UCNE: chr1_Trystan
(id = 4901)

General information about the entry
Entry location:UTR
Position:chr1:112255524-112255757
Length:234 nt
Sequence:chr1_Trystan.fasta
Overlapping gene:RAP1A
Paralogs:chr14:74950661-74950869
chr16:30182870-30182966
chr17:26770375-26770584
chr20:48558439-48558517
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr26:3081000-3081252        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr3:105728262-105728496   Identity: 96.61%    E-value: 4.1e-32   Bit-score: 143.7
This UCNE has 1 paralogous region in Mouse

Armadillo (dasNov1):
Region #1:   scaffold_11400:12870-13083   Identity: 94.86%    E-value: 1.2e-23   Bit-score: 115.8
Region #2:   scaffold_47750:9391-9602   Identity: 90.65%    E-value: 3.8e-20   Bit-score: 104.1
Region #3:   scaffold_149413:4593-4806   Identity: 90.19%    E-value: 4.2e-20   Bit-score: 104
Region #4:   scaffold_19185:17100-17305   Identity: 86.51%    E-value: 7.1e-17   Bit-score: 93.2
Region #5:   scaffold_29814:3417-3617   Identity: 85.98%    E-value: 9.1e-17   Bit-score: 92.9
Region #6:   scaffold_19897:16676-16871   Identity: 87.14%    E-value: 1.2e-16   Bit-score: 92.5
Region #7:   scaffold_9786:196-406   Identity: 85.19%    E-value: 1.7e-16   Bit-score: 92
Region #8:   scaffold_143864:467-649   Identity: 88.36%    E-value: 7e-15   Bit-score: 86.6
Region #9:   scaffold_68771:1682-1817   Identity: 88.19%    E-value: 2e-09   Bit-score: 68.5
Region #10:   scaffold_38286:2-138   Identity: 79.56%    E-value: 5e-05   Bit-score: 53.9
Region #11:   scaffold_53822:5940-6078   Identity: 78.42%    E-value: 9.4e-05   Bit-score: 53

Opossum (monDom5):
Region #1:   chr2:481624171-481624409   Identity: 96.25%    E-value: 7.7e-26   Bit-score: 123.3
This UCNE has 10 paralogous regions in Opossum

Platypus (ornAna1):
Region #1:   Contig8365:5638-5878   Identity: 95.44%    E-value: 5.5e-35   Bit-score: 152.8
This UCNE has 1 paralogous region in Platypus

Zebra_finch (taeGut1):
Region #1:   chr26:3158251-3158490   Identity: 92.92%    E-value: 1.3e-29   Bit-score: 134.3
This UCNE has 1 paralogous region in Zebra_finch

Lizard (anoCar2):
Region #1:   chr4:126589207-126589441   Identity: 92.8%    E-value: 4.3e-31   Bit-score: 139.7

Painted_turtle (chrPic1):
Region #1:   JH584752:2545463-2545699   Identity: 93.31%    E-value: 5.2e-28   Bit-score: 130

Xenopus (xenTro3):
Region #1:   GL172671:3662891-3663123   Identity: 77.55%    E-value: 2.4e-17   Bit-score: 93.8

Fugu (fr2):
Region #1:   chrUn:149254553-149254810   Identity: 74.71%    E-value: 3.8e-21   Bit-score: 101
Region #2:   chrUn:261421134-261421340   Identity: 65.61%    E-value: 1.6e-10   Bit-score: 65.8

Medaka (oryLat2):
Region #1:   chr5:10057417-10057672   Identity: 75.68%    E-value: 6.5e-19   Bit-score: 93.8
Region #2:   chr7:22211234-22211443   Identity: 65.61%    E-value: 3.8e-07   Bit-score: 54.7

Stickleback (gasAcu1):
Region #1:   chrXVII:4890469-4890686   Identity: 76.92%    E-value: 3.5e-19   Bit-score: 94.7
Region #2:   chrXII:15649858-15650061   Identity: 67.11%    E-value: 1.2e-09   Bit-score: 63

Tetraodon (tetNig2):
Region #1:   chr11:3901132-3901379   Identity: 73.33%    E-value: 8.9e-18   Bit-score: 89.9
Region #2:   chr9:9230122-9230324   Identity: 68.16%    E-value: 2.6e-11   Bit-score: 68.4
Region #3:   chr9:9225977-9226179   Identity: 68.16%    E-value: 2.7e-11   Bit-score: 68.3

Zebrafish (danRer7):
Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):