UCNE: HOXD_Trevor
(id = 21381)

General information about the entry
Entry location:intergenic
Position:chr2:178023640-178023865
Length:226 nt
Sequence:HOXD_Trevor.fasta
Upstream gene:MTX2
Downstream gene:HNRNPA3
Paralogs:chr4:124776560-124776716
Ultraconserved Genomic Regulatory Block (UGRB): HOXD_cluster: chr2:175967909-178084536
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr7:16960668-16960894        Identity: >95%
This UCNE has 2 paralogous regions in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr2:75599208-75599433   Identity: 96.02%    E-value: 6.2e-35   Bit-score: 153

Armadillo (dasNov1):
Region #1:   scaffold_19658:31837-32061   Identity: 96.46%    E-value: 3e-30   Bit-score: 137.6

Opossum (monDom5):
Region #1:   chr4:188850610-188850831   Identity: 97.3%    E-value: 1.7e-28   Bit-score: 132.1

Platypus (ornAna1):
Region #1:   Ultra514:15450481-15450703   Identity: 94.22%    E-value: 2.6e-35   Bit-score: 153.8
This UCNE has 1 paralogous region in Platypus

Zebra_finch (taeGut1):
Region #1:   chr7:17518103-17518323   Identity: 97.3%    E-value: 4.7e-35   Bit-score: 152.3
This UCNE has 4 paralogous regions in Zebra_finch

Lizard (anoCar2):
Region #1:   chrUn_GL343411:597645-597865   Identity: 92.38%    E-value: 2e-25   Bit-score: 120.8

Painted_turtle (chrPic1):
Region #1:   JH584712:2829507-2829728   Identity: 96.4%    E-value: 5.7e-34   Bit-score: 149.8
This UCNE has 4 paralogous regions in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172799:69872-70081   Identity: 75.23%    E-value: 8.7e-15   Bit-score: 85.2

Fugu (fr2):
Medaka (oryLat2):
Stickleback (gasAcu1):
Tetraodon (tetNig2):
Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):