GSE33213, Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)

Description:

This samples serie was produced as part of the four Open Chromatin track sets present in ENCODE and UCSC genome browser. These samples represent several Transcription Factor binding sites in different cell lines and different conditions. Additional peak files are also provided.

Source

Files downloaded from the UCSC Genome Browser via URL: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeOpenChromChip
Input file format: BAM and narrowPeak

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly

Filename Description Feature GEO-ID
1 wgEncodeOpenChromChipA549CtcfAlnRep1.sga A549 - CTCF - None - Rep1 CTCF GSM822289
2 wgEncodeOpenChromChipA549CtcfAlnRep2.sga A549 - CTCF - None - Rep2 CTCF GSM822289
3 wgEncodeOpenChromChipA549InputAln.sga A549 - Input Input GSM822307
4 wgEncodeOpenChromChipA549Pol2AlnRep1.sga A549 - Pol2 - None - Rep1 Pol2 GSM822288
5 wgEncodeOpenChromChipA549Pol2AlnRep2.sga A549 - Pol2 - None - Rep2 Pol2 GSM822288
6 wgEncodeOpenChromChipColonocInputAln.sga Colon_OC - Input Input -
7 wgEncodeOpenChromChipFibroblCtcfAlnRep1.sga Fibrobl - CTCF - None - Rep1 CTCF GSM822281
8 wgEncodeOpenChromChipFibroblCtcfAlnRep2.sga Fibrobl - CTCF - None - Rep2 CTCF GSM822281
9 wgEncodeOpenChromChipFibroblInputAln.sga Fibrobl - Input Input GSM822267
10 wgEncodeOpenChromChipGm10248CtcfAlnRep1.sga GM10248 - CTCF - None - Rep1 CTCF -
11 wgEncodeOpenChromChipGm10248CtcfAlnRep2.sga GM10248 - CTCF - None - Rep2 CTCF -
12 wgEncodeOpenChromChipGm10248InputAln.sga GM10248 - Input Input -
13 wgEncodeOpenChromChipGm10266CtcfAlnRep1.sga GM10266 - CTCF - None - Rep1 CTCF -
14 wgEncodeOpenChromChipGm10266CtcfAlnRep2.sga GM10266 - CTCF - None - Rep2 CTCF -
15 wgEncodeOpenChromChipGm10266InputAln.sga GM10266 - Input Input -
16 wgEncodeOpenChromChipGm12878CmycAlnRep1.sga GM12878 - c-Myc - None - Rep1 c-Myc GSM822290
17 wgEncodeOpenChromChipGm12878CmycAlnRep2.sga GM12878 - c-Myc - None - Rep2 c-Myc GSM822290
18 wgEncodeOpenChromChipGm12878CtcfAlnRep1.sga GM12878 - CTCF - None - Rep1 CTCF GSM822312
19 wgEncodeOpenChromChipGm12878CtcfAlnRep2.sga GM12878 - CTCF - None - Rep2 CTCF GSM822312
20 wgEncodeOpenChromChipGm12878CtcfAlnRep3.sga GM12878 - CTCF - None - Rep3 CTCF GSM822312
21 wgEncodeOpenChromChipGm12878InputAln.sga GM12878 - Input Input GSM822292
22 wgEncodeOpenChromChipGm12878Pol2AlnRep1.sga GM12878 - Pol2 - None - Rep1 Pol2 GSM822270
23 wgEncodeOpenChromChipGm12878Pol2AlnRep2.sga GM12878 - Pol2 - None - Rep2 Pol2 GSM822270
24 wgEncodeOpenChromChipGm12891CtcfAlnRep1.sga GM12891 - CTCF - None - Rep1 CTCF GSM822294
