Boyle 2008, Open Chromatin by DNaseI HS from ENCODE/OpenChrom (Duke University)

Description

DNaseI hypersensitivity maps in several cell lines. These samples are part of the Tracks UCSC on open chromatin by DNaseI HS and FAIRE identified in multiple cell types by ChIP-seq.

Additional information on the cell lines can be found on the ENCODE Common Cell Types page at UCSC.

Source

Files downloaded from the UCSC Genome Browser via URL: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromDnase
Input file format: BAM

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly

Filename Description Feature GEO-ID
1 wgEncodeOpenChromDnase8988tAlnRep1.sga DNaseI HS - 8988T - Rep1 DNaseI-HS GSM816667
2 wgEncodeOpenChromDnase8988tAlnRep2.sga DNaseI HS - 8988T - Rep2 DNaseI-HS GSM816667
3 wgEncodeOpenChromDnaseA549AlnRep1.sga DNaseI HS - A549 - Rep1 DNaseI-HS GSM816649
4 wgEncodeOpenChromDnaseA549AlnRep2.sga DNaseI HS - A549 - Rep2 DNaseI-HS GSM816649
5 wgEncodeOpenChromDnaseAdultcd4th0AlnRep1.sga DNaseI HS - Adult_CD4_Th0 - Rep1 DNaseI-HS -
6 wgEncodeOpenChromDnaseAdultcd4th0AlnRep2.sga DNaseI HS - Adult_CD4_Th0 - Rep2 DNaseI-HS -
7 wgEncodeOpenChromDnaseAdultcd4th1AlnRep1.sga DNaseI HS - Adult_CD4_Th1 - Rep1 DNaseI-HS -
8 wgEncodeOpenChromDnaseAdultcd4th1AlnRep2.sga DNaseI HS - Adult_CD4_Th1 - Rep2 DNaseI-HS -
9 wgEncodeOpenChromDnaseAosmcSerumfreeAlnRep1.sga DNaseI HS - AoSMC - serum_free_media - Rep1 DNaseI-HS GSM816638
10 wgEncodeOpenChromDnaseAosmcSerumfreeAlnRep2.sga DNaseI HS - AoSMC - serum_free_media - Rep2 DNaseI-HS GSM816638
11 wgEncodeOpenChromDnaseCd20ro01794AlnRep1.sga DNaseI HS - CD20+_RO01794 - Rep1 DNaseI-HS -
12 wgEncodeOpenChromDnaseCd20ro01794AlnRep2.sga DNaseI HS - CD20+_RO01794 - Rep2 DNaseI-HS -
13 wgEncodeOpenChromDnaseCerebellumocAlnRep1.sga DNaseI HS - Cerebellum_OC - Rep1 DNaseI-HS -
14 wgEncodeOpenChromDnaseCerebellumocAlnRep2.sga DNaseI HS - Cerebellum_OC - Rep2 DNaseI-HS -
15 wgEncodeOpenChromDnaseCerebrumfrontalocAlnRep1.sga DNaseI HS - Cerebrum_frontal_OC - Rep1 DNaseI-HS -
16 wgEncodeOpenChromDnaseCerebrumfrontalocAlnRep2.sga DNaseI HS - Cerebrum_frontal_OC - Rep2 DNaseI-HS -
17 wgEncodeOpenChromDnaseChorionAlnRep1.sga DNaseI HS - Chorion - Rep1 DNaseI-HS GSM816628
18 wgEncodeOpenChromDnaseChorionAlnRep2.sga DNaseI HS - Chorion - Rep2 DNaseI-HS GSM816628
19 wgEncodeOpenChromDnaseCllAlnRep1.sga DNaseI HS - CLL - Rep1 DNaseI-HS GSM816664
20 wgEncodeOpenChromDnaseCllAlnRep2.sga DNaseI HS - CLL - Rep2 DNaseI-HS GSM816664
21 wgEncodeOpenChromDnaseCllAlnRep3.sga DNaseI HS - CLL - Rep3 DNaseI-HS GSM816664
22 wgEncodeOpenChromDnaseColo829AlnRep1.sga DNaseI HS - Colo829 - Rep1 DNaseI-HS -
23 wgEncodeOpenChromDnaseColo829AlnRep2.sga DNaseI HS - Colo829 - Rep2 DNaseI-HS -
24 wgEncodeOpenChromDnaseEcc1Dm002p1hAlnRep1.sga DNaseI HS - ECC-1 - DMSO_0.02pct - Rep1 DNaseI-HS -
