Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
positions_7nt_m3_shift0 (positions_7nt_m3) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; positions_7nt_m3; m=0 (reference); ncol1=16; shift=0; ncol=17; srTTTCYwGGAArtsr-
; Alignment reference
a 225 433 191 3 3 105 1 380 30 39 1231 1228 634 142 240 404 0
c 372 246 86 4 3 1125 892 153 7 2 2 3 44 216 326 279 0
g 375 329 66 7 2 3 1 306 1196 1157 1 2 411 156 453 317 0
t 265 229 894 1223 1229 4 343 398 4 39 3 4 148 723 218 237 0
|
MA0137.2_rc_shift0 (STAT1_rc) |
|
0.975 |
0.914 |
8.663 |
0.878 |
0.974 |
0.307 |
0.990 |
1 |
1 |
5 |
2 |
1 |
1 |
1 |
1.714 |
1 |
; positions_7nt_m3 versus MA0137.2_rc (STAT1_rc); m=1/5; ncol2=15; w=15; offset=0; strand=R; shift=0; score= 1.7143; gryTTCydGGAArtg--
; cor=0.975; Ncor=0.914; logoDP=8.663; NIcor=0.878; NsEucl=0.974; SSD=0.307; NSW=0.990; rcor=1; rNcor=1; rlogoDP=5; rNIcor=2; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=1.714; match_rank=1
a 431 714 315 15 32 302 66 680 155 44 2023 2038 1112 446 378 0 0
c 425 270 552 23 29 1700 1292 115 7 14 38 11 144 279 415 0 0
g 804 760 263 17 124 30 31 762 1900 1921 14 22 574 496 1076 0 0
t 417 336 954 2030 1900 53 696 528 23 106 8 10 251 859 208 0 0
|
MA0144.1_shift3 (Stat3) |
|
0.963 |
0.602 |
9.169 |
0.595 |
0.956 |
0.390 |
0.980 |
4 |
8 |
2 |
7 |
5 |
5 |
4 |
5.000 |
4 |
; positions_7nt_m3 versus MA0144.1 (Stat3); m=2/5; ncol2=10; w=10; offset=3; strand=D; shift=3; score= 5; ---TTCCaGGAAr----
; cor=0.963; Ncor=0.602; logoDP=9.169; NIcor=0.595; NsEucl=0.956; SSD=0.390; NSW=0.980; rcor=4; rNcor=8; rlogoDP=2; rNIcor=7; rNsEucl=5; rSSD=5; rNSW=4; rank_mean=5.000; match_rank=4
a 0 0 0 20 13 38 6 321 8 6 585 606 191 0 0 0 0
c 0 0 0 19 10 552 541 21 0 2 21 1 15 0 0 0 0
g 0 0 0 25 129 9 1 148 605 592 7 5 393 0 0 0 0
t 0 0 0 549 461 14 65 123 0 13 0 1 14 0 0 0 0
|
MA0156.1_shift6 (FEV) |
|
0.925 |
0.462 |
6.770 |
0.460 |
0.929 |
0.646 |
0.960 |
10 |
19 |
11 |
16 |
13 |
11 |
11 |
13.000 |
10 |
; positions_7nt_m3 versus MA0156.1 (FEV); m=3/5; ncol2=8; w=8; offset=6; strand=D; shift=6; score= 13; ------CAGGAArT---
; cor=0.925; Ncor=0.462; logoDP=6.770; NIcor=0.460; NsEucl=0.929; SSD=0.646; NSW=0.960; rcor=10; rNcor=19; rlogoDP=11; rNIcor=16; rNsEucl=13; rSSD=11; rNSW=11; rank_mean=13.000; match_rank=10