25 wgEncodeOpenChromChipGm12891CtcfAlnRep2.sga GM12891 - CTCF - None - Rep2 CTCF GSM822294
26 wgEncodeOpenChromChipGm12892CtcfAlnRep1.sga GM12892 - CTCF - None - Rep1 CTCF GSM822299
27 wgEncodeOpenChromChipGm12892CtcfAlnRep2.sga GM12892 - CTCF - None - Rep2 CTCF GSM822299
28 wgEncodeOpenChromChipGm13976CtcfAlnRep1.sga GM13976 - CTCF - None - Rep1 CTCF -
29 wgEncodeOpenChromChipGm13976CtcfAlnRep2.sga GM13976 - CTCF - None - Rep2 CTCF -
30 wgEncodeOpenChromChipGm13976InputAln.sga GM13976 - Input Input -
31 wgEncodeOpenChromChipGm13977CtcfAlnRep1.sga GM13977 - CTCF - None - Rep1 CTCF -
32 wgEncodeOpenChromChipGm13977CtcfAlnRep2.sga GM13977 - CTCF - None - Rep2 CTCF -
33 wgEncodeOpenChromChipGm13977InputAln.sga GM13977 - Input Input -
34 wgEncodeOpenChromChipGm19238CtcfAlnRep1.sga GM19238 - CTCF - None - Rep1 CTCF GSM822278
35 wgEncodeOpenChromChipGm19238CtcfAlnRep2.sga GM19238 - CTCF - None - Rep2 CTCF GSM822278
36 wgEncodeOpenChromChipGm19239CtcfAlnRep1.sga GM19239 - CTCF - None - Rep1 CTCF GSM822277
37 wgEncodeOpenChromChipGm19239CtcfAlnRep2.sga GM19239 - CTCF - None - Rep2 CTCF GSM822277
38 wgEncodeOpenChromChipGm19240CtcfAlnRep1.sga GM19240 - CTCF - None - Rep1 CTCF GSM822276
39 wgEncodeOpenChromChipGm19240CtcfAlnRep2.sga GM19240 - CTCF - None - Rep2 CTCF GSM822276
40 wgEncodeOpenChromChipGm20000CtcfAlnRep1.sga GM20000 - CTCF - None - Rep1 CTCF -
41 wgEncodeOpenChromChipGm20000CtcfAlnRep2.sga GM20000 - CTCF - None - Rep2 CTCF -
42 wgEncodeOpenChromChipGm20000InputAln.sga GM20000 - Input Input -
43 wgEncodeOpenChromChipGlioblaCtcfAlnRep1.sga Gliobla - CTCF - None - Rep1 CTCF GSM822303
44 wgEncodeOpenChromChipGlioblaCtcfAlnRep2.sga Gliobla - CTCF - None - Rep2 CTCF GSM822303
45 wgEncodeOpenChromChipGlioblaInputAln.sga Gliobla - Input Input GSM822268
46 wgEncodeOpenChromChipGlioblaPol2AlnRep1.sga Gliobla - Pol2 - None - Rep1 Pol2 GSM822302
47 wgEncodeOpenChromChipGlioblaPol2AlnRep2.sga Gliobla - Pol2 - None - Rep2 Pol2 GSM822302
48 wgEncodeOpenChromChipH1hescCmycAlnRep1.sga H1-hESC - c-Myc - None - Rep1 c-Myc GSM822274
49 wgEncodeOpenChromChipH1hescCtcfAlnRep1.sga H1-hESC - CTCF - None - Rep1 CTCF GSM822297
50 wgEncodeOpenChromChipH1hescPol2AlnRep1.sga H1-hESC - Pol2 - None - Rep1 Pol2 GSM822300
51 wgEncodeOpenChromChipHuvecCmycAlnRep1.sga HUVEC - c-Myc - None - Rep1 c-Myc GSM822298
52 wgEncodeOpenChromChipHuvecCtcfAlnRep1.sga HUVEC - CTCF - None - Rep1 CTCF GSM822279
53 wgEncodeOpenChromChipHuvecCtcfAlnRep2.sga HUVEC - CTCF - None - Rep2 CTCF GSM822279
54 wgEncodeOpenChromChipHuvecInputAln.sga HUVEC - Input Input GSM822280
