Do 2012, Mutant p53 and IgG in MDAH087 fibroblast cell line
Analysis of p53 and IgG in the Li-Fraumeni cell line MDAH087, which expresses only the R248W mtp53 protein
(Bischoff et al. 1990).
- Raw data was downloaded from: FTP : SRR448
Input file format: SRA
From Human Mar. 2006 (GRCh36/hg18) Assembly.
FASTQ files were extracted from SRA files using fastq-dump
toolkit v2.5.0) and mapped to hg18 genome
using Bowtie v0.12.8. SAM
files were then converted into bam
using samtools v0.1.14
and to bed using bamToBed v2.12.0
conversion was carried out using bed2sga.pl
Do PM, Varanasi L, Fan S, Li C, Kubacka I, Newman V, Chauhan K, Daniels SR, Boccetta M, Garrett MR, Li R, Martinez LA
Mutant p53 cooperates with ETS2 to promote etoposide resistance.
Genes Dev. 2012 Apr 15;26(8):830-45. doi: 10.1101/gad.181685.111.
Mutant p53 cooperates with ETS2 to promote etoposide resistance [ChIP-Seq]