a 0 0 0 0 0 0 2 9 0 0 13 12 7 0 0 0 0
c 0 0 0 0 0 0 9 3 0 0 0 0 0 0 0 0 0
g 0 0 0 0 0 0 1 1 13 13 0 0 6 0 0 0 0
t 0 0 0 0 0 0 1 0 0 0 0 1 0 13 0 0 0
|
MA0062.2_shift6 (GABPA) |
|
0.822 |
0.483 |
7.163 |
0.488 |
0.910 |
1.621 |
0.919 |
24 |
15 |
10 |
12 |
19 |
26 |
24 |
18.571 |
19 |
; positions_7nt_m3 versus MA0062.2 (GABPA); m=4/5; ncol2=11; w=10; offset=6; strand=D; shift=6; score=18.5714; ------CCGGAAGygvc
; cor=0.822; Ncor=0.483; logoDP=7.163; NIcor=0.488; NsEucl=0.910; SSD=1.621; NSW=0.919; rcor=24; rNcor=15; rlogoDP=10; rNIcor=12; rNsEucl=19; rSSD=26; rNSW=24; rank_mean=18.571; match_rank=19
a 0 0 0 0 0 0 32 70 0 0 991 989 94 56 154 264 233
c 0 0 0 0 0 0 768 914 0 0 1 2 32 261 137 262 357
g 0 0 0 0 0 0 188 4 990 991 1 0 866 37 603 415 224
t 0 0 0 0 0 0 1 1 1 0 0 2 0 637 96 49 176
|
MA0136.1_rc_shift6 (ELF5_rc) |
|
0.834 |
0.469 |
0.177 |
-0.102 |
0.917 |
1.111 |
0.938 |
23 |
18 |
28 |
26 |
17 |
19 |
16 |
21.000 |
22 |
; positions_7nt_m3 versus MA0136.1_rc (ELF5_rc); m=5/5; ncol2=9; w=9; offset=6; strand=R; shift=6; score= 21; ------mmGGAwrtw--
; cor=0.834; Ncor=0.469; logoDP=0.177; NIcor=-0.102; NsEucl=0.917; SSD=1.111; NSW=0.938; rcor=23; rNcor=18; rlogoDP=28; rNIcor=26; rNsEucl=17; rSSD=19; rNSW=16; rank_mean=21.000; match_rank=22
a 0 0 0 0 0 0 21 26 0 0 43 29 17 5 20 0 0
c 0 0 0 0 0 0 11 11 0 0 0 1 5 7 3 0 0
g 0 0 0 0 0 0 8 3 44 44 1 0 20 3 9 0 0
t 0 0 0 0 0 0 4 4 0 0 0 14 2 29 12 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_7nt_mkv4_m3_shift1 (oligos_7nt_mkv4_m3) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_7nt_mkv4_m3; m=0 (reference); ncol1=13; shift=1; ncol=16; -ryTTCCmrGAAry--
; Alignment reference
a 0 381 217 0 4 8 1 597 450 1 1213 1217 492 233 0 0
c 0 271 347 0 0 1168 1214 612 1 0 3 2 185 354 0 0
g 0 337 158 3 1 0 4 10 768 1195 0 0 333 244 0 0
t 0 230 497 1216 1214 43 0 0 0 23 3 0 209 388 0 0
|
MA0137.2_shift0 (STAT1) |
|
0.972 |
0.842 |
9.634 |
0.851 |
0.969 |
0.329 |
0.987 |
2 |
3 |
1 |
3 |
3 |
2 |
2 |
2.286 |
2 |
; oligos_7nt_mkv4_m3 versus MA0137.2 (STAT1); m=1/8; ncol2=15; w=13; offset=-1; strand=D; shift=0; score= 2.2857; cayTTCChrGAAryc-
; cor=0.972; Ncor=0.842; logoDP=9.634; NIcor=0.851; NsEucl=0.969; SSD=0.329; NSW=0.987; rcor=2; rNcor=3; rlogoDP=1; rNIcor=3; rNsEucl=3; rSSD=2; rNSW=2; rank_mean=2.286; match_rank=2
