Wang et al. 2012, CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington

Description:

This samples serie displays maps of genome-wide binding of the CTCF transcription factor in different cell lines and different conditions. Additional peak files are also provided.

Source

Files downloaded from the UCSC Genome Browser via URL: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwTfbs
Input file format: BAM and narrowPeak

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly

Filename Description Feature GEO-ID
1 wgEncodeUwTfbsA549CtcfStdAlnRep1.sga A549 - CTCF - None - Rep1 CTCF -
2 wgEncodeUwTfbsA549CtcfStdAlnRep2.sga A549 - CTCF - None - Rep2 CTCF -
3 wgEncodeUwTfbsA549InputStdAlnRep1.sga A549 - Input - None - Rep1 Input -
4 wgEncodeUwTfbsAg04449CtcfStdAlnRep1.sga AG04449 - CTCF - None - Rep1 CTCF GSM749695
5 wgEncodeUwTfbsAg04449CtcfStdAlnRep2.sga AG04449 - CTCF - None - Rep2 CTCF GSM749678
6 wgEncodeUwTfbsAg04449InputStdAlnRep1.sga AG04449 - Input - None - Rep1 Input GSM749702
7 wgEncodeUwTfbsAg04450CtcfStdAlnRep1.sga AG04450 - CTCF - None - Rep1 CTCF GSM749769
8 wgEncodeUwTfbsAg04450CtcfStdAlnRep2.sga AG04450 - CTCF - None - Rep2 CTCF -
9 wgEncodeUwTfbsAg04450InputStdAlnRep1.sga AG04450 - Input - None - Rep1 Input GSM749697
10 wgEncodeUwTfbsAg09309CtcfStdAlnRep1.sga AG09309 - CTCF - None - Rep1 CTCF GSM749750
11 wgEncodeUwTfbsAg09309CtcfStdAlnRep2.sga AG09309 - CTCF - None - Rep2 CTCF GSM749680
12 wgEncodeUwTfbsAg09309InputStdAlnRep1.sga AG09309 - Input - None - Rep1 Input GSM749718
13 wgEncodeUwTfbsAg09319CtcfStdAlnRep1.sga AG09319 - CTCF - None - Rep1 CTCF GSM749728
14 wgEncodeUwTfbsAg09319CtcfStdAlnRep2.sga AG09319 - CTCF - None - Rep2 CTCF GSM749723
15 wgEncodeUwTfbsAg09319InputStdAlnRep1.sga AG09319 - Input - None - Rep1 Input GSM749671
16 wgEncodeUwTfbsAg10803CtcfStdAlnRep1.sga AG10803 - CTCF - None - Rep1 CTCF GSM749714
17 wgEncodeUwTfbsAg10803CtcfStdAlnRep2.sga AG10803 - CTCF - None - Rep2 CTCF GSM749759
18 wgEncodeUwTfbsAg10803InputStdAlnRep1.sga AG10803 - Input - None - Rep1 Input GSM749734
19 wgEncodeUwTfbsAoafCtcfStdAlnRep1.sga AoAF - CTCF - None - Rep1 CTCF GSM749666
20 wgEncodeUwTfbsAoafCtcfStdAlnRep2.sga AoAF - CTCF - None - Rep2 CTCF GSM749736
21 wgEncodeUwTfbsAoafInputStdAlnRep1.sga AoAF - Input - None - Rep1 Input GSM749772
22 wgEncodeUwTfbsBe2cCtcfStdAlnRep1.sga BE2_C - CTCF - None - Rep1 CTCF -
