Genomic list of motif instances from the HOCOMOCOv9 matrices with a 0.0001 pvalue.

Description

This serie contains list of motif instance generated by scaning the human genome using all the PWMs available in the HOCOMOCO v9 collection. The score limit was set to a score corresponding to a pvalue of 0.0001, using genome backgroud frequencies of 0.29, 0.21, 0.21, 0.29 for A, C, G and T respectively.

Source

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

Sequence-derived:

Filename Description Feature GEO-ID
1 genomic_hit_AHR_si.sga AHR|AHR_si AHR -
2 genomic_hit_AIRE_f2.sga AIRE|AIRE_f2 AIRE -
3 genomic_hit_ALX1_si.sga ALX1|ALX1_si ALX1 -
4 genomic_hit_ANDR_do.sga ANDR|ANDR_do ANDR -
5 genomic_hit_AP2A_f2.sga AP2A|AP2A_f2 AP2A -
6 genomic_hit_AP2B_f1.sga AP2B|AP2B_f1 AP2B -
7 genomic_hit_AP2C_f1.sga AP2C|AP2C_f1 AP2C -
8 genomic_hit_AP2D_f1.sga AP2D|AP2D_f1 AP2D -
9 genomic_hit_ARI3A_do.sga ARI3A|ARI3A_do ARI3A -
10 genomic_hit_ARI3A_f1.sga ARI3A|ARI3A_f1 ARI3A -
11 genomic_hit_ARI5B_f1.sga ARI5B|ARI5B_f1 ARI5B -
12 genomic_hit_ARNT2_si.sga ARNT2|ARNT2_si ARNT2 -
13 genomic_hit_ARNT_f1.sga ARNT|ARNT_f1 ARNT -
14 genomic_hit_ATF1_si.sga ATF1|ATF1_si ATF1 -
15 genomic_hit_ATF2+ATF4_f1.sga ATF2+ATF4|ATF2+ATF4_f1 ATF2+ATF4 -
16 genomic_hit_ATF3_f1.sga ATF3|ATF3_f1 ATF3 -
17 genomic_hit_ATF5_si.sga ATF5|ATF5_si ATF5 -
18 genomic_hit_ATF6A_si.sga ATF6A|ATF6A_si ATF6A -
19 genomic_hit_BACH1_si.sga BACH1|BACH1_si BACH1 -
20 genomic_hit_BARX2_si.sga BARX2|BARX2_si BARX2 -
21 genomic_hit_BATF_si.sga BATF|BATF_si BATF -
22 genomic_hit_BCL6_f1.sga BCL6|BCL6_f1 BCL6 -
23 genomic_hit_BHE40_f2.sga BHE40|BHE40_f2 BHE40 -
24 genomic_hit_BHE41_f1.sga BHE41|BHE41_f1 BHE41 -
25 genomic_hit_BMAL1_f1.sga BMAL1|BMAL1_f1 BMAL1 -
26 genomic_hit_BPTF_si.sga BPTF|BPTF_si BPTF -
27 genomic_hit_BRAC_si.sga BRAC|BRAC_si BRAC -
28 genomic_hit_BRCA1_f1.sga BRCA1|BRCA1_f1 BRCA1 -
29 genomic_hit_CDC5L_si.sga CDC5L|CDC5L_si CDC5L -
30 genomic_hit_CDX1_f1.sga CDX1|CDX1_f1 CDX1 -
31 genomic_hit_CDX2_f1.sga CDX2|CDX2_f1 CDX2 -
32 genomic_hit_CEBPA_do.sga CEBPA|CEBPA_do CEBPA -
33 genomic_hit_CEBPB_f1.sga CEBPB|CEBPB_f1 CEBPB -
34 genomic_hit_CEBPD_f1.sga CEBPD|CEBPD_f1 CEBPD -
35 genomic_hit_CEBPE_f1.sga CEBPE|CEBPE_f1 CEBPE -
36 genomic_hit_CEBPG_si.sga CEBPG|CEBPG_si CEBPG -
37 genomic_hit_CEBPZ_si.sga CEBPZ|CEBPZ_si CEBPZ -
38 genomic_hit_COE1_f2.sga COE1|COE1_f2 COE1 -
39 genomic_hit_COT1_f1.sga COT1|COT1_f1 COT1 -
40 genomic_hit_COT1_si.sga COT1|COT1_si COT1 -
41 genomic_hit_COT2_f1.sga COT2|COT2_f1 COT2 -
42 genomic_hit_COT2_f2.sga COT2|COT2_f2 COT2 -
43 genomic_hit_CREB1_f1.sga CREB1|CREB1_f1 CREB1 -
44 genomic_hit_CREM_f1.sga CREM|CREM_f1 CREM -
45 genomic_hit_CRX_si.sga CRX|CRX_si CRX -
46 genomic_hit_CTCF_f2.sga CTCF|CTCF_f2 CTCF -