a 208 859 251 10 8 106 23 528 696 53 1900 2030 954 336 417 0
c 1076 496 574 22 14 1921 1900 762 31 30 124 17 263 760 804 0
g 415 279 144 11 38 14 7 115 1292 1700 29 23 552 270 425 0
t 378 446 1112 2038 2023 44 155 680 66 302 32 15 315 714 431 0
|
MA0144.1_rc_shift2 (Stat3_rc) |
|
0.922 |
0.709 |
4.339 |
0.204 |
0.934 |
0.861 |
0.957 |
11 |
4 |
24 |
24 |
9 |
13 |
12 |
13.857 |
11 |
; oligos_7nt_mkv4_m3 versus MA0144.1_rc (Stat3_rc); m=2/8; ncol2=10; w=10; offset=1; strand=R; shift=2; score=13.8571; --yTTCCtGGAA----
; cor=0.922; Ncor=0.709; logoDP=4.339; NIcor=0.204; NsEucl=0.934; SSD=0.861; NSW=0.957; rcor=11; rNcor=4; rlogoDP=24; rNIcor=24; rNsEucl=9; rSSD=13; rNSW=12; rank_mean=13.857; match_rank=11
a 0 0 14 1 0 13 0 123 65 14 461 549 0 0 0 0
c 0 0 393 5 7 592 605 148 1 9 129 25 0 0 0 0
g 0 0 15 1 21 2 0 21 541 552 10 19 0 0 0 0
t 0 0 191 606 585 6 8 321 6 38 13 20 0 0 0 0
|
MA0152.1_shift1 (NFATC2) |
|
0.875 |
0.471 |
6.581 |
0.469 |
0.904 |
0.901 |
0.936 |
16 |
17 |
12 |
14 |
22 |
14 |
17 |
16.000 |
14 |
; oligos_7nt_mkv4_m3 versus MA0152.1 (NFATC2); m=3/8; ncol2=7; w=7; offset=0; strand=D; shift=1; score= 16; -TTTTCCA--------
; cor=0.875; Ncor=0.471; logoDP=6.581; NIcor=0.469; NsEucl=0.904; SSD=0.901; NSW=0.936; rcor=16; rNcor=17; rlogoDP=12; rNIcor=14; rNsEucl=22; rSSD=14; rNSW=17; rank_mean=16.000; match_rank=14
a 0 3 1 1 0 1 0 18 0 0 0 0 0 0 0 0
c 0 1 2 1 0 25 26 3 0 0 0 0 0 0 0 0
g 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 0
t 0 20 21 24 26 0 0 4 0 0 0 0 0 0 0 0
|
MA0156.1_shift6 (FEV) |
|
0.846 |
0.521 |
6.282 |
0.484 |
0.901 |
1.264 |
0.921 |
20 |
11 |
15 |
13 |
24 |
21 |
22 |
18.000 |
16 |
; oligos_7nt_mkv4_m3 versus MA0156.1 (FEV); m=4/8; ncol2=8; w=8; offset=5; strand=D; shift=6; score= 18; ------CAGGAArT--
; cor=0.846; Ncor=0.521; logoDP=6.282; NIcor=0.484; NsEucl=0.901; SSD=1.264; NSW=0.921; rcor=20; rNcor=11; rlogoDP=15; rNIcor=13; rNsEucl=24; rSSD=21; rNSW=22; rank_mean=18.000; match_rank=16
a 0 0 0 0 0 0 2 9 0 0 13 12 7 0 0 0
c 0 0 0 0 0 0 9 3 0 0 0 0 0 0 0 0
g 0 0 0 0 0 0 1 1 13 13 0 0 6 0 0 0
t 0 0 0 0 0 0 1 0 0 0 0 1 0 13 0 0
|
MA0080.2_shift7 (SPI1) |
|
0.842 |
0.453 |
5.422 |
0.442 |
0.895 |
1.081 |
0.923 |