25 wgEncodeOpenChromDnaseEcc1Dm002p1hAlnRep2.sga DNaseI HS - ECC-1 - DMSO_0.02pct - Rep2 DNaseI-HS -
26 wgEncodeOpenChromDnaseEcc1Est10nm30mAlnRep1.sga DNaseI HS - ECC-1 - Estradiol_10nM_30m - Rep1 DNaseI-HS -
27 wgEncodeOpenChromDnaseEcc1Est10nm30mAlnRep2.sga DNaseI HS - ECC-1 - Estradiol_10nM_30m - Rep2 DNaseI-HS -
28 wgEncodeOpenChromDnaseFibroblAlnRep1.sga DNaseI HS - Fibrobl - Rep1 DNaseI-HS GSM816652
29 wgEncodeOpenChromDnaseFibroblAlnRep2.sga DNaseI HS - Fibrobl - Rep2 DNaseI-HS GSM816652
30 wgEncodeOpenChromDnaseFibroblgm03348AlnRep1.sga DNaseI HS - Fibrobl_GM03348 - Rep1 DNaseI-HS -
31 wgEncodeOpenChromDnaseFibroblgm03348AlnRep2.sga DNaseI HS - Fibrobl_GM03348 - Rep2 DNaseI-HS -
32 wgEncodeOpenChromDnaseFibroblgm03348LenticonAlnRep1.sga DNaseI HS - Fibrobl_GM03348 - lenti-control - Rep1 DNaseI-HS -
33 wgEncodeOpenChromDnaseFibroblgm03348LenticonAlnRep2.sga DNaseI HS - Fibrobl_GM03348 - lenti-control - Rep2 DNaseI-HS -
34 wgEncodeOpenChromDnaseFibroblgm03348LentimyodAlnRep1.sga DNaseI HS - Fibrobl_GM03348 - lenti-MyoD - Rep1 DNaseI-HS -
35 wgEncodeOpenChromDnaseFibroblgm03348LentimyodAlnRep2.sga DNaseI HS - Fibrobl_GM03348 - lenti-MyoD - Rep2 DNaseI-HS -
36 wgEncodeOpenChromDnaseFibropAlnRep1.sga DNaseI HS - FibroP - Rep1 DNaseI-HS GSM816626
37 wgEncodeOpenChromDnaseFibropAlnRep2.sga DNaseI HS - FibroP - Rep2 DNaseI-HS GSM816626
38 wgEncodeOpenChromDnaseFibropAlnRep3.sga DNaseI HS - FibroP - Rep3 DNaseI-HS GSM816626
39 wgEncodeOpenChromDnaseFibropag08395AlnRep1.sga DNaseI HS - FibroP_AG08395 - Rep1 DNaseI-HS -
40 wgEncodeOpenChromDnaseFibropag08395AlnRep2.sga DNaseI HS - FibroP_AG08395 - Rep2 DNaseI-HS -
41 wgEncodeOpenChromDnaseFibropag08395AlnRep3.sga DNaseI HS - FibroP_AG08395 - Rep3 DNaseI-HS -
42 wgEncodeOpenChromDnaseFibropag08396AlnRep1.sga DNaseI HS - FibroP_AG08396 - Rep1 DNaseI-HS -
43 wgEncodeOpenChromDnaseFibropag08396AlnRep2.sga DNaseI HS - FibroP_AG08396 - Rep2 DNaseI-HS -
44 wgEncodeOpenChromDnaseFibropag08396AlnRep3.sga DNaseI HS - FibroP_AG08396 - Rep3 DNaseI-HS -
45 wgEncodeOpenChromDnaseFibropag20443AlnRep1.sga DNaseI HS - FibroP_AG20443 - Rep1 DNaseI-HS -
46 wgEncodeOpenChromDnaseFibropag20443AlnRep2.sga DNaseI HS - FibroP_AG20443 - Rep2 DNaseI-HS -
47 wgEncodeOpenChromDnaseFibropag20443AlnRep3.sga DNaseI HS - FibroP_AG20443 - Rep3 DNaseI-HS -
48 wgEncodeOpenChromDnaseFrontalcortexocAlnRep1.sga DNaseI HS - Frontal_cortex_OC - Rep1 DNaseI-HS -
49 wgEncodeOpenChromDnaseFrontalcortexocAlnRep2.sga DNaseI HS - Frontal_cortex_OC - Rep2 DNaseI-HS -
50 wgEncodeOpenChromDnaseGcbcellAlnRep1.sga DNaseI HS - GC_B_cell - Rep1 DNaseI-HS -
51 wgEncodeOpenChromDnaseGcbcellAlnRep2.sga DNaseI HS - GC_B_cell - Rep2 DNaseI-HS -
52 wgEncodeOpenChromDnaseGlioblaAlnRep1.sga DNaseI HS - Gliobla - Rep1 DNaseI-HS GSM816668