55 wgEncodeOpenChromChipHuvecPol2AlnRep1.sga HUVEC - Pol2 - None - Rep1 Pol2 GSM822306
56 wgEncodeOpenChromChipHuvecPol2AlnRep2.sga HUVEC - Pol2 - None - Rep2 Pol2 GSM822306
57 wgEncodeOpenChromChipHelas3CmycAlnRep1.sga HeLa-S3 - c-Myc - None - Rep1 c-Myc GSM822286
58 wgEncodeOpenChromChipHelas3CmycAlnRep2.sga HeLa-S3 - c-Myc - None - Rep2 c-Myc GSM822286
59 wgEncodeOpenChromChipHelas3CtcfAlnRep1.sga HeLa-S3 - CTCF - None - Rep1 CTCF GSM822285
60 wgEncodeOpenChromChipHelas3CtcfAlnRep2.sga HeLa-S3 - CTCF - None - Rep2 CTCF GSM822285
61 wgEncodeOpenChromChipHelas3InputAln.sga HeLa-S3 - Input Input GSM822313
62 wgEncodeOpenChromChipHelas3Pol2AlnRep1.sga HeLa-S3 - Pol2 - None - Rep1 Pol2 GSM822273
63 wgEncodeOpenChromChipHelas3Pol2AlnRep2.sga HeLa-S3 - Pol2 - None - Rep2 Pol2 GSM822273
64 wgEncodeOpenChromChipHeartocInputAln.sga Heart_OC - Input Input -
65 wgEncodeOpenChromChipHepg2CmycAlnRep1.sga HepG2 - c-Myc - None - Rep1 c-Myc GSM822291
66 wgEncodeOpenChromChipHepg2CmycAlnRep2.sga HepG2 - c-Myc - None - Rep2 c-Myc GSM822291
67 wgEncodeOpenChromChipHepg2CmycAlnRep3.sga HepG2 - c-Myc - None - Rep3 c-Myc GSM822291
68 wgEncodeOpenChromChipHepg2CtcfAlnRep1.sga HepG2 - CTCF - None - Rep1 CTCF GSM822287
69 wgEncodeOpenChromChipHepg2CtcfAlnRep2.sga HepG2 - CTCF - None - Rep2 CTCF GSM822287
70 wgEncodeOpenChromChipHepg2InputAln.sga HepG2 - Input Input GSM822314
71 wgEncodeOpenChromChipHepg2Pol2AlnRep1.sga HepG2 - Pol2 - None - Rep1 Pol2 GSM822284
72 wgEncodeOpenChromChipHepg2Pol2AlnRep2.sga HepG2 - Pol2 - None - Rep2 Pol2 GSM822284
73 wgEncodeOpenChromChipHepg2Pol2AlnRep3.sga HepG2 - Pol2 - None - Rep3 Pol2 GSM822284
74 wgEncodeOpenChromChipK562CmycAlnRep1.sga K562 - c-Myc - None - Rep1 c-Myc GSM822310
75 wgEncodeOpenChromChipK562CmycAlnRep2.sga K562 - c-Myc - None - Rep2 c-Myc GSM822310
76 wgEncodeOpenChromChipK562CmycAlnRep3.sga K562 - c-Myc - None - Rep3 c-Myc GSM822310
77 wgEncodeOpenChromChipK562CtcfAlnRep1.sga K562 - CTCF - None - Rep1 CTCF GSM822311
78 wgEncodeOpenChromChipK562CtcfAlnRep2.sga K562 - CTCF - None - Rep2 CTCF GSM822311
79 wgEncodeOpenChromChipK562CtcfAlnRep3.sga K562 - CTCF - None - Rep3 CTCF GSM822311
80 wgEncodeOpenChromChipK562InputAln.sga K562 - Input Input GSM822293
81 wgEncodeOpenChromChipK562Pol2AlnRep1.sga K562 - Pol2 - None - Rep1 Pol2 GSM822275
82 wgEncodeOpenChromChipK562Pol2AlnRep2.sga K562 - Pol2 - None - Rep2 Pol2 GSM822275
83 wgEncodeOpenChromChipKidneyocCtcfAlnRep1.sga Kidney_OC - CTCF - None - Rep1 CTCF -
84 wgEncodeOpenChromChipKidneyocCtcfAlnRep2.sga Kidney_OC - CTCF - None - Rep2 CTCF -
85 wgEncodeOpenChromChipKidneyocCtcfAlnRep3.sga Kidney_OC - CTCF - None - Rep3 CTCF -
