Bonn 2012, Analisys of H3 modifications in mesoderm

Description

This experiment describes several histone signatures in mesodermal cells of D. malanogaster. The BAM files of this dataset have been downloaded from EBI and converted into SGA files.

Source

Files downloaded from EBI via URL: http://www.ebi.ac.uk/ena/data/view/reports/sra/submitted_files/ERP000560
Input file format: BAM

Samples

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6)

Filename Description Feature GEO-ID
1 ERR031126.sga Mesoderm input Rep1 input -
2 ERR031127.sga Mesoderm input Rep2 input -
3 ERR031128.sga Mesoderm H3 Rep1 H3 -
4 ERR031129.sga Mesoderm H3 Rep2 H3 -
5 ERR031130.sga Mesoderm H3K27ac Rep1 H3K27ac -
6 ERR031131.sga Mesoderm H3K27ac Rep2 H3K27ac -
7 ERR031132.sga Mesoderm H3K4me1 Rep1 H3K4me1 -
8 ERR031133.sga Mesoderm H3K4me1 Rep2 H3K4me1 -
9 ERR031134.sga Mesoderm H3K4me3 Rep1 H3K4me3 -
10 ERR031135.sga Mesoderm H3K4me3 Rep2 H3K4me3 -
11 ERR031136.sga Mesoderm H3K36me3 Rep1 H3K36me3 -
12 ERR031137.sga Mesoderm H3K36me3 Rep2 H3K36me3 -
13 ERR031138.sga Mesoderm H3K79me3 Rep1 H3K79me3 -
14 ERR031139.sga Mesoderm H3K79me3 Rep2 H3K79me3 -
15 ERR031140.sga Mesoderm H3K27me3 Rep1 H3K27me3 -
16 ERR031141.sga Mesoderm H3K27me3 Rep2 H3K27me3 -
17 ERR031142.sga Mesoderm PolII Rep1 PolII -
18 ERR031143.sga Mesoderm PolII Rep2 PolII -
19 ERR031144.sga Mesoderm BiTS_Mef2 BiTS_Mef2 -
20 ERR031145.sga Mesoderm Mef2 Rep1 Mef2 -
21 ERR031146.sga Mesoderm Mef2 Rep2 Mef2 -

Technical Notes

This dataset was lifted over from dm3.

References

  1. Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyski B, Riddell A, Furlong EE.
    Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nat Genet. 2012 Jan 8;44(2):148-56. PMID: 22231485