Bonn 2012, Analisys of H3 modifications in mesoderm.

Description

This experiment describes several histone signatures in mesodermal cells of D. malanogaster.

Source

Samples

From D. melanogaster (Apr 2006 BDGP R5/dm3).

ChIP-seq data:

Filename Description Feature GEO-ID
1 ERR031126.sga Mesoderm input Rep1 input -
2 ERR031127.sga Mesoderm input Rep2 input -
3 ERR031128.sga Mesoderm H3 Rep1 H3 -
4 ERR031129.sga Mesoderm H3 Rep2 H3 -
5 ERR031130.sga Mesoderm H3K27ac Rep1 H3K27ac -
6 ERR031131.sga Mesoderm H3K27ac Rep2 H3K27ac -
7 ERR031132.sga Mesoderm H3K4me1 Rep1 H3K4me1 -
8 ERR031133.sga Mesoderm H3K4me1 Rep2 H3K4me1 -
9 ERR031134.sga Mesoderm H3K4me3 Rep1 H3K4me3 -
10 ERR031135.sga Mesoderm H3K4me3 Rep2 H3K4me3 -
11 ERR031136.sga Mesoderm H3K36me3 Rep1 H3K36me3 -
12 ERR031137.sga Mesoderm H3K36me3 Rep2 H3K36me3 -
13 ERR031138.sga Mesoderm H3K79me3 Rep1 H3K79me3 -
14 ERR031139.sga Mesoderm H3K79me3 Rep2 H3K79me3 -
15 ERR031140.sga Mesoderm H3K27me3 Rep1 H3K27me3 -
16 ERR031141.sga Mesoderm H3K27me3 Rep2 H3K27me3 -
17 ERR031142.sga Mesoderm PolII Rep1 PolII -
18 ERR031143.sga Mesoderm PolII Rep2 PolII -
19 ERR031144.sga Mesoderm BiTS_Mef2 BiTS_Mef2 -
20 ERR031145.sga Mesoderm Mef2 Rep1 Mef2 -
21 ERR031146.sga Mesoderm Mef2 Rep2 Mef2 -

Technical Notes

BAM files were downloaded from EBI and converted to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

References

Last update: 12 Oct 2017