22 |
21 |
18 |
19 |
29 |
18 |
21 |
21.143 |
23 |
; oligos_7nt_mkv4_m3 versus MA0080.2 (SPI1); m=5/8; ncol2=7; w=7; offset=6; strand=D; shift=7; score=21.1429; -------AGGAAGT--
; cor=0.842; Ncor=0.453; logoDP=5.422; NIcor=0.442; NsEucl=0.895; SSD=1.081; NSW=0.923; rcor=22; rNcor=21; rlogoDP=18; rNIcor=19; rNsEucl=29; rSSD=18; rNSW=21; rank_mean=21.143; match_rank=23
a 0 0 0 0 0 0 0 33 4 4 42 41 5 3 0 0
c 0 0 0 0 0 0 0 3 0 0 0 0 3 5 0 0
g 0 0 0 0 0 0 0 6 37 38 0 1 33 2 0 0
t 0 0 0 0 0 0 0 0 1 0 0 0 1 32 0 0
|
MA0098.1_rc_shift7 (ETS1_rc) |
|
0.876 |
0.404 |
0.152 |
-0.109 |
0.904 |
0.662 |
0.945 |
15 |
30 |
29 |
28 |
23 |
12 |
15 |
21.714 |
25 |
; oligos_7nt_mkv4_m3 versus MA0098.1_rc (ETS1_rc); m=6/8; ncol2=6; w=6; offset=6; strand=R; shift=7; score=21.7143; -------mGGAwr---
; cor=0.876; Ncor=0.404; logoDP=0.152; NIcor=-0.109; NsEucl=0.904; SSD=0.662; NSW=0.945; rcor=15; rNcor=30; rlogoDP=29; rNIcor=28; rNsEucl=23; rSSD=12; rNSW=15; rank_mean=21.714; match_rank=25
a 0 0 0 0 0 0 0 15 1 0 39 23 16 0 0 0
c 0 0 0 0 0 0 0 17 0 1 0 0 4 0 0 0
g 0 0 0 0 0 0 0 3 39 39 1 0 16 0 0 0
t 0 0 0 0 0 0 0 5 0 0 0 17 4 0 0 0
|
MA0062.2_shift6 (GABPA) |
|
0.845 |
0.422 |
7.243 |
0.402 |
0.897 |
1.360 |
0.915 |
21 |
27 |
9 |
21 |
27 |
22 |
26 |
21.857 |
26 |
; oligos_7nt_mkv4_m3 versus MA0062.2 (GABPA); m=7/8; ncol2=11; w=8; offset=5; strand=D; shift=6; score=21.8571; ------CCGGAAGygv
; cor=0.845; Ncor=0.422; logoDP=7.243; NIcor=0.402; NsEucl=0.897; SSD=1.360; NSW=0.915; rcor=21; rNcor=27; rlogoDP=9; rNIcor=21; rNsEucl=27; rSSD=22; rNSW=26; rank_mean=21.857; match_rank=26
a 0 0 0 0 0 0 32 70 0 0 991 989 94 56 154 264
c 0 0 0 0 0 0 768 914 0 0 1 2 32 261 137 262
g 0 0 0 0 0 0 188 4 990 991 1 0 866 37 603 415
t 0 0 0 0 0 0 1 1 1 0 0 2 0 637 96 49
|
MA0136.1_rc_shift6 (ELF5_rc) |
|
0.758 |
0.433 |
0.210 |
-0.127 |
0.888 |
1.608 |
0.899 |
30 |
24 |
27 |
29 |
30 |
25 |
30 |
27.857 |
30 |
; oligos_7nt_mkv4_m3 versus MA0136.1_rc (ELF5_rc); m=8/8; ncol2=9; w=8; offset=5; strand=R; shift=6; score=27.8571; ------mmGGAwrtw-
; cor=0.758; Ncor=0.433; logoDP=0.210; NIcor=-0.127; NsEucl=0.888; SSD=1.608; NSW=0.899; rcor=30; rNcor=24; rlogoDP=27; rNIcor=29; rNsEucl=30; rSSD=25; rNSW=30; rank_mean=27.857; match_rank=30
a 0 0 0 0 0 0 21 26 0 0 43 29 17 5 20 0
