UCNE: HOXA_Jacob
(id = 31131)

General information about the entry
Entry location:intergenic
Position:chr7:27179781-27180066
Length:286 nt
Sequence:HOXA_Jacob.fasta
Upstream gene:HOXA4
Downstream gene:HOXA5
Paralogs:chr17:46667621-46667787
Ultraconserved Genomic Regulatory Block (UGRB): HOXA_cluster: chr7:26231439-27646322
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr2:32556548-32556833        Identity: >95%
This UCNE has 1 paralogous region in Chicken

Conservation in other species:
Mouse (mm10):
Region #1:   chr6:52200915-52201200   Identity: 98.95%    E-value: 1.8e-78   Bit-score: 298
This UCNE has 1 paralogous region in Mouse

Armadillo (dasNov1):
Region #1:   scaffold_4770:59189-59473   Identity: 91.93%    E-value: 3.5e-61   Bit-score: 240.7
This UCNE has 1 paralogous region in Armadillo

Opossum (monDom5):
Region #1:   chr8:297380909-297381194   Identity: 95.45%    E-value: 4.4e-68   Bit-score: 263.9
This UCNE has 1 paralogous region in Opossum

Platypus (ornAna1):
Region #1:   Ultra231:2272913-2273193   Identity: 97.86%    E-value: 3.3e-74   Bit-score: 283.4
This UCNE has 2 paralogous regions in Platypus

Zebra_finch (taeGut1):
Region #1:   chr2:52595197-52595477   Identity: 97.86%    E-value: 9.8e-73   Bit-score: 277.8
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chrUn_GL343275:1476051-1476336   Identity: 95.1%    E-value: 1e-72   Bit-score: 278.3
This UCNE has 2 paralogous regions in Lizard

Painted_turtle (chrPic1):
Region #1:   JH584682:615250-615530   Identity: 97.15%    E-value: 5.7e-71   Bit-score: 273
This UCNE has 2 paralogous regions in Painted_turtle

Xenopus (xenTro3):
Region #1:   GL172692:1435648-1435912   Identity: 88.76%    E-value: 9.2e-51   Bit-score: 205.1
This UCNE has 1 paralogous region in Xenopus

Fugu (fr2):
Region #1:   chrUn:43422542-43422814   Identity: 75.53%    E-value: 2.3e-40   Bit-score: 165.2
Region #2:   chrUn:302352489-302352651   Identity: 79.39%    E-value: 2.8e-24   Bit-score: 111.7
Region #3:   chrUn:135217727-135217806   Identity: 75.31%    E-value: 1.2e-05   Bit-score: 49.8
This UCNE has 2 paralogous regions in Fugu

Medaka (oryLat2):
Region #1:   chr11:10524035-10524278   Identity: 78.49%    E-value: 9.4e-37   Bit-score: 153.3
This UCNE has 2 paralogous regions in Medaka

Stickleback (gasAcu1):
Region #1:   chrX:9888388-9888655   Identity: 77.26%    E-value: 3.5e-42   Bit-score: 171.4
Region #2:   chrXII:11640074-11640153   Identity: 74.07%    E-value: 6.3e-05   Bit-score: 47.7
This UCNE has 2 paralogous regions in Stickleback

Tetraodon (tetNig2):
Region #1:   chr21:3039811-3040069   Identity: 75.75%    E-value: 3.8e-38   Bit-score: 157.8
Region #2:   chr9:4251391-4251544   Identity: 63.92%    E-value: 3.7e-05   Bit-score: 48.2
This UCNE has 2 paralogous regions in Tetraodon

Zebrafish (danRer7):
Region #1:   chr19:19227705-19227950   Identity: 68.63%    E-value: 5.6e-20   Bit-score: 98.4
This UCNE has 1 paralogous region in Zebrafish

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):