23 wgEncodeUwTfbsBe2cCtcfStdAlnRep2.sga BE2_C - CTCF - None - Rep2 CTCF -
24 wgEncodeUwTfbsBe2cInputStdAlnRep1.sga BE2_C - Input - None - Rep1 Input -
25 wgEncodeUwTfbsBjCtcfStdAlnRep1.sga BJ - CTCF - None - Rep1 CTCF GSM749677
26 wgEncodeUwTfbsBjCtcfStdAlnRep2.sga BJ - CTCF - None - Rep2 CTCF GSM749752
27 wgEncodeUwTfbsBjInputStdAlnRep1.sga BJ - Input - None - Rep1 Input GSM749770
28 wgEncodeUwTfbsCd20ro01778InputStdAlnRep1.sga CD20+_RO01778 - Input - None - Rep1 Input -
29 wgEncodeUwTfbsCd20ro01794InputStdAlnRep1.sga CD20+_RO01794 - Input - None - Rep1 Input -
30 wgEncodeUwTfbsCaco2CtcfStdAlnRep1.sga Caco-2 - CTCF - None - Rep1 CTCF GSM749748
31 wgEncodeUwTfbsCaco2CtcfStdAlnRep2.sga Caco-2 - CTCF - None - Rep2 CTCF GSM749689
32 wgEncodeUwTfbsCaco2InputStdAlnRep1.sga Caco-2 - Input - None - Rep1 Input GSM749691
33 wgEncodeUwTfbsGm06990CtcfStdAlnRep1.sga GM06990 - CTCF - None - Rep1 CTCF GSM749708
34 wgEncodeUwTfbsGm06990CtcfStdAlnRep2.sga GM06990 - CTCF - None - Rep2 CTCF GSM749705
35 wgEncodeUwTfbsGm06990InputStdAlnRep1.sga GM06990 - Input - None - Rep1 Input GSM749731
36 wgEncodeUwTfbsGm12801CtcfStdAlnRep1.sga GM12801 - CTCF - None - Rep1 CTCF GSM749711
37 wgEncodeUwTfbsGm12801InputStdAlnRep1.sga GM12801 - Input - None - Rep1 Input GSM749701
38 wgEncodeUwTfbsGm12864CtcfStdAlnRep1.sga GM12864 - CTCF - None - Rep1 CTCF GSM749676
39 wgEncodeUwTfbsGm12864CtcfStdAlnRep2.sga GM12864 - CTCF - None - Rep2 CTCF GSM749762
40 wgEncodeUwTfbsGm12864CtcfStdAlnRep3.sga GM12864 - CTCF - None - Rep3 CTCF -
41 wgEncodeUwTfbsGm12864InputStdAlnRep1.sga GM12864 - Input - None - Rep1 Input GSM749754
42 wgEncodeUwTfbsGm12865CtcfStdAlnRep1.sga GM12865 - CTCF - None - Rep1 CTCF GSM749740
43 wgEncodeUwTfbsGm12865CtcfStdAlnRep2.sga GM12865 - CTCF - None - Rep2 CTCF GSM749725
44 wgEncodeUwTfbsGm12865CtcfStdAlnRep3.sga GM12865 - CTCF - None - Rep3 CTCF -
45 wgEncodeUwTfbsGm12865InputStdAlnRep1.sga GM12865 - Input - None - Rep1 Input GSM749777
46 wgEncodeUwTfbsGm12866CtcfStdAlnRep1.sga GM12866 - CTCF - None - Rep1 CTCF -
47 wgEncodeUwTfbsGm12866CtcfStdAlnRep2.sga GM12866 - CTCF - None - Rep2 CTCF -
48 wgEncodeUwTfbsGm12867CtcfStdAlnRep1.sga GM12867 - CTCF - None - Rep1 CTCF -
49 wgEncodeUwTfbsGm12867CtcfStdAlnRep2.sga GM12867 - CTCF - None - Rep2 CTCF -
50 wgEncodeUwTfbsGm12868CtcfStdAlnRep1.sga GM12868 - CTCF - None - Rep1 CTCF -
51 wgEncodeUwTfbsGm12868CtcfStdAlnRep2.sga GM12868 - CTCF - None - Rep2 CTCF -
