Hornitschek 12, Genome-wide identification of PIF5 binding sites

Description

14 days-old seedlings grown undet white light with high R/FR ratio in 12h:12h long days circles. Sample marked as shade had an additional 2h treatment of lor R/FR light.

Source

Data available at: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35059

Input file formats : SRA

Samples

From Arabidopsis at10 (TAIR10/araTha1) Assembly

Filename Description Feature GEO-ID
1 GSM861508.sga PIF5ox|shade shade GSM861508
2 GSM861509.sga PIF5ox|input input GSM861509

Technical Notes

Reads files were mapped to TAIR10 genome using bowtie. The resulting SAM filee were converted into SGA using samTools, BedTools and ChIP-Seq tools.

References

  1. GEO dataset GSE35059: ChIP-Seq analysis of Phytochrome Interacting Factor 5 DNA binding in low R/FR condition.