47 genomic_hit_CUX1_f1.sga CUX1|CUX1_f1 CUX1 -
48 genomic_hit_CXXC1_si.sga CXXC1|CXXC1_si CXXC1 -
49 genomic_hit_DBP_si.sga DBP|DBP_si DBP -
50 genomic_hit_DDIT3_f1.sga DDIT3|DDIT3_f1 DDIT3 -
51 genomic_hit_DLX2_f1.sga DLX2|DLX2_f1 DLX2 -
52 genomic_hit_DLX3_do.sga DLX3|DLX3_do DLX3 -
53 genomic_hit_E2F1_f2.sga E2F1|E2F1_f2 E2F1 -
54 genomic_hit_E2F2_f1.sga E2F2|E2F2_f1 E2F2 -
55 genomic_hit_E2F3_si.sga E2F3|E2F3_si E2F3 -
56 genomic_hit_E2F4_do.sga E2F4|E2F4_do E2F4 -
57 genomic_hit_E2F5_do.sga E2F5|E2F5_do E2F5 -
58 genomic_hit_E2F6_f1.sga E2F6|E2F6_f1 E2F6 -
59 genomic_hit_E2F7_f1.sga E2F7|E2F7_f1 E2F7 -
60 genomic_hit_E4F1_f1.sga E4F1|E4F1_f1 E4F1 -
61 genomic_hit_EGR1_f2.sga EGR1|EGR1_f2 EGR1 -
62 genomic_hit_EGR2_si.sga EGR2|EGR2_si EGR2 -
63 genomic_hit_EGR3_f1.sga EGR3|EGR3_f1 EGR3 -
64 genomic_hit_EGR4_f1.sga EGR4|EGR4_f1 EGR4 -
65 genomic_hit_EHF_si.sga EHF|EHF_si EHF -
66 genomic_hit_ELF1_f1.sga ELF1|ELF1_f1 ELF1 -
67 genomic_hit_ELF2_f1.sga ELF2|ELF2_f1 ELF2 -
68 genomic_hit_ELF3_f1.sga ELF3|ELF3_f1 ELF3 -
69 genomic_hit_ELF5_f1.sga ELF5|ELF5_f1 ELF5 -
70 genomic_hit_ELK1_f1.sga ELK1|ELK1_f1 ELK1 -
71 genomic_hit_ELK3_f1.sga ELK3|ELK3_f1 ELK3 -
72 genomic_hit_ELK4_f1.sga ELK4|ELK4_f1 ELK4 -
73 genomic_hit_ENOA_si.sga ENOA|ENOA_si ENOA -
74 genomic_hit_EOMES_f1.sga EOMES|EOMES_f1 EOMES -
75 genomic_hit_EPAS1_si.sga EPAS1|EPAS1_si EPAS1 -
76 genomic_hit_ERG_f1.sga ERG|ERG_f1 ERG -
77 genomic_hit_ERR1_f1.sga ERR1|ERR1_f1 ERR1 -
78 genomic_hit_ERR2_f1.sga ERR2|ERR2_f1 ERR2 -
79 genomic_hit_ERR3_f1.sga ERR3|ERR3_f1 ERR3 -
80 genomic_hit_ESR1_do.sga ESR1|ESR1_do ESR1 -
81 genomic_hit_ESR2_do.sga ESR2|ESR2_do ESR2 -
82 genomic_hit_ESR2_si.sga ESR2|ESR2_si ESR2 -
83 genomic_hit_ETS1_si.sga ETS1|ETS1_si ETS1 -
84 genomic_hit_ETS2_f1.sga ETS2|ETS2_f1 ETS2 -
85 genomic_hit_ETV4_f1.sga ETV4|ETV4_f1 ETV4 -
86 genomic_hit_ETV5_f1.sga ETV5|ETV5_f1 ETV5 -
87 genomic_hit_ETV7_si.sga ETV7|ETV7_si ETV7 -
88 genomic_hit_EVI1_f1.sga EVI1|EVI1_f1 EVI1 -
89 genomic_hit_FEV_f1.sga FEV|FEV_f1 FEV -
90 genomic_hit_FLI1_f1.sga FLI1|FLI1_f1 FLI1 -
91 genomic_hit_FOSB_f1.sga FOSB|FOSB_f1 FOSB -
92 genomic_hit_FOSL1_f2.sga FOSL1|FOSL1_f2 FOSL1 -
93 genomic_hit_FOSL2_f1.sga FOSL2|FOSL2_f1 FOSL2 -
94 genomic_hit_FOS_si.sga FOS|FOS_si FOS -
95 genomic_hit_FOXA1_f1.sga FOXA1|FOXA1_f1 FOXA1 -
96 genomic_hit_FOXA2_f1.sga FOXA2|FOXA2_f1 FOXA2 -
97 genomic_hit_FOXA3_f1.sga FOXA3|FOXA3_f1 FOXA3 -
98 genomic_hit_FOXC1_f1.sga FOXC1|FOXC1_f1 FOXC1 -
99 genomic_hit_FOXC2_f1.sga FOXC2|FOXC2_f1 FOXC2 -
100 genomic_hit_FOXD1_si.sga FOXD1|FOXD1_si FOXD1 -
101 genomic_hit_FOXD3_f1.sga FOXD3|FOXD3_f1 FOXD3 -
102 genomic_hit_FOXF1_f1.sga FOXF1|FOXF1_f1 FOXF1 -
103 genomic_hit_FOXF2_f1.sga FOXF2|FOXF2_f1 FOXF2 -
104 genomic_hit_FOXI1_f1.sga FOXI1|FOXI1_f1 FOXI1 -