c 0 0 0 0 0 0 11 11 0 0 0 1 5 7 3 0
g 0 0 0 0 0 0 8 3 44 44 1 0 20 3 9 0
t 0 0 0 0 0 0 4 4 0 0 0 14 2 29 12 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_7nt_mkv4_m1_shift0 (oligos_7nt_mkv4_m1) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_7nt_mkv4_m1; m=0 (reference); ncol1=14; shift=0; ncol=15; srTTTCCwGGAAay-
; Alignment reference
a 237 426 84 1 1 178 0 456 265 0 1319 1318 550 257 0
c 455 268 57 1 40 1142 1320 266 1 0 0 2 202 358 0
g 349 370 74 0 0 0 0 176 1054 1138 0 0 315 228 0
t 279 256 1105 1318 1279 0 0 422 0 182 1 0 253 477 0
|
MA0137.2_shift0 (STAT1) |
|
0.967 |
0.903 |
9.138 |
0.901 |
0.969 |
0.372 |
0.987 |
3 |
2 |
3 |
1 |
2 |
4 |
3 |
2.571 |
3 |
; oligos_7nt_mkv4_m1 versus MA0137.2 (STAT1); m=1/6; ncol2=15; w=14; offset=0; strand=D; shift=0; score= 2.5714; cayTTCChrGAAryc
; cor=0.967; Ncor=0.903; logoDP=9.138; NIcor=0.901; NsEucl=0.969; SSD=0.372; NSW=0.987; rcor=3; rNcor=2; rlogoDP=3; rNIcor=1; rNsEucl=2; rSSD=4; rNSW=3; rank_mean=2.571; match_rank=3
a 208 859 251 10 8 106 23 528 696 53 1900 2030 954 336 417
c 1076 496 574 22 14 1921 1900 762 31 30 124 17 263 760 804
g 415 279 144 11 38 14 7 115 1292 1700 29 23 552 270 425
t 378 446 1112 2038 2023 44 155 680 66 302 32 15 315 714 431
|
MA0144.1_shift3 (Stat3) |
|
0.948 |
0.677 |
8.999 |
0.673 |
0.948 |
0.541 |
0.973 |
6 |
5 |
4 |
5 |
8 |
8 |
7 |
6.143 |
6 |
; oligos_7nt_mkv4_m1 versus MA0144.1 (Stat3); m=2/6; ncol2=10; w=10; offset=3; strand=D; shift=3; score= 6.1429; ---TTCCaGGAAr--
; cor=0.948; Ncor=0.677; logoDP=8.999; NIcor=0.673; NsEucl=0.948; SSD=0.541; NSW=0.973; rcor=6; rNcor=5; rlogoDP=4; rNIcor=5; rNsEucl=8; rSSD=8; rNSW=7; rank_mean=6.143; match_rank=6
a 0 0 0 20 13 38 6 321 8 6 585 606 191 0 0
c 0 0 0 19 10 552 541 21 0 2 21 1 15 0 0
g 0 0 0 25 129 9 1 148 605 592 7 5 393 0 0
t 0 0 0 549 461 14 65 123 0 13 0 1 14 0 0
|
MA0152.1_shift1 (NFATC2) |
|
0.913 |
0.456 |
6.329 |
0.454 |
0.919 |
0.639 |
0.954 |
13 |
20 |
14 |
17 |
16 |
10 |
13 |
14.714 |
12 |
; oligos_7nt_mkv4_m1 versus MA0152.1 (NFATC2); m=3/6; ncol2=7; w=7; offset=1; strand=D; shift=1; score=14.7143; -TTTTCCA-------
; cor=0.913; Ncor=0.456; logoDP=6.329; NIcor=0.454; NsEucl=0.919; SSD=0.639; NSW=0.954; rcor=13; rNcor=20; rlogoDP=14; rNIcor=17; rNsEucl=16; rSSD=10; rNSW=13; rank_mean=14.714; match_rank=12
