DBTSS6, TSS database from full-length cDNAs and Solexatags

Description

DBTSS (DataBase of Transcriptional Start Sites) represents exact positions of transcriptional start sites (TSSs) in the genome based on a full length cDNA collection and a unique experimentally validated TSS sequencing method, TSS Seq.

Source

Solexa Tag Data were downloaded from: DBTSS6
Input file format: Tab-dlimited TXT

Samples

From Human Mar. 2006 (NCBI36/hg18) Assembly

Filename Description Feature GEO-ID
1 DBTSS6_cDNA.sga DBTSS from cDNA DBTSS -
2 DBTSS6_hek293_solexatag.sga DBTSS from Solexa, hek293 cells DBTSS -
3 DBTSS6_mcf7_solexatag.sga DBTSS from Solexa, mcf7 cells DBTSS -

Technical Notes

The source files are the following:

The contents of the tab-delimited source files are the following:

The source format is a non-standard tab-delimited format that has been converted to SGA via an ad hoc perl script.

References

  1. Wakaguri H, Yamashita R, Suzuki Y, Sugano S, Nakai K
    DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res. 2008 Jan;36(Database issue):D97-101. Epub 2007 Oct 16. PMID: 17942421

Genome browser viewable files

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