Schones 2008, CD4+ cells, nucleosome profiling, GSE10437

Description

ChIP-seq against posttranstional variant phospo Ser5 of RNA Polymerase II (Pol II) in both resting and activated human CD4+ T cells.
Nucleosome mapped by MNase digestion.

Source

Samples

From Human Mar. 2006 (GRCh36/hg18) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 PolII-act-unP.sga CD4+ Activated Unphosphorylated PolII PolII-unP -
2 PolII-rest-unP.sga CD4+ Resting Unphosphorylated PolII PolII-unP -
3 PolII-act-S5P.sga CD4+ Activated Ser5 phosphorylated PolII PolII-S5P -
4 PolII-rest-S5P.sga CD4+ Resting Ser5 phosphorylated PolII PolII-S5P -

DNase FAIRE data:

Filename Description Feature GEO-ID
1 ActivatedNucleosomes.sga CD4+ Activated Nucleosomes MNase -
2 RestingNucleosomes.sga CD4+ Resting Nucleosomes MNase -

Technical Notes

BED files were converted to SGA using bed2sga.pl (ChIP-Seq v. 1.5.2).

References

Last update: 24 Mar 2016