53 wgEncodeOpenChromDnaseGlioblaAlnRep2.sga DNaseI HS - Gliobla - Rep2 DNaseI-HS GSM816668
54 wgEncodeOpenChromDnaseGm10248AlnRep1.sga DNaseI HS - GM10248 - Rep1 DNaseI-HS -
55 wgEncodeOpenChromDnaseGm10248AlnRep2.sga DNaseI HS - GM10248 - Rep2 DNaseI-HS -
56 wgEncodeOpenChromDnaseGm10266AlnRep1.sga DNaseI HS - GM10266 - Rep1 DNaseI-HS -
57 wgEncodeOpenChromDnaseGm10266AlnRep2.sga DNaseI HS - GM10266 - Rep2 DNaseI-HS -
58 wgEncodeOpenChromDnaseGm12878AlnRep1.sga DNaseI HS - GM12878 - Rep1 DNaseI-HS GSM816665
59 wgEncodeOpenChromDnaseGm12878AlnRep2.sga DNaseI HS - GM12878 - Rep2 DNaseI-HS GSM816665
60 wgEncodeOpenChromDnaseGm12878AlnRep3.sga DNaseI HS - GM12878 - Rep3 DNaseI-HS GSM816665
61 wgEncodeOpenChromDnaseGm12878AlnRep4.sga DNaseI HS - GM12878 - Rep4 DNaseI-HS GSM816665
62 wgEncodeOpenChromDnaseGm12878AlnRep5.sga DNaseI HS - GM12878 - Rep5 DNaseI-HS GSM816665
63 wgEncodeOpenChromDnaseGm12891AlnRep1.sga DNaseI HS - GM12891 - Rep1 DNaseI-HS GSM816656
64 wgEncodeOpenChromDnaseGm12891AlnRep2.sga DNaseI HS - GM12891 - Rep2 DNaseI-HS GSM816656
65 wgEncodeOpenChromDnaseGm12892AlnRep1.sga DNaseI HS - GM12892 - Rep1 DNaseI-HS GSM816657
66 wgEncodeOpenChromDnaseGm12892AlnRep2.sga DNaseI HS - GM12892 - Rep2 DNaseI-HS GSM816657
67 wgEncodeOpenChromDnaseGm13976AlnRep1.sga DNaseI HS - GM13976 - Rep1 DNaseI-HS -
68 wgEncodeOpenChromDnaseGm13976AlnRep2.sga DNaseI HS - GM13976 - Rep2 DNaseI-HS -
69 wgEncodeOpenChromDnaseGm13977AlnRep1.sga DNaseI HS - GM13977 - Rep1 DNaseI-HS -
70 wgEncodeOpenChromDnaseGm13977AlnRep2.sga DNaseI HS - GM13977 - Rep2 DNaseI-HS -
71 wgEncodeOpenChromDnaseGm18507AlnRep1.sga DNaseI HS - GM18507 - Rep1 DNaseI-HS GSM816653
72 wgEncodeOpenChromDnaseGm18507AlnRep2.sga DNaseI HS - GM18507 - Rep2 DNaseI-HS GSM816653
73 wgEncodeOpenChromDnaseGm18507AlnRep3.sga DNaseI HS - GM18507 - Rep3 DNaseI-HS GSM816653
74 wgEncodeOpenChromDnaseGm19238AlnRep1.sga DNaseI HS - GM19238 - Rep1 DNaseI-HS GSM816658
75 wgEncodeOpenChromDnaseGm19238AlnRep2.sga DNaseI HS - GM19238 - Rep2 DNaseI-HS GSM816658
76 wgEncodeOpenChromDnaseGm19239AlnRep1.sga DNaseI HS - GM19239 - Rep1 DNaseI-HS GSM816659
77 wgEncodeOpenChromDnaseGm19239AlnRep2.sga DNaseI HS - GM19239 - Rep2 DNaseI-HS GSM816659
78 wgEncodeOpenChromDnaseGm19240AlnRep1.sga DNaseI HS - GM19240 - Rep1 DNaseI-HS GSM816648
79 wgEncodeOpenChromDnaseGm19240AlnRep2.sga DNaseI HS - GM19240 - Rep2 DNaseI-HS GSM816648
80 wgEncodeOpenChromDnaseGm20000AlnRep1.sga DNaseI HS - GM20000 - Rep1 DNaseI-HS -
81 wgEncodeOpenChromDnaseGm20000AlnRep2.sga DNaseI HS - GM20000 - Rep2 DNaseI-HS -
82 wgEncodeOpenChromDnaseH1hescAlnRep1.sga DNaseI HS - H1-hESC - Rep1 DNaseI-HS GSM816632
83 wgEncodeOpenChromDnaseH1hescAlnRep2.sga DNaseI HS - H1-hESC - Rep2 DNaseI-HS GSM816632
84 wgEncodeOpenChromDnaseH7esAlnRep1.sga DNaseI HS - H7-hESC - Rep1 DNaseI-HS -
