# DREME 4.8.1
# command:   dreme -v 1 -oc dreme_out -p ./seqs-centered -n ./seqs-shuffled -png
# host:      compute-0-8.local
# when:      Tue May 29 05:10:00 PDT 2012
# positives: 273
#      from: ./seqs-centered (Tue May 29 04:55:09 PDT 2012)
# negatives: 273
#      from: ./seqs-shuffled (Tue May 29 04:55:10 PDT 2012)


MEME version 4.8.1

ALPHABET= ACGT

strands: + -

Background letter frequencies (from dataset):
A 0.273 C 0.224 G 0.223 T 0.280

MOTIF ACAAWRG

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     ACAAWRG    CYWTTGT        106         14   2.9e-023   6.7e-019
#          ACAAAGG    CCTTTGT         37          2   4.4e-010   1.0e-005
#          ACAATGG    CCATTGT         30          1   6.8e-009   1.6e-004
#          ACAAAAG    CTTTTGT         36          6   5.9e-007   1.4e-002
#          ACAATAG    CTATTGT         22          5   5.8e-004   1.4e+001

letter-probability matrix: alength= 4 w= 7 nsites= 131 E= 6.7e-019
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.587786 0.000000 0.000000 0.412214
0.458015 0.000000 0.541985 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCATYA

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      CCATYA     TRATGG         79         21   5.1e-011   1.2e-006
#           CCATCA     TGATGG         38          9   5.4e-006   1.2e-001
#           CCATTA     TAATGG         43         12   6.3e-006   1.4e-001

letter-probability matrix: alength= 4 w= 6 nsites= 87 E= 1.2e-006
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.505747 0.000000 0.494253
1.000000 0.000000 0.000000 0.000000