86 wgEncodeOpenChromChipKidneyocInputAln.sga Kidney_OC - Input Input -
87 wgEncodeOpenChromChipLncapCtcfAlnRep1.sga LNCaP - CTCF - None - Rep1 CTCF -
88 wgEncodeOpenChromChipLncapCtcfAlnRep2.sga LNCaP - CTCF - None - Rep2 CTCF -
89 wgEncodeOpenChromChipLncapCtcfAndroAlnRep1.sga LNCaP - CTCF - androgen - Rep1 CTCF -
90 wgEncodeOpenChromChipLncapCtcfAndroAlnRep2.sga LNCaP - CTCF - androgen - Rep2 CTCF -
91 wgEncodeOpenChromChipLncapInputAln.sga LNCaP - Input Input -
92 wgEncodeOpenChromChipLungocCtcfAlnRep1.sga Lung_OC - CTCF - androgen - Rep1 CTCF -
93 wgEncodeOpenChromChipLungocCtcfAlnRep2.sga Lung_OC - CTCF - androgen - Rep2 CTCF -
94 wgEncodeOpenChromChipLungocInputAln.sga Lung_OC - Input Input -
95 wgEncodeOpenChromChipMcf7CmycEstroAlnRep1.sga MCF-7 - c-Myc - estrogen - Rep1 c-Myc GSM822304
96 wgEncodeOpenChromChipMcf7CmycEstroAlnRep2.sga MCF-7 - c-Myc - estrogen - Rep2 c-Myc GSM822304
97 wgEncodeOpenChromChipMcf7CmycSerumstimAlnRep1.sga MCF-7 - c-Myc - serum_stimulated_media - Rep1 c-Myc -
98 wgEncodeOpenChromChipMcf7CmycSerumstimAlnRep2.sga MCF-7 - c-Myc - serum_stimulated_media - Rep2 c-Myc -
99 wgEncodeOpenChromChipMcf7CmycSerumstvdAlnRep1.sga MCF-7 - c-Myc - serum_starved_media - Rep1 c-Myc -
100 wgEncodeOpenChromChipMcf7CmycSerumstvdAlnRep2.sga MCF-7 - c-Myc - serum_starved_media - Rep2 c-Myc -
101 wgEncodeOpenChromChipMcf7CmycVehAlnRep1.sga MCF-7 - c-Myc - vehicle - Rep1 c-Myc GSM822301
102 wgEncodeOpenChromChipMcf7CmycVehAlnRep2.sga MCF-7 - c-Myc - vehicle - Rep2 c-Myc GSM822301
103 wgEncodeOpenChromChipMcf7CtcfAlnRep1.sga MCF-7 - CTCF - None - Rep1 CTCF GSM822305
104 wgEncodeOpenChromChipMcf7CtcfAlnRep2.sga MCF-7 - CTCF - None - Rep2 CTCF GSM822305
105 wgEncodeOpenChromChipMcf7CtcfEstroAlnRep1.sga MCF-7 - CTCF - estrogen - Rep1 CTCF GSM822309
106 wgEncodeOpenChromChipMcf7CtcfEstroAlnRep2.sga MCF-7 - CTCF - estrogen - Rep2 CTCF GSM822309
107 wgEncodeOpenChromChipMcf7CtcfSerumstimAlnRep1.sga MCF-7 - CTCF - serum_stimulated_media - Rep1 CTCF -
108 wgEncodeOpenChromChipMcf7CtcfSerumstimAlnRep2.sga MCF-7 - CTCF - serum_stimulated_media - Rep2 CTCF -
109 wgEncodeOpenChromChipMcf7CtcfSerumstvdAlnRep1.sga MCF-7 - CTCF - serum_starved_media - Rep1 CTCF -
110 wgEncodeOpenChromChipMcf7CtcfSerumstvdAlnRep2.sga MCF-7 - CTCF - serum_starved_media - Rep2 CTCF -
111 wgEncodeOpenChromChipMcf7CtcfVehAlnRep1.sga MCF-7 - CTCF - vehicle - Rep1 CTCF GSM822308
112 wgEncodeOpenChromChipMcf7CtcfVehAlnRep2.sga MCF-7 - CTCF - vehicle - Rep2 CTCF GSM822308
113 wgEncodeOpenChromChipMcf7InputAln.sga MCF-7 - Input Input GSM822283
114 wgEncodeOpenChromChipMcf7Pol2AlnRep1.sga MCF-7 - Pol2 - None - Rep1 Pol2 GSM822295