85 wgEncodeOpenChromDnaseH7esAlnRep2.sga DNaseI HS - H7-hESC - Rep2 DNaseI-HS -
86 wgEncodeOpenChromDnaseH7esAlnRep3.sga DNaseI HS - H7-hESC - Rep3 DNaseI-HS -
87 wgEncodeOpenChromDnaseH9esAlnRep1.sga DNaseI HS - H9ES - Rep1 DNaseI-HS GSM816629
88 wgEncodeOpenChromDnaseH9esAlnRep2.sga DNaseI HS - H9ES - Rep2 DNaseI-HS GSM816629
89 wgEncodeOpenChromDnaseHeartocAlnRep1.sga DNaseI HS - Heart_OC - Rep1 DNaseI-HS -
90 wgEncodeOpenChromDnaseHeartocAlnRep2.sga DNaseI HS - Heart_OC - Rep2 DNaseI-HS -
91 wgEncodeOpenChromDnaseHek293tAlnRep1.sga DNaseI HS - HEK293T - Rep1 DNaseI-HS -
92 wgEncodeOpenChromDnaseHek293tAlnRep2.sga DNaseI HS - HEK293T - Rep2 DNaseI-HS -
93 wgEncodeOpenChromDnaseHelas3AlnRep1.sga DNaseI HS - HeLa-S3 - Rep1 DNaseI-HS GSM816643
94 wgEncodeOpenChromDnaseHelas3AlnRep2.sga DNaseI HS - HeLa-S3 - Rep2 DNaseI-HS GSM816643
95 wgEncodeOpenChromDnaseHelas3AlnRep3.sga DNaseI HS - HeLa-S3 - Rep3 DNaseI-HS GSM816643
96 wgEncodeOpenChromDnaseHelas3Ifna4hAlnRep1.sga DNaseI HS - HeLa-S3 - IFNa4h - Rep1 DNaseI-HS GSM816633
97 wgEncodeOpenChromDnaseHelas3Ifna4hAlnRep2.sga DNaseI HS - HeLa-S3 - IFNa4h - Rep2 DNaseI-HS GSM816633
98 wgEncodeOpenChromDnaseHepatocytesAlnRep1.sga DNaseI HS - Hepatocytes - Rep1 DNaseI-HS GSM816663
99 wgEncodeOpenChromDnaseHepatocytesAlnRep2.sga DNaseI HS - Hepatocytes - Rep2 DNaseI-HS GSM816663
100 wgEncodeOpenChromDnaseHepg2AlnRep1.sga DNaseI HS - HepG2 - Rep1 DNaseI-HS GSM816662
101 wgEncodeOpenChromDnaseHepg2AlnRep2.sga DNaseI HS - HepG2 - Rep2 DNaseI-HS GSM816662
102 wgEncodeOpenChromDnaseHepg2AlnRep3.sga DNaseI HS - HepG2 - Rep3 DNaseI-HS GSM816662
103 wgEncodeOpenChromDnaseHmecAlnRep1.sga DNaseI HS - HMEC - Rep1 DNaseI-HS GSM816669
104 wgEncodeOpenChromDnaseHmecAlnRep2.sga DNaseI HS - HMEC - Rep2 DNaseI-HS GSM816669
105 wgEncodeOpenChromDnaseHpde6e6e7AlnRep1.sga DNaseI HS - HPDE6-E6E7 - Rep1 DNaseI-HS GSM816639
106 wgEncodeOpenChromDnaseHpde6e6e7AlnRep2.sga DNaseI HS - HPDE6-E6E7 - Rep2 DNaseI-HS GSM816639
107 wgEncodeOpenChromDnaseHsmmAlnRep1.sga DNaseI HS - HSMM - Rep1 DNaseI-HS GSM816650
108 wgEncodeOpenChromDnaseHsmmAlnRep2.sga DNaseI HS - HSMM - Rep2 DNaseI-HS GSM816650
109 wgEncodeOpenChromDnaseHsmmAlnRep3.sga DNaseI HS - HSMM - Rep3 DNaseI-HS GSM816650
110 wgEncodeOpenChromDnaseHsmmembAlnRep1.sga DNaseI HS - HSMM_emb - Rep1 DNaseI-HS -
111 wgEncodeOpenChromDnaseHsmmembAlnRep2.sga DNaseI HS - HSMM_emb - Rep2 DNaseI-HS -
112 wgEncodeOpenChromDnaseHsmmfshdAlnRep1.sga DNaseI HS - HSMM_FSHD - Rep1 DNaseI-HS -
113 wgEncodeOpenChromDnaseHsmmfshdAlnRep2.sga DNaseI HS - HSMM_FSHD - Rep2 DNaseI-HS -
114 wgEncodeOpenChromDnaseHsmmfshdAlnRep3.sga DNaseI HS - HSMM_FSHD - Rep3 DNaseI-HS -
115 wgEncodeOpenChromDnaseHsmmtAlnRep1.sga DNaseI HS - HSMMtube - Rep1 DNaseI-HS GSM816651
