MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database

Description

This series contains transcription start site mapping from MachiBase. The data were generated with the oligo-capping technology.

Source

The source data were downloaded from:

Samples

From D. mealnogaster(Aug 2014 BDGP Rel6 + ISO1 MT/dm6).

Filename Description Feature GEO-ID
1 embryo_oligocap.sga Embryo oligo-capping TSS -
2 larva_oligocap.sga Larva oligo-capping TSS -
3 youngFemale_oligocap.sga Young female oligo-capping TSS -
4 youngMale_oligocap.sga Young male oligo-capping TSS -
5 oldFemale_oligocap.sga Old female oligo-capping TSS -
6 oldMale_oligocap.sga Old male oligo-capping TSS -
7 s2_oligocap.sga S2 cells oligo-capping TSS -
8 all_oligocap.sga All tissues oligo-capping TSS -

Technical Notes

This dataset was lifted over from dm3.

References

  1. Ahsan B, Saito TL, Hashimoto S, Muramatsu K, Tsuda M et al.
    MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database. Nucleic Acids Res. 2009 Jan;37(Database issue):D49-53. PMID: 18842623

Genome browser viewable files

WIG files are available at:

This file corresponds to the sample "All tissues, oligo-capping".