105 genomic_hit_FOXJ2_f1.sga FOXJ2|FOXJ2_f1 FOXJ2 -
106 genomic_hit_FOXJ3_f2.sga FOXJ3|FOXJ3_f2 FOXJ3 -
107 genomic_hit_FOXJ3_si.sga FOXJ3|FOXJ3_si FOXJ3 -
108 genomic_hit_FOXM1_f1.sga FOXM1|FOXM1_f1 FOXM1 -
109 genomic_hit_FOXO1_si.sga FOXO1|FOXO1_si FOXO1 -
110 genomic_hit_FOXO3_si.sga FOXO3|FOXO3_si FOXO3 -
111 genomic_hit_FOXO4_f1.sga FOXO4|FOXO4_f1 FOXO4 -
112 genomic_hit_FOXP2_si.sga FOXP2|FOXP2_si FOXP2 -
113 genomic_hit_FOXP3_f1.sga FOXP3|FOXP3_f1 FOXP3 -
114 genomic_hit_FOXQ1_f1.sga FOXQ1|FOXQ1_f1 FOXQ1 -
115 genomic_hit_FUBP1_f1.sga FUBP1|FUBP1_f1 FUBP1 -
116 genomic_hit_GABP1+GABP2_f1.sga GABP1+GABP2|GABP1+GABP2_f1 GABP1+GABP2 -
117 genomic_hit_GABPA_f1.sga GABPA|GABPA_f1 GABPA -
118 genomic_hit_GATA1_si.sga GATA1|GATA1_si GATA1 -
119 genomic_hit_GATA2_si.sga GATA2|GATA2_si GATA2 -
120 genomic_hit_GATA3_si.sga GATA3|GATA3_si GATA3 -
121 genomic_hit_GATA4_f1.sga GATA4|GATA4_f1 GATA4 -
122 genomic_hit_GATA5_f1.sga GATA5|GATA5_f1 GATA5 -
123 genomic_hit_GATA6_f2.sga GATA6|GATA6_f2 GATA6 -
124 genomic_hit_GCM1_f1.sga GCM1|GCM1_f1 GCM1 -
125 genomic_hit_GCR_do.sga GCR|GCR_do GCR -
126 genomic_hit_GCR_si.sga GCR|GCR_si GCR -
127 genomic_hit_GFI1B_f1.sga GFI1B|GFI1B_f1 GFI1B -
128 genomic_hit_GFI1_f1.sga GFI1|GFI1_f1 GFI1 -
129 genomic_hit_GLI1_f1.sga GLI1|GLI1_f1 GLI1 -
130 genomic_hit_GLI2_f1.sga GLI2|GLI2_f1 GLI2 -
131 genomic_hit_GLI3_si.sga GLI3|GLI3_si GLI3 -
132 genomic_hit_GLIS3_f1.sga GLIS3|GLIS3_f1 GLIS3 -
133 genomic_hit_HAND1_si.sga HAND1|HAND1_si HAND1 -
134 genomic_hit_HBP1_f1.sga HBP1|HBP1_f1 HBP1 -
135 genomic_hit_HEN1_si.sga HEN1|HEN1_si HEN1 -
136 genomic_hit_HES1_f1.sga HES1|HES1_f1 HES1 -
137 genomic_hit_HESX1_f1.sga HESX1|HESX1_f1 HESX1 -
138 genomic_hit_HEY2_f1.sga HEY2|HEY2_f1 HEY2 -
139 genomic_hit_HIC1_si.sga HIC1|HIC1_si HIC1 -
140 genomic_hit_HIF1A_si.sga HIF1A|HIF1A_si HIF1A -
141 genomic_hit_HINFP_f1.sga HINFP|HINFP_f1 HINFP -
142 genomic_hit_HLF_si.sga HLF|HLF_si HLF -
143 genomic_hit_HLTF_f1.sga HLTF|HLTF_f1 HLTF -
144 genomic_hit_HMGA1_f1.sga HMGA1|HMGA1_f1 HMGA1 -
145 genomic_hit_HMGA2_f1.sga HMGA2|HMGA2_f1 HMGA2 -
146 genomic_hit_HNF1A_f1.sga HNF1A|HNF1A_f1 HNF1A -
147 genomic_hit_HNF1B_f1.sga HNF1B|HNF1B_f1 HNF1B -
148 genomic_hit_HNF4A_f1.sga HNF4A|HNF4A_f1 HNF4A -
149 genomic_hit_HNF4G_f1.sga HNF4G|HNF4G_f1 HNF4G -
150 genomic_hit_HNF6_f1.sga HNF6|HNF6_f1 HNF6 -
151 genomic_hit_HSF1_f2.sga HSF1|HSF1_f2 HSF1 -
152 genomic_hit_HSF2_si.sga HSF2|HSF2_si HSF2 -
153 genomic_hit_HTF4_f1.sga HTF4|HTF4_f1 HTF4 -
154 genomic_hit_HXA10_f1.sga HXA10|HXA10_f1 HXA10 -
155 genomic_hit_HXA13_f1.sga HXA13|HXA13_f1 HXA13 -
156 genomic_hit_HXA1_f1.sga HXA1|HXA1_f1 HXA1 -
157 genomic_hit_HXA5_si.sga HXA5|HXA5_si HXA5 -
158 genomic_hit_HXA7_f1.sga HXA7|HXA7_f1 HXA7 -
159 genomic_hit_HXA9_f1.sga HXA9|HXA9_f1 HXA9 -