116 wgEncodeOpenChromDnaseHsmmtAlnRep2.sga DNaseI HS - HSMMtube - Rep2 DNaseI-HS GSM816651
117 wgEncodeOpenChromDnaseHsmmtAlnRep3.sga DNaseI HS - HSMMtube - Rep3 DNaseI-HS GSM816651
118 wgEncodeOpenChromDnaseHtr8AlnRep1.sga DNaseI HS - HTR8svn - Rep1 DNaseI-HS GSM816644
119 wgEncodeOpenChromDnaseHtr8AlnRep2.sga DNaseI HS - HTR8svn - Rep2 DNaseI-HS GSM816644
120 wgEncodeOpenChromDnaseHuh75AlnRep1.sga DNaseI HS - Huh-7.5 - Rep1 DNaseI-HS GSM816671
121 wgEncodeOpenChromDnaseHuh75AlnRep2.sga DNaseI HS - Huh-7.5 - Rep2 DNaseI-HS GSM816671
122 wgEncodeOpenChromDnaseHuh7AlnRep1.sga DNaseI HS - Huh-7 - Rep1 DNaseI-HS GSM816641
123 wgEncodeOpenChromDnaseHuh7AlnRep2.sga DNaseI HS - Huh-7 - Rep2 DNaseI-HS GSM816641
124 wgEncodeOpenChromDnaseHuvecAlnRep1.sga DNaseI HS - HUVEC - Rep1 DNaseI-HS GSM816646
125 wgEncodeOpenChromDnaseHuvecAlnRep2.sga DNaseI HS - HUVEC - Rep2 DNaseI-HS GSM816646
126 wgEncodeOpenChromDnaseImr90AlnRep1.sga DNaseI HS - IMR90 - Rep1 DNaseI-HS -
127 wgEncodeOpenChromDnaseImr90AlnRep2.sga DNaseI HS - IMR90 - Rep2 DNaseI-HS -
128 wgEncodeOpenChromDnaseIpsAlnRep1.sga DNaseI HS - iPS - Rep1 DNaseI-HS GSM816642
129 wgEncodeOpenChromDnaseIpsAlnRep2.sga DNaseI HS - iPS - Rep2 DNaseI-HS GSM816642
130 wgEncodeOpenChromDnaseIpsAlnRep3.sga DNaseI HS - iPS - Rep3 DNaseI-HS GSM816642
131 wgEncodeOpenChromDnaseIpscwru1AlnRep1.sga DNaseI HS - iPS_CWRU1 - Rep1 DNaseI-HS -
132 wgEncodeOpenChromDnaseIpscwru1AlnRep2.sga DNaseI HS - iPS_CWRU1 - Rep2 DNaseI-HS -
133 wgEncodeOpenChromDnaseIpsnihi11AlnRep1.sga DNaseI HS - iPS_NIHi11 - Rep1 DNaseI-HS -
134 wgEncodeOpenChromDnaseIpsnihi11AlnRep2.sga DNaseI HS - iPS_NIHi11 - Rep2 DNaseI-HS -
135 wgEncodeOpenChromDnaseIpsnihi11AlnRep3.sga DNaseI HS - iPS_NIHi11 - Rep3 DNaseI-HS -
136 wgEncodeOpenChromDnaseIpsnihi7AlnRep1.sga DNaseI HS - iPS_NIHi7 - Rep1 DNaseI-HS -
137 wgEncodeOpenChromDnaseIpsnihi7AlnRep2.sga DNaseI HS - iPS_NIHi7 - Rep2 DNaseI-HS -
138 wgEncodeOpenChromDnaseIpsnihi7AlnRep3.sga DNaseI HS - iPS_NIHi7 - Rep3 DNaseI-HS -
139 wgEncodeOpenChromDnaseIshikawaEst10nm30mAlnRep1.sga DNaseI HS - Ishikawa - Estradiol_10nM_30m - Rep1 DNaseI-HS -
140 wgEncodeOpenChromDnaseIshikawaEst10nm30mAlnRep2.sga DNaseI HS - Ishikawa - Estradiol_10nM_30m - Rep2 DNaseI-HS -
141 wgEncodeOpenChromDnaseIshikawaTam10030AlnRep1.sga DNaseI HS - Ishikawa - 4OHTAM_100nM_30m - Rep1 DNaseI-HS -
142 wgEncodeOpenChromDnaseIshikawaTam10030AlnRep2.sga DNaseI HS - Ishikawa - 4OHTAM_100nM_30m - Rep2 DNaseI-HS -
143 wgEncodeOpenChromDnaseK562AlnRep1.sga DNaseI HS - K562 - Rep1 DNaseI-HS GSM816655
144 wgEncodeOpenChromDnaseK562AlnRep1V2.sga DNaseI HS - K562 - Rep1 DNaseI-HS -
145 wgEncodeOpenChromDnaseK562AlnRep2.sga DNaseI HS - K562 - Rep2 DNaseI-HS GSM816655
146 wgEncodeOpenChromDnaseK562AlnRep2V2.sga DNaseI HS - K562 - Rep2 DNaseI-HS -
147 wgEncodeOpenChromDnaseK562AlnRep3V2.sga DNaseI HS - K562 - Rep3 DNaseI-HS -
148 wgEncodeOpenChromDnaseK562G1phaseAlnRep1.sga DNaseI HS - K562 - G1_phase - Rep1 DNaseI-HS -
149 wgEncodeOpenChromDnaseK562G1phaseAlnRep2.sga DNaseI HS - K562 - G1_phase - Rep2 DNaseI-HS -
150 wgEncodeOpenChromDnaseK562G1phaseAlnRep3.sga DNaseI HS - K562 - G1_phase - Rep3 DNaseI-HS -
151 wgEncodeOpenChromDnaseK562G2mphaseAlnRep1.sga DNaseI HS - K562 - G2-M_phase - Rep1 DNaseI-HS -
152 wgEncodeOpenChromDnaseK562G2mphaseAlnRep2.sga DNaseI HS - K562 - G2-M_phase - Rep2 DNaseI-HS -
153 wgEncodeOpenChromDnaseK562G2mphaseAlnRep3.sga DNaseI HS - K562 - G2-M_phase - Rep3 DNaseI-HS -
154 wgEncodeOpenChromDnaseK562NabutAlnRep1.sga DNaseI HS - K562 - NaBut - Rep1 DNaseI-HS -
155 wgEncodeOpenChromDnaseK562NabutAlnRep2.sga DNaseI HS - K562 - NaBut - Rep2 DNaseI-HS -
156 wgEncodeOpenChromDnaseK562Saha1u72hrAlnRep1.sga DNaseI HS - K562 - SAHA_1uM_72hr - Rep1 DNaseI-HS -
157 wgEncodeOpenChromDnaseK562Saha1u72hrAlnRep2.sga DNaseI HS - K562 - SAHA_1uM_72hr - Rep2 DNaseI-HS -
158 wgEncodeOpenChromDnaseK562Saha1u72hrAlnRep3.sga DNaseI HS - K562 - SAHA_1uM_72hr - Rep3 DNaseI-HS -
159 wgEncodeOpenChromDnaseK562SahactrlAlnRep1.sga DNaseI HS - K562 - SAHA_ctrl - Rep1 DNaseI-HS -
160 wgEncodeOpenChromDnaseK562SahactrlAlnRep2.sga DNaseI HS - K562 - SAHA_ctrl - Rep2 DNaseI-HS -
161 wgEncodeOpenChromDnaseK562SahactrlAlnRep3.sga DNaseI HS - K562 - SAHA_ctrl - Rep3 DNaseI-HS -
162 wgEncodeOpenChromDnaseLncapAlnRep1.sga DNaseI HS - LNCaP - Rep1 DNaseI-HS GSM816637
163 wgEncodeOpenChromDnaseLncapAlnRep2.sga DNaseI HS - LNCaP - Rep2 DNaseI-HS GSM816637
164 wgEncodeOpenChromDnaseLncapAlnRep3.sga DNaseI HS - LNCaP - Rep3 DNaseI-HS GSM816637
165 wgEncodeOpenChromDnaseLncapAndroAlnRep1.sga DNaseI HS - LNCaP - androgen - Rep1 DNaseI-HS GSM816634
166 wgEncodeOpenChromDnaseLncapAndroAlnRep2.sga DNaseI HS - LNCaP - androgen - Rep2 DNaseI-HS GSM816634
167 wgEncodeOpenChromDnaseMcf7AlnRep1.sga DNaseI HS - MCF-7 - Rep1 DNaseI-HS GSM816627
168 wgEncodeOpenChromDnaseMcf7AlnRep2.sga DNaseI HS - MCF-7 - Rep2 DNaseI-HS GSM816627
169 wgEncodeOpenChromDnaseMcf7CtcfshrnaAlnRep1.sga DNaseI HS - MCF-7 - CTCF_shRNA_knockdown - Rep1 DNaseI-HS -
170 wgEncodeOpenChromDnaseMcf7CtcfshrnaAlnRep2.sga DNaseI HS - MCF-7 - CTCF_shRNA_knockdown - Rep2 DNaseI-HS -
171 wgEncodeOpenChromDnaseMcf7CtcfshrnaAlnRep3.sga DNaseI HS - MCF-7 - CTCF_shRNA_knockdown - Rep3 DNaseI-HS -
172 wgEncodeOpenChromDnaseMcf7HypoxlacAlnRep1.sga DNaseI HS - MCF-7 - Hypoxia_LacAcid - Rep1 DNaseI-HS GSM816670
173 wgEncodeOpenChromDnaseMcf7HypoxlacAlnRep2.sga DNaseI HS - MCF-7 - Hypoxia_LacAcid - Rep2 DNaseI-HS GSM816670
174 wgEncodeOpenChromDnaseMcf7HypoxlacconAlnRep1.sga DNaseI HS - MCF-7 - Hypoxia_LacAcid_ctrl - Rep1 DNaseI-HS -
175 wgEncodeOpenChromDnaseMcf7HypoxlacconAlnRep2.sga DNaseI HS - MCF-7 - Hypoxia_LacAcid_ctrl - Rep2 DNaseI-HS -
