Bottomly 2010, Beta-catenin binding region in colon cancer

Description

ChIP-seq experiment investigating the binding of β-catenin in HCT116 human colon cancer cells.

Source

Samples

From Human Mar. 2006 (GRCh36/hg18) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 SRR038620.sga HCT116 colon cancer cells|b-canenin betaCATENIN -

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to hg18 genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-seq).

References

Last update: 4 Jan 2016