ChIP-seq analysis of the ARF6 transcription factor. ARFs are transcription factors that bind the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Transgenic plants expressiong ARF6-Myc driven by native ARF6 promoter (ARF6p::ARF6-Myc) are grown in the dark for 5 days. The etiolated seedlings are then used as input for chromatin extraction with an anti-myc antibody.
Data available at: GEO
Input file formats : SRA
From Arabidopsis at10 (araTha1) Assembly
BAM file was converted into SGA using BedTools and ChIP-Seq tools.
Oh E, Zhu JY, Bai MY, Arenhart RA et al.Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl. Elife 2014 May 27;3. 24867218