160 genomic_hit_HXB1_f1.sga HXB1|HXB1_f1 HXB1 -
161 genomic_hit_HXB6_f1.sga HXB6|HXB6_f1 HXB6 -
162 genomic_hit_HXB7_si.sga HXB7|HXB7_si HXB7 -
163 genomic_hit_HXB8_do.sga HXB8|HXB8_do HXB8 -
164 genomic_hit_HXC6_f1.sga HXC6|HXC6_f1 HXC6 -
165 genomic_hit_HXC8_f1.sga HXC8|HXC8_f1 HXC8 -
166 genomic_hit_HXD10_f1.sga HXD10|HXD10_f1 HXD10 -
167 genomic_hit_HXD13_f1.sga HXD13|HXD13_f1 HXD13 -
168 genomic_hit_HXD4_f1.sga HXD4|HXD4_f1 HXD4 -
169 genomic_hit_HXD9_f1.sga HXD9|HXD9_f1 HXD9 -
170 genomic_hit_IKZF1_f1.sga IKZF1|IKZF1_f1 IKZF1 -
171 genomic_hit_INSM1_f1.sga INSM1|INSM1_f1 INSM1 -
172 genomic_hit_IRF1_si.sga IRF1|IRF1_si IRF1 -
173 genomic_hit_IRF2_f1.sga IRF2|IRF2_f1 IRF2 -
174 genomic_hit_IRF3_f1.sga IRF3|IRF3_f1 IRF3 -
175 genomic_hit_IRF4_si.sga IRF4|IRF4_si IRF4 -
176 genomic_hit_IRF5_f1.sga IRF5|IRF5_f1 IRF5 -
177 genomic_hit_IRF7_f1.sga IRF7|IRF7_f1 IRF7 -
178 genomic_hit_IRF8_si.sga IRF8|IRF8_si IRF8 -
179 genomic_hit_IRF9_f1.sga IRF9|IRF9_f1 IRF9 -
180 genomic_hit_ISL1_f1.sga ISL1|ISL1_f1 ISL1 -
181 genomic_hit_ITF2_f1.sga ITF2|ITF2_f1 ITF2 -
182 genomic_hit_JUNB_f1.sga JUNB|JUNB_f1 JUNB -
183 genomic_hit_JUND_f1.sga JUND|JUND_f1 JUND -
184 genomic_hit_JUN_f1.sga JUN|JUN_f1 JUN -
185 genomic_hit_KAISO_f1.sga KAISO|KAISO_f1 KAISO -
186 genomic_hit_KLF15_f1.sga KLF15|KLF15_f1 KLF15 -
187 genomic_hit_KLF1_f1.sga KLF1|KLF1_f1 KLF1 -
188 genomic_hit_KLF3_f1.sga KLF3|KLF3_f1 KLF3 -
189 genomic_hit_KLF4_f2.sga KLF4|KLF4_f2 KLF4 -
190 genomic_hit_KLF6_si.sga KLF6|KLF6_si KLF6 -
191 genomic_hit_KLF8_f1.sga KLF8|KLF8_f1 KLF8 -
192 genomic_hit_LEF1_f1.sga LEF1|LEF1_f1 LEF1 -
193 genomic_hit_LHX2_f1.sga LHX2|LHX2_f1 LHX2 -
194 genomic_hit_LHX3_f1.sga LHX3|LHX3_f1 LHX3 -
195 genomic_hit_MAFA_f1.sga f1|MAFA_f1 f1 -
196 genomic_hit_MAFB_f1.sga f1|MAFB_f1 f1 -
197 genomic_hit_MAFG_si.sga si|MAFG_si si -
198 genomic_hit_MAFK_si.sga si|MAFK_si si -
199 genomic_hit_MAF_f1.sga f1|MAF_f1 f1 -
200 genomic_hit_MAX_f1.sga f1|MAX_f1 f1 -
201 genomic_hit_MAZ_f1.sga f1|MAZ_f1 f1 -
202 genomic_hit_MBD2_si.sga MBD2|MBD2_si MBD2 -
203 genomic_hit_MCR_f1.sga MCR|MCR_f1 MCR -
204 genomic_hit_MECP2_f1.sga MECP2|MECP2_f1 MECP2 -
205 genomic_hit_MEF2A_f1.sga MEF2A|MEF2A_f1 MEF2A -
206 genomic_hit_MEF2C_f1.sga MEF2C|MEF2C_f1 MEF2C -
207 genomic_hit_MEF2D_f1.sga MEF2D|MEF2D_f1 MEF2D -
208 genomic_hit_MEIS1_f2.sga MEIS1|MEIS1_f2 MEIS1 -
209 genomic_hit_MEIS2_do.sga MEIS2|MEIS2_do MEIS2 -
210 genomic_hit_MITF_f1.sga MITF|MITF_f1 MITF -
211 genomic_hit_MLXPL_f1.sga MLXPL|MLXPL_f1 MLXPL -
212 genomic_hit_MSX2_f1.sga MSX2|MSX2_f1 MSX2 -
213 genomic_hit_MTF1_f1.sga MTF1|MTF1_f1 MTF1 -
214 genomic_hit_MYBB_f1.sga MYBB|MYBB_f1 MYBB -
215 genomic_hit_MYB_f1.sga MYB|MYB_f1 MYB -
216 genomic_hit_MYCN_si.sga MYCN|MYCN_si MYCN -
217 genomic_hit_MYC_f1.sga MYC|MYC_f1 MYC -
