UCNE: LHX9_Brooklyn
(id = 5316)

General information about the entry
Entry location:intron
Position:chr1:197573450-197573688
Length:239 nt
Sequence:LHX9_Brooklyn.fasta
Overlapping gene:DENND1B
Paralogs:
Ultraconserved Genomic Regulatory Block (UGRB): LHX9_cluster: chr1:197565969-198361006
External links:
CONDOR database:
VISTA Enhancer Browser:
UCE (Bejerano et al. 2004):
Other browsers view:[Ensembl] [ECR browser] [Ancora]
Conservation in chicken:
Chicken (galGal3): Region: chr8:2435987-2436225        Identity: >95%
Conservation in other species:
Mouse (mm10):
Region #1:   chr1:139092848-139093081   Identity: 94.44%    E-value: 1.2e-44   Bit-score: 185.4

Armadillo (dasNov1):
Region #1:   scaffold_94495:4583-4685   Identity: 100%    E-value: 0.0000000000000063   Bit-score: 86.8

Opossum (monDom5):
Region #1:   chr2:98164189-98164427   Identity: 95.82%    E-value: 2.6e-42   Bit-score: 178

Platypus (ornAna1):
Region #1:   chr4:47168694-47168931   Identity: 95.8%    E-value: 3.8e-48   Bit-score: 196.5

Zebra_finch (taeGut1):
Region #1:   chr8:4620996-4621233   Identity: 96.22%    E-value: 7e-47   Bit-score: 191.7

Lizard (anoCar2):
Region #1:   chrUn_GL343432:558618-558855   Identity: 92.02%    E-value: 8.1e-46   Bit-score: 188.7

Painted_turtle (chrPic1):
Region #1:   JH584765:2159897-2160134   Identity: 95.8%    E-value: 2.8e-46   Bit-score: 190.7

Xenopus (xenTro3):
Region #1:   GL172655:4596933-4597157   Identity: 71.05%    E-value: 1.9e-16   Bit-score: 90.9
This UCNE has 6 paralogous regions in Xenopus

Fugu (fr2):
Region #1:   chrUn:252340058-252340245   Identity: 66.14%    E-value: 0.0000000000069   Bit-score: 70.3

Medaka (oryLat2):
Region #1:   chr4:15213597-15213790   Identity: 71.79%    E-value: 2.1e-17   Bit-score: 88.8

Stickleback (gasAcu1):
Region #1:   chrVIII:9041307-9041523   Identity: 69.23%    E-value: 2.1e-16   Bit-score: 85.5

Tetraodon (tetNig2):
Region #1:   chr1:19739923-19740118   Identity: 64%    E-value: 0.000000000017   Bit-score: 69.1

Zebrafish (danRer7):
Region #1:   chr22:24487291-24487529   Identity: 73.14%    E-value: 1.4e-19   Bit-score: 96.8

Lamprey (petMar1):
Ciona_intestinalis (ci2):
Sea_urchin (strPur2):
Lancelet (braFlo1):