Bohla 2014, CTCF/CP190 and ISWI dependent regulation of nucleosome occupancy. LiftOver from dm3.

Changes in chromatin organisation are investigated for two RNAi lines: CTCS (an insulator) and ISWI (a component of the nucleosome remodelling factor NURF). Moreover a luciferase control is also investigated.

• Raw data was downloaded from: GEO
• Input file format: SRA
• Download date: 4-10-2013

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

ChIP-seq data:

	Filename	Description	Feature	GEO-ID
1	GSM1248973.sga	H3|ISWI RNAi	H3	GSM1248973
2	GSM1248972.sga	H3|CTCF CP190 RNAi	H3	GSM1248972
3	GSM1248971.sga	H3|luciferase RNAi	H3	GSM1248971

DNase FAIRE data:

	Filename	Description	Feature	GEO-ID
1	GSM1248976.sga	MNase|ISWI RNAi	MNase	GSM1248976
2	GSM1248975.sga	MNase|CTCF CP190 RNAi	MNase	GSM1248975
3	GSM1248974.sga	MNase|luciferase RNAi	MNase	GSM1248974

Dataset lifted over from dm3.

• Bohla D, Herold M, Panzer I, Buxa MK, Ali T, Demmers J, Krüger M, Scharfe M, Jarek M, Bartkuhn M, Renkawitz R
  A functional insulator screen identifies NURF and dREAM components to be required for enhancer-blocking. PLoS One. 2014 Sep 23;9(9):e107765. doi: 10.1371/journal.pone.0107765. eCollection 2014. 25247414