a 0 3 1 1 0 1 0 18 0 0 0 0 0 0 0
c 0 1 2 1 0 25 26 3 0 0 0 0 0 0 0
g 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0
t 0 20 21 24 26 0 0 4 0 0 0 0 0 0 0
|
MA0156.1_shift6 (FEV) |
|
0.858 |
0.491 |
5.956 |
0.468 |
0.905 |
1.161 |
0.927 |
18 |
13 |
17 |
15 |
21 |
20 |
20 |
17.714 |
15 |
; oligos_7nt_mkv4_m1 versus MA0156.1 (FEV); m=4/6; ncol2=8; w=8; offset=6; strand=D; shift=6; score=17.7143; ------CAGGAArT-
; cor=0.858; Ncor=0.491; logoDP=5.956; NIcor=0.468; NsEucl=0.905; SSD=1.161; NSW=0.927; rcor=18; rNcor=13; rlogoDP=17; rNIcor=15; rNsEucl=21; rSSD=20; rNSW=20; rank_mean=17.714; match_rank=15
a 0 0 0 0 0 0 2 9 0 0 13 12 7 0 0
c 0 0 0 0 0 0 9 3 0 0 0 0 0 0 0
g 0 0 0 0 0 0 1 1 13 13 0 0 6 0 0
t 0 0 0 0 0 0 1 0 0 0 0 1 0 13 0
|
MA0080.2_shift7 (SPI1) |
|
0.855 |
0.427 |
5.088 |
0.423 |
0.899 |
1.000 |
0.929 |
19 |
26 |
20 |
20 |
26 |
17 |
19 |
21.000 |
21 |
; oligos_7nt_mkv4_m1 versus MA0080.2 (SPI1); m=5/6; ncol2=7; w=7; offset=7; strand=D; shift=7; score= 21; -------AGGAAGT-
; cor=0.855; Ncor=0.427; logoDP=5.088; NIcor=0.423; NsEucl=0.899; SSD=1.000; NSW=0.929; rcor=19; rNcor=26; rlogoDP=20; rNIcor=20; rNsEucl=26; rSSD=17; rNSW=19; rank_mean=21.000; match_rank=21
a 0 0 0 0 0 0 0 33 4 4 42 41 5 3 0
c 0 0 0 0 0 0 0 3 0 0 0 0 3 5 0
g 0 0 0 0 0 0 0 6 37 38 0 1 33 2 0
t 0 0 0 0 0 0 0 0 1 0 0 0 1 32 0
|
MA0136.1_shift0 (ELF5) |
|
0.760 |
0.488 |
5.328 |
0.495 |
0.899 |
1.651 |
0.908 |
29 |
14 |
19 |
11 |
25 |
27 |
29 |
22.000 |
27 |
; oligos_7nt_mkv4_m1 versus MA0136.1 (ELF5); m=6/6; ncol2=9; w=9; offset=0; strand=D; shift=0; score= 22; waywTCCkk------
; cor=0.760; Ncor=0.488; logoDP=5.328; NIcor=0.495; NsEucl=0.899; SSD=1.651; NSW=0.908; rcor=29; rNcor=14; rlogoDP=19; rNIcor=11; rNsEucl=25; rSSD=27; rNSW=29; rank_mean=22.000; match_rank=27
a 12 29 2 14 0 0 0 4 4 0 0 0 0 0 0
c 9 3 20 0 1 44 44 3 8 0 0 0 0 0 0
g 3 7 5 1 0 0 0 11 11 0 0 0 0 0 0
t 20 5 17 29 43 0 0 26 21 0 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
positions_7nt_m1_shift0 (positions_7nt_m1) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; positions_7nt_m1; m=0 (reference); ncol1=21; shift=0; ncol=21; wsTsrTTTCCwGGAAatsAsa
; Alignment reference
