Hoskins 2011, Drosophila embryo cap analysis of gene expression (CAGE)


This series contains only the CAGE data from the paper cited below. The RLM-RACE and cap-trapped ESTs are not included.


Mapped sequence tags were extracted from Supplementary Data File 1 available from Genome Research at:


From Fruit Fly Apr. 2006 (R5/dm3) Assembly

Filename Description Feature GEO-ID
1 embryo_cage.sga Embryo CAGE TSS -

Technical Notes

The downloaded source file is in SAM format and has been generated with the tag mapping program StatMap as described in the article cited below. We extracted all tags with mapping quality scores greater or equal to 30.


  1. Hoskins RA, Landolin JM, Brown JB, Sandler JE et al.
    Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res. 2011 Feb;21(2):182-92. PMID: 21177961

Genome browser viewable files

WIG files are available at: