; convert-matrix -v 1 -i $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.txt
; Input files
; input /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.tf
; Input format transfac
; Output files
; output /home/rsat/rsa-tools/public_html/tmp/wwwrun/2013/01/11/peak-motifs.2013-01-11.110705_2013-01-11.110705_PdhmNx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50_pssm_count_matrices.txt
; Output format tab
; pseudo-weight 1
a 53 36 70 5 143 5 3 14 23 15 40 20 22 116 154 129 8 6 39 46 38
c 28 40 24 139 4 1 1 11 97 108 41 10 8 9 1 1 4 10 24 39 39
g 35 40 22 8 8 2 1 11 7 0 29 100 84 20 1 25 4 137 24 36 33
t 43 43 43 7 4 151 154 123 32 36 49 29 45 14 3 4 143 6 72 38 49
//
a 36 33 74 5 114 3 2 4 15 15 17 19 18 83 81 91 9 4 30 39 34
c 28 23 15 105 4 2 1 2 70 62 41 21 3 10 11 7 4 6 16 28 24
g 30 26 14 8 3 3 0 0 10 5 34 69 50 21 19 5 2 111 10 27 25
t 31 43 22 7 4 117 122 119 30 43 33 16 54 11 14 22 110 4 69 31 42
//
a 38 43 81 8 142 9 3 13 24 22 40 68 25 103 157 154 13 10 36 48 40
c 26 35 15 136 4 5 3 5 85 112 75 13 7 11 0 3 9 11 17 40 36
g 43 41 27 6 6 8 0 10 8 0 10 65 96 34 2 1 9 127 21 37 32
t 53 41 37 10 8 138 154 132 43 26 35 14 32 12 1 2 129 12 86 35 52
//
; Host name rsat
; Job started 2013-01-11.111024
; Job done 2013-01-11.111024
; Seconds 0.15
; user 0.15
; system 0
; cuser 0
; csystem 0