Beguelin13, EZH2 maps in Large B-Cell Lymphoma cell lines.

Description

EZH2 and H3K27me3 ChIP sequencing of human Large B-Cell Lymphoma (DLBCL) cell lines.

Source

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1129348.sga NB|H3K4me3||rep1 H3K4me3 GSM1129348
2 GSM1129350.sga NB|H3K4me3||rep2 H3K4me3 GSM1129350
3 GSM1129356.sga NB|H3K27me3|| H3K27me3 GSM1129356
4 GSM1129349.sga NB|Input||rep1 Input GSM1129349
5 GSM1129351.sga NB|Input||rep2 Input GSM1129351
6 GSM1129352.sga GCB|H3K4me3||rep1 H3K4me3 GSM1129352
7 GSM1129354.sga GCB|H3K4me3||rep2 H3K4me3 GSM1129354
8 GSM1129357.sga GCB|H3K27me3|| H3K27me3 GSM1129357
9 GSM1129353.sga GCB|Input||rep1 Input GSM1129353
10 GSM1129355.sga GCB|Input||rep2 Input GSM1129355
11 GSM1129358.sga OCI-Ly7|EZH2|| EZH2 GSM1129358
12 GSM1129359.sga Farage|EZH2|| EZH2 GSM1129359
13 GSM1129360.sga SUDHL5|EZH2|| EZH2 GSM1129360
14 GSM1129361.sga OCI-Ly1|EZH2|| EZH2 GSM1129361
15 GSM1129362.sga SUDHL6|EZH2|| EZH2 GSM1129362
16 GSM1129363.sga WSUDLCL2|EZH2|| EZH2 GSM1129363
17 GSM1129364.sga Pfeiffer|EZH2|| EZH2 GSM1129364

Notes on samples nomenclature:

Cell lines used:

Technical Notes

FASTQ files were extracted from SRA files using fastq-dump (SRA toolkit v2.5.0) and mapped to the genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).

References

Last update: 8 Jan 2016