SRP001602, Tissue specific CAGE data.

Description

Expression profiling of D. melanogaster tissues and developmental stages.

Source

Samples

From D. melanogaster (Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

RNA-seq data:

Filename Description Feature GEO-ID
1 Mixed_embryo.sga Mixed embryo CAGE -
2 BG3-C2_Cell_Line.sga BG3-C2 Cell Line CAGE -
3 BG3-C2_cell_line_24h_20E.sga BG3-C2 cell line 24h 20E CAGE -
4 BG3-C2_cell_line_5h_20E.sga BG3-C2 cell line 5h 20E CAGE -
5 BG3-C2_cell_line_untreated.sga BG3-C2 cell line untreated CAGE -
6 Adult_Mated_Female_1_day_Post-eclosion_Heads_rep1.sga Adult Mated Female 1 day Post-eclosion Heads rep1 CAGE -
7 Adult_Mated_Female_1_day_Post-eclosion_Heads_rep2.sga Adult Mated Female 1 day Post-eclosion Heads rep2 CAGE -
8 Adult_Mated_Female_20_days_Post-eclosion_Heads.sga Adult Mated Female 20 days Post-eclosion Heads CAGE -
9 Adult_Mated_Female_4_days_Post-eclosion_Ovaries.sga Adult Mated Female 4 days Post-eclosion Ovaries CAGE -
10 Adult_Mated_Male_1_day_Post-eclosion_Heads_rep1.sga Adult Mated Male 1 day Post-eclosion Heads rep1 CAGE -
11 Adult_Mated_Male_1_day_Post-eclosion_Heads_rep2.sga Adult Mated Male 1 day Post-eclosion Heads rep2 CAGE -
12 Adult_Mated_Male_20_days_Post-eclosion_Heads.sga Adult Mated Male 20 days Post-eclosion Heads CAGE -
13 Adult_Mated_Male_4_days_Post-eclosion_AccessoryGlands.sga Adult Mated Male 4 days Post-eclosion AccessoryGlands CAGE -
14 Adult_Mated_Male_4_days_Post-eclosion_Testes_rep1.sga Adult Mated Male 4 days Post-eclosion Testes rep1 CAGE -
15 Adult_Mated_Male_4_days_Post-eclosion_Testes_rep2.sga Adult Mated Male 4 days Post-eclosion Testes rep2 CAGE -
16 Adult_Mixed_Male_and_Female_20_days_Post-eclosion_Digestive_System.sga Adult Mixed Male and Female 20 days Post-eclosion Digestive System CAGE -
17 Adult_Mixed_Male_and_Female_4_days_Post-eclosion_Carcass.sga Adult Mixed Male and Female 4 days Post-eclosion Carcass CAGE -
18 Adult_Mixed_Male_and_Female_4_days_Post-eclosion_Digestive_System.sga Adult Mixed Male and Female 4 days Post-eclosion Digestive System CAGE -
19 Adult_Virgin_Female_4_days_Post-eclosion_Ovaries.sga Adult Virgin Female 4 days Post-eclosion Ovaries CAGE -
20 L3_Carcass.sga L3 Carcass CAGE -
21 L3_CNS_rep1.sga L3 CNS rep1 CAGE -
22 L3_CNS_rep2.sga L3 CNS rep2 CAGE -
23 L3_Digestive_System.sga L3 Digestive System CAGE -
24 L3_Imaginal_Discs_rep1.sga L3 Imaginal Discs rep1 CAGE -
25 L3_Imaginal_Discs_rep2.sga L3 Imaginal Discs rep2 CAGE -
26 L3_Imaginal_Discs_rep3.sga L3 Imaginal Discs rep3 CAGE -
27 L3_Imaginal_Discs_rep4.sga L3 Imaginal Discs rep4 CAGE -
28 L3_Imaginal_Discs_rep5.sga L3 Imaginal Discs rep5 CAGE -
29 Pupae_White_Prepupae+2_days_CNS.sga Pupae White Prepupae+2 days CNS CAGE -
30 Pupae_White_Prepupae+2_days_Fat.sga Pupae White Prepupae+2 days Fat CAGE -
31 Embryos_12-14_hours_after_egg_laying.sga Embryos 12-14 hours after egg laying CAGE -
32 Embryos_16-18_hours_after_egg_laying.sga Embryos 16-18 hours after egg laying CAGE -
33 Embryos_20-22_hours_after_egg_laying.sga Embryos 20-22 hours after egg laying CAGE -
34 Embyros_0-2_hour_after_egg_laying_rep1.sga Embyros 0-2 hour after egg laying rep1 CAGE -
35 Embyros_0-2_hour_after_egg_laying_rep2.sga Embyros 0-2 hour after egg laying rep2 CAGE -
36 Embyros_2-4_hour_after_egg_laying_rep1.sga Embyros 2-4 hour after egg laying rep1 CAGE -
37 Embyros_2-4_hour_after_egg_laying_rep2.sga Embyros 2-4 hour after egg laying rep2 CAGE -
38 Embyros_4-6_hour_after_egg_laying.sga Embyros 4-6 hour after egg laying CAGE -
39 Embyros_6-8_hours_after_egg_laying.sga Embyros 6-8 hours after egg laying CAGE -
40 Embyros_8-10_hour_after_egg_laying.sga Embyros 8-10 hour after egg laying CAGE -
41 Kc167_Cell_Line_Cytoplasmic_RNA.sga Kc167 Cell Line Cytoplasmic RNA CAGE -
42 Kc167_Cell_Line_Nuclear_RNA.sga Kc167 Cell Line Nuclear RNA CAGE -
43 Pupae_2_days_after_white_prepupae.sga Pupae 2 days after white prepupae CAGE -
44 S2-DRSC_Cell_Line.sga S2-DRSC Cell Line CAGE -
45 L1_stage_larvae.sga L1 stage larvae CAGE -
46 L2_stage_larvae.sga L2 stage larvae CAGE -
47 L3_stage_larvae_12_hr_post-molt.sga L3 stage larvae 12 hr post-molt CAGE -
48 L3_stage_larvae_light_blue_gut_PS-3-6.sga L3 stage larvae light blue gut PS(3-6) CAGE -
49 Pupae_12_hr_after_WPP.sga Pupae 12 hr after WPP CAGE -
50 Kc167_Cell_Line_Cytoplasmic_RNA.sga Kc167 Cell Line Cytoplasmic RNA CAGE -
51 Adult_Mated_Male_4_days_Post-eclosion_Testes_rep1.sga Adult Mated Male 4 days Post-eclosion Testes rep1 CAGE -
52 Adult_Mated_Male_4_days_Post-eclosion_Testes_rep2.sga Adult Mated Male 4 days Post-eclosion Testes rep2 CAGE -
53 Kc167_Cell_Line_Nuclear_RNA.sga Kc167 Cell Line Nuclear RNA CAGE -
54 S2-DRSC_Cell_Line.sga S2-DRSC Cell Line CAGE -

Technical Notes

This dataset was lifted over from dm3.

References

Last update: 7 Dec 2016