a 124 107 52 35 289 18 1 4 77 11 153 80 33 472 477 287 85 17 330 114 138
c 117 138 39 167 31 113 2 28 401 442 92 2 4 8 3 30 87 196 57 143 117
g 112 148 53 247 137 19 2 6 2 3 97 395 400 2 2 105 23 244 51 131 113
t 131 91 340 35 27 334 479 446 4 28 142 7 47 2 2 62 289 27 46 96 116
|
MA0137.2_rc_shift3 (STAT1_rc) |
|
0.945 |
0.675 |
7.824 |
0.676 |
0.963 |
0.625 |
0.979 |
8 |
6 |
6 |
4 |
4 |
9 |
5 |
6.000 |
5 |
; positions_7nt_m1 versus MA0137.2_rc (STAT1_rc); m=1/3; ncol2=15; w=15; offset=3; strand=R; shift=3; score= 6; ---gryTTCydGGAArtg---
; cor=0.945; Ncor=0.675; logoDP=7.824; NIcor=0.676; NsEucl=0.963; SSD=0.625; NSW=0.979; rcor=8; rNcor=6; rlogoDP=6; rNIcor=4; rNsEucl=4; rSSD=9; rNSW=5; rank_mean=6.000; match_rank=5
a 0 0 0 431 714 315 15 32 302 66 680 155 44 2023 2038 1112 446 378 0 0 0
c 0 0 0 425 270 552 23 29 1700 1292 115 7 14 38 11 144 279 415 0 0 0
g 0 0 0 804 760 263 17 124 30 31 762 1900 1921 14 22 574 496 1076 0 0 0
t 0 0 0 417 336 954 2030 1900 53 696 528 23 106 8 10 251 859 208 0 0 0
|
MA0144.1_shift6 (Stat3) |
|
0.948 |
0.451 |
7.793 |
0.447 |
0.948 |
0.531 |
0.973 |
7 |
22 |
7 |
18 |
7 |
7 |
6 |
10.571 |
9 |
; positions_7nt_m1 versus MA0144.1 (Stat3); m=2/3; ncol2=10; w=10; offset=6; strand=D; shift=6; score=10.5714; ------TTCCaGGAAr-----
; cor=0.948; Ncor=0.451; logoDP=7.793; NIcor=0.447; NsEucl=0.948; SSD=0.531; NSW=0.973; rcor=7; rNcor=22; rlogoDP=7; rNIcor=18; rNsEucl=7; rSSD=7; rNSW=6; rank_mean=10.571; match_rank=9
a 0 0 0 0 0 0 20 13 38 6 321 8 6 585 606 191 0 0 0 0 0
c 0 0 0 0 0 0 19 10 552 541 21 0 2 21 1 15 0 0 0 0 0
g 0 0 0 0 0 0 25 129 9 1 148 605 592 7 5 393 0 0 0 0 0
t 0 0 0 0 0 0 549 461 14 65 123 0 13 0 1 14 0 0 0 0 0
|
MA0062.2_shift9 (GABPA) |
|
0.778 |
0.408 |
5.981 |
0.399 |
0.909 |
2.004 |
0.909 |
26 |
29 |
16 |
22 |
20 |
28 |
28 |
24.143 |
28 |
; positions_7nt_m1 versus MA0062.2 (GABPA); m=3/3; ncol2=11; w=11; offset=9; strand=D; shift=9; score=24.1429; ---------CCGGAAGygvc-
; cor=0.778; Ncor=0.408; logoDP=5.981; NIcor=0.399; NsEucl=0.909; SSD=2.004; NSW=0.909; rcor=26; rNcor=29; rlogoDP=16; rNIcor=22; rNsEucl=20; rSSD=28; rNSW=28; rank_mean=24.143; match_rank=28
a 0 0 0 0 0 0 0 0 0 32 70 0 0 991 989 94 56 154 264 233 0
c 0 0 0 0 0 0 0 0 0 768 914 0 0 1 2 32 261 137 262 357 0
