UCNE: SHOX2_Andrew
(id = 24706)

General information about the entry
Entry location:intergenic
Position:chr3:157776198-157776799
Length:602 nt
Sequence:SHOX2_Andrew.fasta
Upstream gene:C3orf55
Downstream gene:SHOX2
Paralogs:chrX:751583-751678
chrY:701583-701678
Ultraconserved Genomic Regulatory Block (UGRB): SHOX2_cluster: chr3:157574121-158246256
External links:
CONDOR database:CRCNE00005645; CRCNE00005644; CRCNE00005643;
VISTA Enhancer Browser:hs1251;
UCE (Bejerano et al. 2004):uc.130 http://users.soe.ucsc.edu/~jill/ultra.html
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:24184682-24185283        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr3:66935170-66935771   Identity: 98.17%    E-value: 8.2e-138   Bit-score: 496.2

Armadillo (dasNov1):
Region #1:   scaffold_59145:596-1197   Identity: 99%    E-value: 3.3e-134   Bit-score: 484.4
This UCNE has 1 paralogous region in Armadillo

Opossum (monDom5):
Region #1:   chr7:243819530-243820131   Identity: 97.01%    E-value: 5.7e-129   Bit-score: 467.2
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Contig13647:16521-17122   Identity: 98.67%    E-value: 4.1e-140   Bit-score: 503.4
This UCNE has 1 paralogous region in Platypus

Zebra_finch (taeGut1):
Region #1:   chr9:25945769-25946369   Identity: 97.67%    E-value: 1.4e-138   Bit-score: 497.6
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:14503437-14504039   Identity: 97.68%    E-value: 1.6e-147   Bit-score: 527.8
This UCNE has 1 paralogous region in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584515:4919566-4920167   Identity: 98.67%    E-value: 5e-138   Bit-score: 496.9
This UCNE has 1 paralogous region in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172686:1955861-1956458   Identity: 96.32%    E-value: 2.1e-129   Bit-score: 467.4
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Region #1:   chrUn:34501176-34501738   Identity: 74.82%    E-value: 5.2e-75   Bit-score: 281.3
Region #2:   chrUn:82107102-82107254   Identity: 70.78%    E-value: 2.3e-12   Bit-score: 73.2

Medaka (oryLat2):
Region #1:   chr13:14747154-14747745   Identity: 73.74%    E-value: 1.1e-68   Bit-score: 260.4
This UCNE has 1 paralogous region in Medaka

Stickleback (gasAcu1):
Region #1:   chrI:8816221-8816817   Identity: 74.37%    E-value: 1.3e-74   Bit-score: 280.2
This UCNE has 1 paralogous region in Stickleback

Tetraodon (tetNig2):
Region #1:   chr16:1110820-1111385   Identity: 74.38%    E-value: 2e-74   Bit-score: 279.4
Region #2:   chr2:9797286-9797438   Identity: 71.43%    E-value: 6.8e-13   Bit-score: 75

Zebrafish (danRer7):
Region #1:   chr15:2132289-2132685   Identity: 83.17%    E-value: 4.5e-57   Bit-score: 222.7
Region #2:   chr9:35679470-35679719   Identity: 65.08%    E-value: 7.8e-12   Bit-score: 72.4

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):