Valouev08, A high resolution nucleosome map.

Description

In vivo positions of more than 44 million putative nucleosome cores in C.elegans using SOLiD (Applied Biosystems).

Source

Samples

From C. elegans (May 2008 WS190/ce6).

DNase FAIRE data:

Filename Description Feature GEO-ID
1 MNase_sample.sga MNase sample MNase -

Technical Notes

FASTQ files were extracted from SRA files (ID SRR015241 and SRR015242) using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

References

Last update: 11 Oct 2017