115 wgEncodeOpenChromChipMcf7Pol2AlnRep2.sga MCF-7 - Pol2 - None - Rep2 Pol2 GSM822295
116 wgEncodeOpenChromChipMcf7Pol2SerumstimAlnRep1.sga MCF-7 - Pol2 - serum_stimulated_media - Rep1 Pol2 -
117 wgEncodeOpenChromChipMcf7Pol2SerumstimAlnRep2.sga MCF-7 - Pol2 - serum_stimulated_media - Rep2 Pol2 -
118 wgEncodeOpenChromChipMcf7Pol2SerumstvdAlnRep1.sga MCF-7 - Pol2 - serum_starved_media - Rep1 Pol2 -
119 wgEncodeOpenChromChipMcf7Pol2SerumstvdAlnRep2.sga MCF-7 - Pol2 - serum_starved_media - Rep2 Pol2 -
120 wgEncodeOpenChromChipMedulloCtcfAlnRep1.sga Medullo - CTCF - serum_starved_media - Rep1 CTCF -
121 wgEncodeOpenChromChipMedulloCtcfAlnRep2.sga Medullo - CTCF - serum_starved_media - Rep2 CTCF -
122 wgEncodeOpenChromChipMedulloInputAln.sga Medullo - Input Input -
123 wgEncodeOpenChromChipMonocd14InputAln.sga Monocytes-CD14+_RO01746 - Input Input GSM822296
124 wgEncodeOpenChromChipMonocd14ro1746InputAln.sga Monocytes-CD14+_RO01746 - Input Input GSM822296
125 wgEncodeOpenChromChipNhekCtcfAlnRep1.sga NHEK - CTCF - None - Rep1 CTCF GSM822271
126 wgEncodeOpenChromChipNhekCtcfAlnRep2.sga NHEK - CTCF - None - Rep2 CTCF GSM822271
127 wgEncodeOpenChromChipPancreasocCtcfAlnRep1.sga Pancreas_OC - CTCF - None - Rep1 CTCF -
128 wgEncodeOpenChromChipPancreasocCtcfAlnRep2.sga Pancreas_OC - CTCF - None - Rep2 CTCF -
129 wgEncodeOpenChromChipPancreasocInputAln.sga Pancreas_OC - Input Input -
130 wgEncodeOpenChromChipProgfibCtcfAlnRep1.sga ProgFib - CTCF - None - Rep1 CTCF GSM822272
131 wgEncodeOpenChromChipProgfibCtcfAlnRep2.sga ProgFib - CTCF - None - Rep2 CTCF GSM822272
132 wgEncodeOpenChromChipProgfibInputAln.sga ProgFib - Input Input GSM822269
133 wgEncodeOpenChromChipProgfibPol2AlnRep1.sga ProgFib - Pol2 - None - Rep1 Pol2 GSM822282
134 wgEncodeOpenChromChipProgfibPol2AlnRep2.sga ProgFib - Pol2 - None - Rep2 Pol2 GSM822282
135 wgEncodeOpenChromChipSpleenocCtcfAlnRep1.sga Spleen_OC - CTCF - None - Rep1 CTCF -
136 wgEncodeOpenChromChipSpleenocCtcfAlnRep2.sga Spleen_OC - CTCF - None - Rep2 CTCF -
137 wgEncodeOpenChromChipSpleenocInputAln.sga Spleen_OC - Input Input -

Peak Files [Human Feb. 2009 (GRCh37/hg19) Assembly]

Filename Description Feature GEO-ID
1 wgEncodeOpenChromChipA549CtcfPkRep1_peak.sga A549 - CTCF - None - peaks CTCF_P GSM822289
2 wgEncodeOpenChromChipA549Pol2PkRep1_peak.sga A549 - Pol2 - None - peaks Pol2_P GSM822288
3 wgEncodeOpenChromChipFibroblCtcfPkRep1_peak.sga Fibrobl - CTCF - None - peaks CTCF_P GSM822281
4 wgEncodeOpenChromChipGm10248CtcfPkRep1_peak.sga GM10248 - CTCF - None - peaks CTCF_P GSM1006891
