SNP collection from DGRP database

Description

SNPs data from the The Drosophila Genetic Reference Panel (version 2). SNPs with a frequence between 0.05 and 0.95 are referred as common and can be analyzed separately.

Source

Files downloaded from the DGRP portal via URL: http://dgrp2.gnets.ncsu.edu/data/website/dgrp2.vcf.gz
Input file format: VCF

Samples

From Fruit Fly Apr. 2006 (R5/dm3) Assembly

Filename Description Feature GEO-ID
1 dm_DGRP_SNP.sga Genomic SNPs snp -
2 dm_DGRP_SNP_common.sga Common SNPsi (5%) snp -

References

Huang W, Massouras A, Inoue Y, et al.,
Natural variation in genome architecture among 205 Drosophila melanogaster Genetic Reference Panel lines. Genome Res. 2014 Jul;24(7):1193-208. PMID: 24714809