score: 69.5

Medaka (oryLat2):
Region #1:   scaffold4918:2472-2899   Identity: 93.49%    E-value: 2.3e-102   Bit-score: 372
Region #2:   chr11:10574125-10574202   Identity: 80.77%    E-value: 3.9e-07   Bit-score: 55.6

Stickleback (gasAcu1):
Region #1:   chrXVI:9842410-9842879   Identity: 92.48%    E-value: 2.7e-114   Bit-score: 411.7
This UCNE has 1 paralogous region in Stickleback

Tetraodon (tetNig2):
Region #1:   chr2:13455514-13455967   Identity: 91.89%    E-value: 8.4e-111   Bit-score: 399.9
Region #2:   chr21:2992265-2992348   Identity: 85.71%    E-value: 2.1e-11   Bit-score: 69.7

Zebrafish (danRer7):
Region #1:   chr9:1998782-1999253   Identity: 91.42%    E-value: 2.6e-93   Bit-score: 342.8
Region #2:   chr19:19182341-19182425   Identity: 81.18%    E-value: 2e-06   Bit-score: 54.2

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):