5 wgEncodeOpenChromChipGm10266CtcfPkRep1_peak.sga GM10266 - CTCF - None - peaks CTCF_P GSM1006870
6 wgEncodeOpenChromChipGm12878CmycPk_peak.sga GM12878 - c-Myc - None - peaks c-Myc_P GSM822290
7 wgEncodeOpenChromChipGm12878CtcfPkRep1_peak.sga GM12878 - CTCF - None - peaks CTCF_P GSM822312
8 wgEncodeOpenChromChipGm12878Pol2Pk_peak.sga GM12878 - Pol2 - None - peaks Pol2_P GSM822270
9 wgEncodeOpenChromChipGm12891CtcfPk_peak.sga GM12891 - CTCF - None - peaks CTCF_P GSM822294
10 wgEncodeOpenChromChipGm12892CtcfPk_peak.sga GM12892 - CTCF - None - peaks CTCF_P GSM822299
11 wgEncodeOpenChromChipGm13976CtcfPkRep1_peak.sga GM13976 - CTCF - None - peaks CTCF_P GSM1006885
12 wgEncodeOpenChromChipGm13977CtcfPkRep1_peak.sga GM13977 - CTCF - None - peaks CTCF_P GSM1006869
13 wgEncodeOpenChromChipGm19238CtcfPk_peak.sga GM19238 - CTCF - None - peaks CTCF_P GSM822278
14 wgEncodeOpenChromChipGm19239CtcfPk_peak.sga GM19239 - CTCF - None - peaks CTCF_P GSM822277
15 wgEncodeOpenChromChipGm19240CtcfPk_peak.sga GM19240 - CTCF - None - peaks CTCF_P GSM822276
16 wgEncodeOpenChromChipGm20000CtcfPkRep1_peak.sga GM20000 - CTCF - None - peaks CTCF_P GSM1006873
17 wgEncodeOpenChromChipGlioblaCtcfPkRep1_peak.sga Gliobla - CTCF - None - peaks CTCF_P GSM822303
18 wgEncodeOpenChromChipGlioblaPol2PkRep1_peak.sga Gliobla - Pol2 - None - peaks Pol2_P GSM822302
19 wgEncodeOpenChromChipH1hescCmycPk_peak.sga H1-hESC - c-Myc - None - peaks c-Myc_P GSM822274
20 wgEncodeOpenChromChipH1hescCtcfPk_peak.sga H1-hESC - CTCF - None - peaks CTCF_P GSM822297
21 wgEncodeOpenChromChipH1hescPol2Pk_peak.sga H1-hESC - Pol2 - None - peaks Pol2_P GSM822300
22 wgEncodeOpenChromChipHuvecCmycPk_peak.sga HUVEC - c-Myc - None - peaks c-Myc_P GSM822298
23 wgEncodeOpenChromChipHuvecCtcfPk_peak.sga HUVEC - CTCF - None - peaks CTCF_P GSM822279
24 wgEncodeOpenChromChipHuvecPol2Pk_peak.sga HUVEC - Pol2 - None - peaks Pol2_P GSM822306
25 wgEncodeOpenChromChipHelas3CmycPk_peak.sga HeLa-S3 - c-Myc - None - peaks c-Myc_P GSM822286
26 wgEncodeOpenChromChipHelas3CtcfPk_peak.sga HeLa-S3 - CTCF - None - peaks CTCF_P GSM822285
27 wgEncodeOpenChromChipHelas3Pol2Pk_peak.sga HeLa-S3 - Pol2 - None - peaks Pol2_P GSM822273
28 wgEncodeOpenChromChipHepg2CmycPk_peak.sga HepG2 - c-Myc - None - peaks c-Myc_P GSM822291
29 wgEncodeOpenChromChipHepg2CtcfPk_peak.sga HepG2 - CTCF - None - peaks CTCF_P GSM822287
30 wgEncodeOpenChromChipHepg2Pol2Pk_peak.sga HepG2 - Pol2 - None - peaks Pol2_P GSM822284
31 wgEncodeOpenChromChipK562CmycPk_peak.sga K562 - c-Myc - None - peaks c-Myc_P GSM822310
32 wgEncodeOpenChromChipK562CtcfPk_peak.sga K562 - CTCF - None - peaks CTCF_P GSM822311