218 genomic_hit_MYF6_f1.sga MYF6|MYF6_f1 MYF6 -
219 genomic_hit_MYOD1_f1.sga MYOD1|MYOD1_f1 MYOD1 -
220 genomic_hit_MYOG_f1.sga MYOG|MYOG_f1 MYOG -
221 genomic_hit_MZF1_f1.sga MZF1|MZF1_f1 MZF1 -
222 genomic_hit_NANOG_f1.sga NANOG|NANOG_f1 NANOG -
223 genomic_hit_NDF1_f1.sga NDF1|NDF1_f1 NDF1 -
224 genomic_hit_NF2L1_f1.sga NF2L1|NF2L1_f1 NF2L1 -
225 genomic_hit_NF2L2_si.sga NF2L2|NF2L2_si NF2L2 -
226 genomic_hit_NFAC1_do.sga NFAC1|NFAC1_do NFAC1 -
227 genomic_hit_NFAC1_si.sga NFAC1|NFAC1_si NFAC1 -
228 genomic_hit_NFAC2_f1.sga NFAC2|NFAC2_f1 NFAC2 -
229 genomic_hit_NFAC3_f1.sga NFAC3|NFAC3_f1 NFAC3 -
230 genomic_hit_NFAC4_f1.sga NFAC4|NFAC4_f1 NFAC4 -
231 genomic_hit_NFAT5_f1.sga NFAT5|NFAT5_f1 NFAT5 -
232 genomic_hit_NFE2_f2.sga NFE2|NFE2_f2 NFE2 -
233 genomic_hit_NFIA+NFIB+NFIC+NFIX_f2.sga NFIA+NFIB+NFIC+NFIX|NFIA+NFIB+NFIC+NFIX_f2 NFIA+NFIB+NFIC+NFIX -
234 genomic_hit_NFIA+NFIB+NFIC+NFIX_si.sga NFIA+NFIB+NFIC+NFIX|NFIA+NFIB+NFIC+NFIX_si NFIA+NFIB+NFIC+NFIX -
235 genomic_hit_NFIL3_si.sga NFIL3|NFIL3_si NFIL3 -
236 genomic_hit_NFKB1_f1.sga NFKB1|NFKB1_f1 NFKB1 -
237 genomic_hit_NFKB2_f1.sga NFKB2|NFKB2_f1 NFKB2 -
238 genomic_hit_NFYA_f1.sga NFYA|NFYA_f1 NFYA -
239 genomic_hit_NFYB_f1.sga NFYB|NFYB_f1 NFYB -
240 genomic_hit_NFYC_f1.sga NFYC|NFYC_f1 NFYC -
241 genomic_hit_NKX21_f1.sga NKX21|NKX21_f1 NKX21 -
242 genomic_hit_NKX22_si.sga NKX22|NKX22_si NKX22 -
243 genomic_hit_NKX25_f1.sga NKX25|NKX25_f1 NKX25 -
244 genomic_hit_NKX28_f1.sga NKX28|NKX28_f1 NKX28 -
245 genomic_hit_NKX31_si.sga NKX31|NKX31_si NKX31 -
246 genomic_hit_NKX32_f1.sga NKX32|NKX32_f1 NKX32 -
247 genomic_hit_NOBOX_si.sga NOBOX|NOBOX_si NOBOX -
248 genomic_hit_NR0B1_si.sga NR0B1|NR0B1_si NR0B1 -
249 genomic_hit_NR1D1_f1.sga NR1D1|NR1D1_f1 NR1D1 -
250 genomic_hit_NR1H2_f1.sga NR1H2|NR1H2_f1 NR1H2 -
251 genomic_hit_NR1H4_f1.sga NR1H4|NR1H4_f1 NR1H4 -
252 genomic_hit_NR1I2_f2.sga NR1I2|NR1I2_f2 NR1I2 -
253 genomic_hit_NR1I2_si.sga NR1I2|NR1I2_si NR1I2 -
254 genomic_hit_NR1I3_f2.sga NR1I3|NR1I3_f2 NR1I3 -
255 genomic_hit_NR1I3_si.sga NR1I3|NR1I3_si NR1I3 -
256 genomic_hit_NR2C1_si.sga NR2C1|NR2C1_si NR2C1 -
257 genomic_hit_NR2C2_f1.sga NR2C2|NR2C2_f1 NR2C2 -
258 genomic_hit_NR2E3_f1.sga NR2E3|NR2E3_f1 NR2E3 -
259 genomic_hit_NR2F6_f1.sga NR2F6|NR2F6_f1 NR2F6 -
260 genomic_hit_NR4A1_f1.sga NR4A1|NR4A1_f1 NR4A1 -
261 genomic_hit_NR4A2_si.sga NR4A2|NR4A2_si NR4A2 -
262 genomic_hit_NR4A3_f1.sga NR4A3|NR4A3_f1 NR4A3 -
263 genomic_hit_NR5A2_f1.sga NR5A2|NR5A2_f1 NR5A2 -
264 genomic_hit_NR6A1_do.sga NR6A1|NR6A1_do NR6A1 -
265 genomic_hit_NRF1_f1.sga NRF1|NRF1_f1 NRF1 -
266 genomic_hit_ONEC2_si.sga ONEC2|ONEC2_si ONEC2 -
267 genomic_hit_OTX1_f1.sga OTX1|OTX1_f1 OTX1 -
268 genomic_hit_OTX2_si.sga OTX2|OTX2_si OTX2 -
269 genomic_hit_OVOL1_f1.sga OVOL1|OVOL1_f1 OVOL1 -