176 wgEncodeOpenChromDnaseMcf7RandshrnaAlnRep1.sga DNaseI HS - MCF-7 - Randomized_shRNA_control - Rep1 DNaseI-HS -
177 wgEncodeOpenChromDnaseMcf7RandshrnaAlnRep2.sga DNaseI HS - MCF-7 - Randomized_shRNA_control - Rep2 DNaseI-HS -
178 wgEncodeOpenChromDnaseMcf7RandshrnaAlnRep3.sga DNaseI HS - MCF-7 - Randomized_shRNA_control - Rep3 DNaseI-HS -
179 wgEncodeOpenChromDnaseMedulloAlnRep1.sga DNaseI HS - Medullo - Rep1 DNaseI-HS GSM816636
180 wgEncodeOpenChromDnaseMedulloAlnRep2.sga DNaseI HS - Medullo - Rep2 DNaseI-HS GSM816636
181 wgEncodeOpenChromDnaseMedullod341AlnRep1.sga DNaseI HS - Medullo_D341 - Rep1 DNaseI-HS -
182 wgEncodeOpenChromDnaseMedullod341AlnRep2.sga DNaseI HS - Medullo_D341 - Rep2 DNaseI-HS -
183 wgEncodeOpenChromDnaseMel2183AlnRep1.sga DNaseI HS - Mel_2183 - Rep1 DNaseI-HS -
184 wgEncodeOpenChromDnaseMel2183AlnRep2.sga DNaseI HS - Mel_2183 - Rep2 DNaseI-HS -
185 wgEncodeOpenChromDnaseMelanoAlnRep1.sga DNaseI HS - Melano - Rep1 DNaseI-HS GSM816631
186 wgEncodeOpenChromDnaseMelanoAlnRep2.sga DNaseI HS - Melano - Rep2 DNaseI-HS GSM816631
187 wgEncodeOpenChromDnaseMonocd14AlnRep1.sga DNaseI HS - Monocytes-CD14+ - Rep1 DNaseI-HS -
188 wgEncodeOpenChromDnaseMonocd14AlnRep2.sga DNaseI HS - Monocytes-CD14+ - Rep2 DNaseI-HS -
189 wgEncodeOpenChromDnaseMyometrAlnRep1.sga DNaseI HS - Myometr - Rep1 DNaseI-HS GSM816630
190 wgEncodeOpenChromDnaseMyometrAlnRep2.sga DNaseI HS - Myometr - Rep2 DNaseI-HS GSM816630
191 wgEncodeOpenChromDnaseNaivebcellAlnRep1.sga DNaseI HS - Naive_B_cell - Rep1 DNaseI-HS -
192 wgEncodeOpenChromDnaseNaivebcellAlnRep2.sga DNaseI HS - Naive_B_cell - Rep2 DNaseI-HS -
193 wgEncodeOpenChromDnaseNhekAlnRep1.sga DNaseI HS - NHEK - Rep1 DNaseI-HS GSM816635
194 wgEncodeOpenChromDnaseNhekAlnRep2.sga DNaseI HS - NHEK - Rep2 DNaseI-HS GSM816635
195 wgEncodeOpenChromDnaseOlfneurosphereAlnRep1.sga DNaseI HS - Olf_neurosphere - Rep1 DNaseI-HS -
196 wgEncodeOpenChromDnaseOlfneurosphereAlnRep2.sga DNaseI HS - Olf_neurosphere - Rep2 DNaseI-HS -
197 wgEncodeOpenChromDnaseOlfneurosphereAlnRep3.sga DNaseI HS - Olf_neurosphere - Rep3 DNaseI-HS -
198 wgEncodeOpenChromDnaseOsteoblAlnRep1.sga DNaseI HS - Osteobl - Rep1 DNaseI-HS GSM816654
199 wgEncodeOpenChromDnaseOsteoblAlnRep2.sga DNaseI HS - Osteobl - Rep2 DNaseI-HS GSM816654
200 wgEncodeOpenChromDnaseOsteoblAlnRep3.sga DNaseI HS - Osteobl - Rep3 DNaseI-HS GSM816654
201 wgEncodeOpenChromDnasePanisdAlnRep1.sga DNaseI HS - PanIsletD - Rep1 DNaseI-HS GSM816666
202 wgEncodeOpenChromDnasePanisdAlnRep2.sga DNaseI HS - PanIsletD - Rep2 DNaseI-HS GSM816666
203 wgEncodeOpenChromDnasePanisdAlnRep3.sga DNaseI HS - PanIsletD - Rep3 DNaseI-HS GSM816666
204 wgEncodeOpenChromDnasePanisletsAlnRep1.sga DNaseI HS - PanIslets - Rep1 DNaseI-HS GSM816660
