SNP collection from dbSNP


SNPs data from the dbSNP database at NCBI (


Data have been downloaded from the dbSNP database FTP site:
Input file format: VCF


From Fruit Fly Apr. 2006 (R5/dm3) Assembly

Filename Description Feature GEO-ID
1 all_dbSNP137.sga Genomic SNPs snp -

Technical Notes

VCF files have been converted to both BED and SGA format using our in-house tools.


Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K.
dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 2001 Jan 1;29(1):308-11. PMID: 11125122