g 0 0 0 0 0 0 0 0 0 188 4 990 991 1 0 866 37 603 415 224 0
t 0 0 0 0 0 0 0 0 0 1 1 1 0 0 2 0 637 96 49 176 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_7nt_mkv4_m2_shift0 (oligos_7nt_mkv4_m2) |
|
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_7nt_mkv4_m2; m=0 (reference); ncol1=13; shift=0; ncol=13; rwrTGAsTCATty
; Alignment reference
a 169 181 354 0 0 602 45 0 87 602 16 139 146
c 139 111 41 0 0 1 263 0 516 0 63 133 174
g 162 146 192 0 603 0 243 1 0 1 41 148 115
t 133 165 16 603 0 0 52 602 0 0 483 183 168
|
MA0099.2_rc_shift3 (AP1_rc) |
|
0.951 |
0.512 |
6.533 |
0.518 |
0.933 |
0.441 |
0.969 |
5 |
12 |
13 |
8 |
10 |
6 |
9 |
9.000 |
7 |
; oligos_7nt_mkv4_m2 versus MA0099.2_rc (AP1_rc); m=1/3; ncol2=7; w=7; offset=3; strand=R; shift=3; score= 9; ---TGAkTCA---
; cor=0.951; Ncor=0.512; logoDP=6.533; NIcor=0.518; NsEucl=0.933; SSD=0.441; NSW=0.969; rcor=5; rNcor=12; rlogoDP=13; rNIcor=8; rNsEucl=10; rSSD=6; rNSW=9; rank_mean=9.000; match_rank=7
a 0 0 0 1 0 14 0 0 3 17 0 0 0
c 0 0 0 1 3 1 1 0 15 0 0 0 0
g 0 0 0 0 15 0 12 2 0 1 0 0 0
t 0 0 0 16 0 3 5 16 0 0 0 0 0
|
MA0089.1_rc_shift6 (NFE2L1::MafG_rc) |
|
0.942 |
0.435 |
0.077 |
-0.104 |
0.931 |
0.340 |
0.972 |
9 |
23 |
30 |
27 |
12 |
3 |
8 |
16.000 |
13 |
; oligos_7nt_mkv4_m2 versus MA0089.1_rc (NFE2L1::MafG_rc); m=2/3; ncol2=6; w=6; offset=6; strand=R; shift=6; score= 16; ------GTCATs-
; cor=0.942; Ncor=0.435; logoDP=0.077; NIcor=-0.104; NsEucl=0.931; SSD=0.340; NSW=0.972; rcor=9; rNcor=23; rlogoDP=30; rNIcor=27; rNsEucl=12; rSSD=3; rNSW=8; rank_mean=16.000; match_rank=13
a 0 0 0 0 0 0 6 0 1 34 0 6 0
c 0 0 0 0 0 0 2 0 32 0 3 10 0
g 0 0 0 0 0 0 26 0 0 0 2 11 0
t 0 0 0 0 0 0 0 34 1 0 29 7 0
|
MA0067.1_rc_shift0 (Pax2_rc) |
|
0.767 |
0.472 |
0.370 |
-0.142 |
0.896 |
1.379 |
0.914 |
28 |
16 |
26 |
30 |
28 |
24 |
27 |
25.571 |
29 |
; oligos_7nt_mkv4_m2 versus MA0067.1_rc (Pax2_rc); m=3/3; ncol2=8; w=8; offset=0; strand=R; shift=0; score=25.5714; vmrTGAcw-----
; cor=0.767; Ncor=0.472; logoDP=0.370; NIcor=-0.142; NsEucl=0.896; SSD=1.379; NSW=0.914; rcor=28; rNcor=16; rlogoDP=26; rNIcor=30; rNsEucl=28; rSSD=24; rNSW=27; rank_mean=25.571; match_rank=29
a 8 10 11 1 2 26 2 9 0 0 0 0 0
c 11 19 1 3 1 0 21 5 0 0 0 0 0
g 11 0 17 1 28 2 1 7 0 0 0 0 0
t 1 2 2 26 0 3 7 10 0 0 0 0 0
|