205 wgEncodeOpenChromDnasePanisletsAlnRep2.sga DNaseI HS - PanIslets - Rep2 DNaseI-HS GSM816660
206 wgEncodeOpenChromDnasePanisletsAlnRep3.sga DNaseI HS - PanIslets - Rep3 DNaseI-HS GSM816660
207 wgEncodeOpenChromDnasePhteAlnRep1.sga DNaseI HS - pHTE - Rep1 DNaseI-HS GSM816647
208 wgEncodeOpenChromDnasePhteAlnRep2.sga DNaseI HS - pHTE - Rep2 DNaseI-HS GSM816647
209 wgEncodeOpenChromDnaseProgfibAlnRep1.sga DNaseI HS - ProgFib - Rep1 DNaseI-HS GSM816661
210 wgEncodeOpenChromDnaseProgfibAlnRep2.sga DNaseI HS - ProgFib - Rep2 DNaseI-HS GSM816661
211 wgEncodeOpenChromDnasePsoasmuscleocAlnRep1.sga DNaseI HS - Psoas_muscle_OC - Rep1 DNaseI-HS -
212 wgEncodeOpenChromDnasePsoasmuscleocAlnRep2.sga DNaseI HS - Psoas_muscle_OC - Rep2 DNaseI-HS -
213 wgEncodeOpenChromDnaseRwpe1AlnRep1.sga DNaseI HS - RWPE1 - Rep1 DNaseI-HS -
214 wgEncodeOpenChromDnaseRwpe1AlnRep2.sga DNaseI HS - RWPE1 - Rep2 DNaseI-HS -
215 wgEncodeOpenChromDnaseSknshAlnRep1.sga DNaseI HS - SK-N-SH - Rep1 DNaseI-HS -
216 wgEncodeOpenChromDnaseSknshAlnRep2.sga DNaseI HS - SK-N-SH - Rep2 DNaseI-HS -
217 wgEncodeOpenChromDnaseStellateAlnRep1.sga DNaseI HS - Stellate - Rep1 DNaseI-HS GSM816672
218 wgEncodeOpenChromDnaseStellateAlnRep2.sga DNaseI HS - Stellate - Rep2 DNaseI-HS GSM816672
219 wgEncodeOpenChromDnaseT47dAlnRep1.sga DNaseI HS - T-47D - Rep1 DNaseI-HS GSM816673
220 wgEncodeOpenChromDnaseT47dAlnRep2.sga DNaseI HS - T-47D - Rep2 DNaseI-HS GSM816673
221 wgEncodeOpenChromDnaseT47dEst10nm30mAlnRep1.sga DNaseI HS - T-47D - Estradiol_10nM_30m - Rep1 DNaseI-HS -
222 wgEncodeOpenChromDnaseT47dEst10nm30mAlnRep2.sga DNaseI HS - T-47D - Estradiol_10nM_30m - Rep2 DNaseI-HS -
223 wgEncodeOpenChromDnaseUrothelAlnRep1V2.sga DNaseI HS - Urothelia - Rep1 DNaseI-HS -
224 wgEncodeOpenChromDnaseUrothelAlnRep2V2.sga DNaseI HS - Urothelia - Rep2 DNaseI-HS -
225 wgEncodeOpenChromDnaseUrothelUt189AlnRep1V2.sga DNaseI HS - Urothelia - UT189 - Rep1 DNaseI-HS -
226 wgEncodeOpenChromDnaseUrothelUt189AlnRep2V2.sga DNaseI HS - Urothelia - UT189 - Rep2 DNaseI-HS -
227 wgEncodeOpenChromDnaseUrotsaAlnRep1.sga DNaseI HS - Urothelia - Rep1 DNaseI-HS -
228 wgEncodeOpenChromDnaseUrotsaAlnRep2.sga DNaseI HS - Urothelia - Rep2 DNaseI-HS -
229 wgEncodeOpenChromDnaseUrotsaUt189AlnRep1.sga DNaseI HS - Urothelia - UT189 - Rep1 DNaseI-HS -
230 wgEncodeOpenChromDnaseUrotsaUt189AlnRep2.sga DNaseI HS - Urothelia - UT189 - Rep2 DNaseI-HS -

Technical Notes

BAM files were downloaded from UCSC and converted in sga format using bamToBed (SamTools) and bed2sga (ChIP-seq).

References

  1. Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE.
    High-resolution mapping and characterization of open chromatin across the genome.
    Cell. 2008 Jan 25;132(2):311-22.
    PMID: 18243105

  2. GEO series GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University).