Valouev08, A high resolution nucleosome map
In vivo positions of more than 44 million putative nucleosome cores in C.elegans using SOLiD (Applied Biosystems).
Data can be downloaded from NCBI SRA databases: SRR015241, SRR015242.
Control samples can be downloaded from from NCBI SRA databases: SRR001662, SRR015240.
From C. elegans genome WC190 (ce6).
SRA files were downloaded from the NCBI SRA databases SRR015241 and SRR015242,
and converted in FASTQ using fastq-dump program
from sratoolkit. Mapping
and sam files were converted in sga files
- Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM.
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.
Genome Res 2008 Jul;18(7):1051-63. PMID:
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