Barski 2007, CD4+ cells, histone marks. LiftOver from hg18.

Description

ChIP-seq against 20 histone lysine and arginine methylations, one histone variant (H2A.Z), RNA polymerase II (Pol II) and the insulator binding protein CTCF in human CD4+ T cells. Chromatin digested with micrococcal nuclease (MNase).
This dataset was lifted over from hg18.

Source

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 CTCF.sga CD4+ CTCF CTCF -
2 H2AZ.sga CD4+ H2AZ H2AZ -
3 H2BK5me1.sga CD4+ H2BK5me1 H2BK5me1 -
4 H3K27me1.sga CD4+ H3K27me1 H3K27me1 -
5 H3K27me2.sga CD4+ H3K27me2 H3K27me2 -
6 H3K27me3.sga CD4+ H3K27me3 H3K27me3 -
7 H3K36me1.sga CD4+ H3K36me1 H3K36me1 -
8 H3K36me3.sga CD4+ H3K36me3 H3K36me3 -
9 H3K4me1.sga CD4+ H3K4me1 H3K4me1 -
10 H3K4me2.sga CD4+ H3K4me2 H3K4me2 -
11 H3K4me3.sga CD4+ H3K4me3 H3K4me3 -
12 H3K79me1.sga CD4+ H3K79me1 H3K79me1 -
13 H3K79me2.sga CD4+ H3K79me2 H3K79me2 -
14 H3K79me3.sga CD4+ H3K79me3 H3K79me3 -
15 H3K9me1.sga CD4+ H3K9me1 H3K9me1 -
16 H3K9me2.sga CD4+ H3K9me2 H3K9me2 -
17 H3K9me3.sga CD4+ H3K9me3 H3K9me3 -
18 H3R2me1.sga CD4+ H3R2me1 H3R2me1 -
19 H3R2me2.sga CD4+ H3R2me2 H3R2me2 -
20 H4K20me1.sga CD4+ H4K20me1 H4K20me1 -
21 H4K20me3.sga CD4+ H4K20me3 H4K20me3 -
22 H4R3me2.sga CD4+ H4R3me2 H4R3me2 -
23 PolII.sga CD4+ PolII PolII -

Merged samples:

All samples have been merged except CTCF and PolII to generate the all_histones sample.

Technical Notes

Samples lifted-over from hg18.

References

Last update: 26 Sep 2017