UCNE: SHOX2_Harper
(id = 24721)

General information about the entry
Entry location:intron
Position:chr3:158009969-158010191
Length:223 nt
Sequence:SHOX2_Harper.fasta
Overlapping gene:RSRC1
Paralogs:chrX:433506-433625
chrY:383506-383625
Ultraconserved Genomic Regulatory Block (UGRB): SHOX2_cluster: chr3:157574121-158246256
External links:
CONDOR database:CRCNE00005670;
VISTA Enhancer Browser:hs1254;
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr9:24110005-24110227        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr3:67171081-67171303   Identity: 98.21%    E-value: 6.4e-38   Bit-score: 162.9

Armadillo (dasNov1):
Region #1:   scaffold_48736:2265-2487   Identity: 97.76%    E-value: 1.6e-35   Bit-score: 155.1
Region #2:   scaffold_226735:1038-1217   Identity: 71.43%    E-value: 6.3e-09   Bit-score: 66.8

Opossum (monDom5):
Region #1:   chr7:243549541-243549760   Identity: 94.55%    E-value: 6.6e-31   Bit-score: 140
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Contig1000:24955-25177   Identity: 97.31%    E-value: 8.9e-41   Bit-score: 172
This UCNE has 1 paralogous region in Platypus

Zebra_finch (taeGut1):
Region #1:   chr9:25873137-25873358   Identity: 94.14%    E-value: 6.8e-36   Bit-score: 155.1
This UCNE has 2 paralogous regions in Zebra_finch

Lizard (anoCar2):
Region #1:   chr3:14337339-14337561   Identity: 94.62%    E-value: 7.5e-40   Bit-score: 168.7
This UCNE has 1 paralogous region in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584515:5084493-5084715   Identity: 97.31%    E-value: 1.1e-38   Bit-score: 165.4
This UCNE has 1 paralogous region in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172686:1854489-1854710   Identity: 86.04%    E-value: 7.4e-28   Bit-score: 128.6
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Region #1:   chrUn:34549617-34549799   Identity: 90.71%    E-value: 1.1e-37   Bit-score: 155.9
Region #2:   chrUn:82174197-82174348   Identity: 77.63%    E-value: 1.2e-18   Bit-score: 92.6

Medaka (oryLat2):
Region #1:   chr13:14829960-14830166   Identity: 85.58%    E-value: 2.9e-33   Bit-score: 141.4
Region #2:   chr21:8516457-8516605   Identity: 76.51%    E-value: 2.3e-15   Bit-score: 81.9

Stickleback (gasAcu1):
Region #1:   chrI:8762579-8762783   Identity: 86.89%    E-value: 2.3e-35   Bit-score: 148.4
Region #2:   chrXVI:3350820-3350968   Identity: 75.84%    E-value: 1.9e-15   Bit-score: 82.3

Tetraodon (tetNig2):
Region #1:   chrUn_random:74153199-74153406   Identity: 85.38%    E-value: 1.4e-37   Bit-score: 155.6

Zebrafish (danRer7):
Region #1:   chr15:2251144-2251320   Identity: 79.23%    E-value: 1.3e-14   Bit-score: 80.2
Region #2:   chr9:35531966-35532117   Identity: 73.68%    E-value: 1.4e-08   Bit-score: 60.2

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):