270 genomic_hit_P53_f2.sga P53|P53_f2 P53 -
271 genomic_hit_P63_si.sga P63|P63_si P63 -
272 genomic_hit_P73_si.sga P73|P73_si P73 -
273 genomic_hit_PAX2_f1.sga PAX2|PAX2_f1 PAX2 -
274 genomic_hit_PAX2_si.sga PAX2|PAX2_si PAX2 -
275 genomic_hit_PAX5_f1.sga PAX5|PAX5_f1 PAX5 -
276 genomic_hit_PAX5_si.sga PAX5|PAX5_si PAX5 -
277 genomic_hit_PAX6_f1.sga PAX6|PAX6_f1 PAX6 -
278 genomic_hit_PAX8_f1.sga PAX8|PAX8_f1 PAX8 -
279 genomic_hit_PBX1_do.sga PBX1|PBX1_do PBX1 -
280 genomic_hit_PBX2_f1.sga PBX2|PBX2_f1 PBX2 -
281 genomic_hit_PBX3_f2.sga PBX3|PBX3_f2 PBX3 -
282 genomic_hit_PDX1_do.sga PDX1|PDX1_do PDX1 -
283 genomic_hit_PEBB_f1.sga PEBB|PEBB_f1 PEBB -
284 genomic_hit_PIT1_f1.sga PIT1|PIT1_f1 PIT1 -
285 genomic_hit_PITX2_si.sga PITX2|PITX2_si PITX2 -
286 genomic_hit_PKNX1_si.sga PKNX1|PKNX1_si PKNX1 -
287 genomic_hit_PLAG1_f1.sga PLAG1|PLAG1_f1 PLAG1 -
288 genomic_hit_PLAG1_si.sga PLAG1|PLAG1_si PLAG1 -
289 genomic_hit_PLAL1_si.sga PLAL1|PLAL1_si PLAL1 -
290 genomic_hit_PO2F1_f1.sga PO2F1|PO2F1_f1 PO2F1 -
291 genomic_hit_PO2F2_si.sga PO2F2|PO2F2_si PO2F2 -
292 genomic_hit_PO3F1_f1.sga PO3F1|PO3F1_f1 PO3F1 -
293 genomic_hit_PO3F2_si.sga PO3F2|PO3F2_si PO3F2 -
294 genomic_hit_PO4F2_si.sga PO4F2|PO4F2_si PO4F2 -
295 genomic_hit_PO5F1_do.sga PO5F1|PO5F1_do PO5F1 -
296 genomic_hit_PO6F1_f1.sga PO6F1|PO6F1_f1 PO6F1 -
297 genomic_hit_PPARA_f1.sga PPARA|PPARA_f1 PPARA -
298 genomic_hit_PPARA_f2.sga PPARA|PPARA_f2 PPARA -
299 genomic_hit_PPARD_f1.sga PPARD|PPARD_f1 PPARD -
300 genomic_hit_PPARG_f1.sga PPARG|PPARG_f1 PPARG -
301 genomic_hit_PPARG_si.sga PPARG|PPARG_si PPARG -
302 genomic_hit_PRDM1_f1.sga PRDM1|PRDM1_f1 PRDM1 -
303 genomic_hit_PRGR_do.sga PRGR|PRGR_do PRGR -
304 genomic_hit_PRGR_f1.sga PRGR|PRGR_f1 PRGR -
305 genomic_hit_PROP1_f1.sga PROP1|PROP1_f1 PROP1 -
306 genomic_hit_PRRX1_f1.sga PRRX1|PRRX1_f1 PRRX1 -
307 genomic_hit_PRRX2_f1.sga PRRX2|PRRX2_f1 PRRX2 -
308 genomic_hit_PTF1A_f1.sga PTF1A|PTF1A_f1 PTF1A -
309 genomic_hit_PURA_f1.sga PURA|PURA_f1 PURA -
310 genomic_hit_RARA_f1.sga RARA|RARA_f1 RARA -
311 genomic_hit_RARA_f2.sga RARA|RARA_f2 RARA -
312 genomic_hit_RARB_f1.sga RARB|RARB_f1 RARB -
313 genomic_hit_RARG_do.sga RARG|RARG_do RARG -
314 genomic_hit_RARG_f1.sga RARG|RARG_f1 RARG -
315 genomic_hit_RELB_si.sga RELB|RELB_si RELB -
316 genomic_hit_REL_do.sga REL|REL_do REL -
317 genomic_hit_REST_f1.sga REST|REST_f1 REST -
318 genomic_hit_RFX1_f1.sga RFX1|RFX1_f1 RFX1 -
319 genomic_hit_RFX2_f1.sga RFX2|RFX2_f1 RFX2 -
320 genomic_hit_RFX3_f1.sga RFX3|RFX3_f1 RFX3 -
321 genomic_hit_RORA_f1.sga RORA|RORA_f1 RORA -
322 genomic_hit_RORG_f1.sga RORG|RORG_f1 RORG -
323 genomic_hit_RREB1_si.sga RREB1|RREB1_si RREB1 -
324 genomic_hit_RUNX1_f1.sga RUNX1|RUNX1_f1 RUNX1 -
325 genomic_hit_RUNX2_f1.sga RUNX2|RUNX2_f1 RUNX2 -
