AME (Analysis of Motif Enrichment): Compiled on Mar  5 2012 at 20:38:37
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Copyright (c) Robert McLeay <r.mcleay@imb.uq.edu.au> & Timothy Bailey <t.bailey@imb.uq.edu.au>, 2009.

Command line
ame --verbose 1 --oc ame_out --fix-partition 273 --bgformat 0 ./seqs-centered_w_bg db/JASPAR_CORE_2009.meme

Not in partition maximisation mode. Fixing partition at 273.

Threshold p-value for reporting results: 0.001
Motif p-values are corrected by #Motifs * #ThresholdsTested - (476 * 1 = 476)

1. Fisher-exact p-value of motif MA0142.1 Pou5f1 top 273 seqs: 4.414e-20 (Corrected p-value: 2.101e-17)
2. Fisher-exact p-value of motif MA0143.1 Sox2 top 273 seqs: 1.351e-14 (Corrected p-value: 6.43e-12)
3. Fisher-exact p-value of motif MA00445.1 D top 273 seqs: 6.886e-11 (Corrected p-value: 3.278e-08)
4. Fisher-exact p-value of motif MA0077.1 SOX9 top 273 seqs: 1.577e-07 (Corrected p-value: 7.505e-05)
5. Fisher-exact p-value of motif MA0453.1 nub top 273 seqs: 1.733e-06 (Corrected p-value: 0.0008247)