33 wgEncodeOpenChromChipK562Pol2Pk_peak.sga K562 - Pol2 - None - peaks Pol2_P GSM822275
34 wgEncodeOpenChromChipKidneyocCtcfPkRep1_peak.sga Kidney_OC - CTCF - None - peaks CTCF_P GSM1006886
35 wgEncodeOpenChromChipLncapCtcfAndroPkRep1_peak.sga LNCaP - CTCF - androgen - peaks CTCF_P GSM1006887
36 wgEncodeOpenChromChipLncapCtcfPkRep1_peak.sga LNCaP - CTCF - androgen - peaks CTCF_P GSM1006874
37 wgEncodeOpenChromChipLungocCtcfPkRep1_peak.sga Lung_OC - CTCF - androgen - peaks CTCF_P GSM1006882
38 wgEncodeOpenChromChipMcf7CmycEstroPkRep1_peak.sga MCF-7 - c-Myc - estrogen - peaks c-Myc_P GSM822304
39 wgEncodeOpenChromChipMcf7CmycSerumstimPkRep1_peak.sga MCF-7 - c-Myc - serum_stimulated_media - peaks c-Myc_P GSM1006877
40 wgEncodeOpenChromChipMcf7CmycSerumstvdPkRep1_peak.sga MCF-7 - c-Myc - serum_starved_media - peaks c-Myc_P GSM1006866
41 wgEncodeOpenChromChipMcf7CmycVehPkRep1_peak.sga MCF-7 - c-Myc - vehicle - peaks c-Myc_P GSM822301
42 wgEncodeOpenChromChipMcf7CtcfEstroPkRep1_peak.sga MCF-7 - CTCF - estrogen - peaks CTCF_P GSM822309
43 wgEncodeOpenChromChipMcf7CtcfPk_peak.sga MCF-7 - CTCF - None - peaks CTCF_P GSM822305
44 wgEncodeOpenChromChipMcf7CtcfSerumstimPkRep1_peak.sga MCF-7 - CTCF - serum_stimulated_media - peaks CTCF_P GSM1006875
45 wgEncodeOpenChromChipMcf7CtcfSerumstvdPkRep1_peak.sga MCF-7 - CTCF - serum_starved_media - peaks CTCF_P GSM1006878
46 wgEncodeOpenChromChipMcf7CtcfVehPkRep1_peak.sga MCF-7 - CTCF - vehicle - peaks CTCF_P GSM822308
47 wgEncodeOpenChromChipMcf7Pol2PkRep1_peak.sga MCF-7 - Pol2 - None - peaks Pol2_P GSM822295
48 wgEncodeOpenChromChipMcf7Pol2SerumstimPkRep1_peak.sga MCF-7 - Pol2 - serum_stimulated_media - peaks Pol2_P GSM1006876
49 wgEncodeOpenChromChipMcf7Pol2SerumstvdPkRep1_peak.sga MCF-7 - Pol2 - serum_starved_media - peaks Pol2_P GSM1006865
50 wgEncodeOpenChromChipMedulloCtcfPkRep1_peak.sga Medullo - CTCF - serum_starved_media - peaks CTCF_P GSM1006893
51 wgEncodeOpenChromChipNhekCtcfPk_peak.sga NHEK - CTCF - None - peaks CTCF_P GSM822271
52 wgEncodeOpenChromChipPancreasocCtcfPkRep1_peak.sga Pancreas_OC - CTCF - None - peaks CTCF_P GSM1006881
53 wgEncodeOpenChromChipProgfibCtcfPkRep1_peak.sga ProgFib - CTCF - None - peaks CTCF_P GSM822272
54 wgEncodeOpenChromChipProgfibPol2PkRep1_peak.sga ProgFib - Pol2 - None - peaks Pol2_P GSM822282
55 wgEncodeOpenChromChipSpleenocCtcfPkRep1_peak.sga Spleen_OC - CTCF - None - peaks CTCF_P GSM1006883

Technical Notes

BAM and narrowPeak files were downloaded from UCSC and converted in sga format using bamToBed (SamTools) and bed2sga (ChIP-seq).

References

  1. GEO series GSE33213 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)