326 genomic_hit_RUNX3_si.sga RUNX3|RUNX3_si RUNX3 -
327 genomic_hit_RXRA_f1.sga RXRA|RXRA_f1 RXRA -
328 genomic_hit_RXRB_f1.sga RXRB|RXRB_f1 RXRB -
329 genomic_hit_RXRG_f1.sga RXRG|RXRG_f1 RXRG -
330 genomic_hit_SMAD1_si.sga SMAD1|SMAD1_si SMAD1 -
331 genomic_hit_SMAD2_si.sga SMAD2|SMAD2_si SMAD2 -
332 genomic_hit_SMAD3_f1.sga SMAD3|SMAD3_f1 SMAD3 -
333 genomic_hit_SMAD4_si.sga SMAD4|SMAD4_si SMAD4 -
334 genomic_hit_SMRC1_f1.sga SMRC1|SMRC1_f1 SMRC1 -
335 genomic_hit_SNAI1_f1.sga SNAI1|SNAI1_f1 SNAI1 -
336 genomic_hit_SNAI2_f1.sga SNAI2|SNAI2_f1 SNAI2 -
337 genomic_hit_SOX10_si.sga SOX10|SOX10_si SOX10 -
338 genomic_hit_SOX13_f1.sga SOX13|SOX13_f1 SOX13 -
339 genomic_hit_SOX15_f1.sga SOX15|SOX15_f1 SOX15 -
340 genomic_hit_SOX17_f2.sga SOX17|SOX17_f2 SOX17 -
341 genomic_hit_SOX18_f1.sga SOX18|SOX18_f1 SOX18 -
342 genomic_hit_SOX2_f1.sga SOX2|SOX2_f1 SOX2 -
343 genomic_hit_SOX4_f1.sga SOX4|SOX4_f1 SOX4 -
344 genomic_hit_SOX5_f1.sga SOX5|SOX5_f1 SOX5 -
345 genomic_hit_SOX9_f1.sga SOX9|SOX9_f1 SOX9 -
346 genomic_hit_SP1_f1.sga SP1|SP1_f1 SP1 -
347 genomic_hit_SP1_f2.sga SP1|SP1_f2 SP1 -
348 genomic_hit_SP2_si.sga SP2|SP2_si SP2 -
349 genomic_hit_SP3_f1.sga SP3|SP3_f1 SP3 -
350 genomic_hit_SP4_f1.sga SP4|SP4_f1 SP4 -
351 genomic_hit_SPI1_si.sga SPI1|SPI1_si SPI1 -
352 genomic_hit_SPIB_f1.sga SPIB|SPIB_f1 SPIB -
353 genomic_hit_SPZ1_f1.sga SPZ1|SPZ1_f1 SPZ1 -
354 genomic_hit_SRBP1_f2.sga SRBP1|SRBP1_f2 SRBP1 -
355 genomic_hit_SRBP2_f1.sga SRBP2|SRBP2_f1 SRBP2 -
356 genomic_hit_SRF_do.sga SRF|SRF_do SRF -
357 genomic_hit_SRY_f1.sga SRY|SRY_f1 SRY -
358 genomic_hit_STA5A_do.sga STA5A|STA5A_do STA5A -
359 genomic_hit_STA5B_f1.sga STA5B|STA5B_f1 STA5B -
360 genomic_hit_STAT1_f2.sga STAT1|STAT1_f2 STAT1 -
361 genomic_hit_STAT2_f1.sga STAT2|STAT2_f1 STAT2 -
362 genomic_hit_STAT3_si.sga STAT3|STAT3_si STAT3 -
363 genomic_hit_STAT4_si.sga STAT4|STAT4_si STAT4 -
364 genomic_hit_STAT6_do.sga STAT6|STAT6_do STAT6 -
365 genomic_hit_STF1_f1.sga STF1|STF1_f1 STF1 -
366 genomic_hit_SUH_f1.sga SUH|SUH_f1 SUH -
367 genomic_hit_TAL1_f1.sga TAL1|TAL1_f1 TAL1 -
368 genomic_hit_TAL1_f2.sga TAL1|TAL1_f2 TAL1 -
369 genomic_hit_TBP_f1.sga TBP|TBP_f1 TBP -
370 genomic_hit_TBX2_f1.sga TBX2|TBX2_f1 TBX2 -
371 genomic_hit_TBX3_f1.sga TBX3|TBX3_f1 TBX3 -
372 genomic_hit_TBX5_si.sga TBX5|TBX5_si TBX5 -
373 genomic_hit_TCF7_f1.sga TCF7|TCF7_f1 TCF7 -
374 genomic_hit_TEAD1_f1.sga TEAD1|TEAD1_f1 TEAD1 -
375 genomic_hit_TEAD3_si.sga TEAD3|TEAD3_si TEAD3 -
376 genomic_hit_TEAD4_f1.sga TEAD4|TEAD4_f1 TEAD4 -
377 genomic_hit_TEF_f1.sga TEF|TEF_f1 TEF -
378 genomic_hit_TF65_f2.sga TF65|TF65_f2 TF65 -
379 genomic_hit_TF7L2_f1.sga TF7L2|TF7L2_f1 TF7L2 -
380 genomic_hit_TFAP4_si.sga TFAP4|TFAP4_si TFAP4 -
381 genomic_hit_TFCP2_f1.sga TFCP2|TFCP2_f1 TFCP2 -
382 genomic_hit_TFDP1_f1.sga TFDP1|TFDP1_f1 TFDP1 -
383 genomic_hit_TFE2_f2.sga TFE2|TFE2_f2 TFE2 -
384 genomic_hit_TFE3_f1.sga TFE3|TFE3_f1 TFE3 -
385 genomic_hit_TFEB_f1.sga TFEB|TFEB_f1 TFEB -
386 genomic_hit_TGIF1_f1.sga TGIF1|TGIF1_f1 TGIF1 -
387 genomic_hit_TGIF1_si.sga TGIF1|TGIF1_si TGIF1 -
388 genomic_hit_THA_f1.sga THA|THA_f1 THA -
389 genomic_hit_THA_f2.sga THA|THA_f2 THA -
390 genomic_hit_THB_do.sga THB|THB_do THB -
391 genomic_hit_THB_f1.sga THB|THB_f1 THB -
392 genomic_hit_TLX1_f1.sga TLX1|TLX1_f1 TLX1 -
393 genomic_hit_TLX1_f2.sga TLX1|TLX1_f2 TLX1 -
394 genomic_hit_TWST1_f1.sga TWST1|TWST1_f1 TWST1 -
395 genomic_hit_TYY1_f2.sga TYY1|TYY1_f2 TYY1 -
396 genomic_hit_UBIP1_f1.sga UBIP1|UBIP1_f1 UBIP1 -
397 genomic_hit_USF1_f1.sga USF1|USF1_f1 USF1 -
398 genomic_hit_USF2_f1.sga USF2|USF2_f1 USF2 -
399 genomic_hit_VDR_f1.sga VDR|VDR_f1 VDR -
400 genomic_hit_VDR_f2.sga VDR|VDR_f2 VDR -
401 genomic_hit_VSX2_si.sga VSX2|VSX2_si VSX2 -
402 genomic_hit_WT1_f1.sga WT1|WT1_f1 WT1 -
403 genomic_hit_XBP1_f1.sga XBP1|XBP1_f1 XBP1 -
404 genomic_hit_YBOX1_f2.sga YBOX1|YBOX1_f2 YBOX1 -
405 genomic_hit_ZBT7A_f1.sga ZBT7A|ZBT7A_f1 ZBT7A -
406 genomic_hit_ZBT7B_si.sga ZBT7B|ZBT7B_si ZBT7B -
407 genomic_hit_ZBTB4!METH_f1.sga ZBTB4!METH|ZBTB4!METH_f1 ZBTB4!METH -
408 genomic_hit_ZBTB4_si.sga ZBTB4|ZBTB4_si ZBTB4 -
409 genomic_hit_ZBTB6_si.sga ZBTB6|ZBTB6_si ZBTB6 -
410 genomic_hit_ZEB1_do.sga ZEB1|ZEB1_do ZEB1 -
411 genomic_hit_ZEP1_f1.sga ZEP1|ZEP1_f1 ZEP1 -
412 genomic_hit_ZEP2_si.sga ZEP2|ZEP2_si ZEP2 -
413 genomic_hit_ZFHX3_f1.sga ZFHX3|ZFHX3_f1 ZFHX3 -
414 genomic_hit_ZFX_f1.sga ZFX|ZFX_f1 ZFX -
415 genomic_hit_ZIC1_f1.sga ZIC1|ZIC1_f1 ZIC1 -
416 genomic_hit_ZIC2_f1.sga ZIC2|ZIC2_f1 ZIC2 -
417 genomic_hit_ZIC3_f1.sga ZIC3|ZIC3_f1 ZIC3 -
418 genomic_hit_ZN143_si.sga ZN143|ZN143_si ZN143 -
419 genomic_hit_ZN148_si.sga ZN148|ZN148_si ZN148 -
420 genomic_hit_ZN219_f1.sga ZN219|ZN219_f1 ZN219 -
421 genomic_hit_ZN238_f1.sga ZN238|ZN238_f1 ZN238 -
422 genomic_hit_ZN333_f1.sga ZN333|ZN333_f1 ZN333 -
423 genomic_hit_ZN350_f1.sga ZN350|ZN350_f1 ZN350 -
424 genomic_hit_ZN384_f1.sga ZN384|ZN384_f1 ZN384 -
425 genomic_hit_ZN423_f1.sga ZN423|ZN423_f1 ZN423 -
426 genomic_hit_ZN589_f1.sga ZN589|ZN589_f1 ZN589 -

Notes on samples nomenclature:

The sample description is composed of the PWM ID as reported in the original collection together with the factor name.

Technical Notes

hg19 genome assembly was scanned with each log-odd PWM independently using PWMScan using a pvalue threshold of 0.0001 and background frequencies of 0.29,0.21,0.21,0.29 for A,C,G,T respectively. Motif instance coordinates were then converted to sga format by considering the middle position of each hit as the motif coordinate.

References

Last update: 13 June 2017