52 wgEncodeUwTfbsGm12869CtcfStdAlnRep1.sga GM12869 - CTCF - None - Rep1 CTCF -
53 wgEncodeUwTfbsGm12869CtcfStdAlnRep2.sga GM12869 - CTCF - None - Rep2 CTCF -
54 wgEncodeUwTfbsGm12870CtcfStdAlnRep1.sga GM12870 - CTCF - None - Rep1 CTCF -
55 wgEncodeUwTfbsGm12870CtcfStdAlnRep2.sga GM12870 - CTCF - None - Rep2 CTCF -
56 wgEncodeUwTfbsGm12871CtcfStdAlnRep1.sga GM12871 - CTCF - None - Rep1 CTCF -
57 wgEncodeUwTfbsGm12871CtcfStdAlnRep2.sga GM12871 - CTCF - None - Rep2 CTCF -
58 wgEncodeUwTfbsGm12872CtcfStdAlnRep1.sga GM12872 - CTCF - None - Rep1 CTCF GSM749694
59 wgEncodeUwTfbsGm12872CtcfStdAlnRep2.sga GM12872 - CTCF - None - Rep2 CTCF GSM749692
60 wgEncodeUwTfbsGm12872CtcfStdAlnRep3.sga GM12872 - CTCF - None - Rep3 CTCF -
61 wgEncodeUwTfbsGm12872InputStdAlnRep1.sga GM12872 - Input - None - Rep1 Input GSM749765
62 wgEncodeUwTfbsGm12873CtcfStdAlnRep1.sga GM12873 - CTCF - None - Rep1 CTCF GSM749730
63 wgEncodeUwTfbsGm12873CtcfStdAlnRep2.sga GM12873 - CTCF - None - Rep2 CTCF GSM749686
64 wgEncodeUwTfbsGm12873CtcfStdAlnRep3.sga GM12873 - CTCF - None - Rep3 CTCF -
65 wgEncodeUwTfbsGm12873InputStdAlnRep1.sga GM12873 - Input - None - Rep1 Input GSM749685
66 wgEncodeUwTfbsGm12874CtcfStdAlnRep1.sga GM12874 - CTCF - None - Rep1 CTCF GSM749757
67 wgEncodeUwTfbsGm12874CtcfStdAlnRep2.sga GM12874 - CTCF - None - Rep2 CTCF GSM749741
68 wgEncodeUwTfbsGm12874InputStdAlnRep1.sga GM12874 - Input - None - Rep1 Input GSM749742
69 wgEncodeUwTfbsGm12875CtcfStdAlnRep1.sga GM12875 - CTCF - None - Rep1 CTCF GSM749764
70 wgEncodeUwTfbsGm12875CtcfStdAlnRep2.sga GM12875 - CTCF - None - Rep2 CTCF GSM749670
71 wgEncodeUwTfbsGm12875InputStdAlnRep1.sga GM12875 - Input - None - Rep1 Input GSM749724
72 wgEncodeUwTfbsGm12878CtcfStdAlnRep1.sga GM12878 - CTCF - None - Rep1 CTCF GSM749704
73 wgEncodeUwTfbsGm12878CtcfStdAlnRep2.sga GM12878 - CTCF - None - Rep2 CTCF GSM749706
74 wgEncodeUwTfbsGm12878InputStdAlnRep1.sga GM12878 - Input - None - Rep1 Input GSM749669
75 wgEncodeUwTfbsH7esInputStdAlnRep1.sga H7-hESC - Input - diffProtA_14d - Rep1 Input -
76 wgEncodeUwTfbsH7esInputStdDiffa2dAlnRep1.sga H7-hESC - Input - diffProtA_2d - Rep1 Input -
77 wgEncodeUwTfbsH7esInputStdDiffa5dAlnRep1.sga H7-hESC - Input - diffProtA_5d - Rep1 Input -
78 wgEncodeUwTfbsH7esInputStdDiffa9dAlnRep1.sga H7-hESC - Input - diffProtA_9d - Rep1 Input -
79 wgEncodeUwTfbsHaspCtcfStdAlnRep1.sga HA-sp - CTCF - None - Rep1 CTCF GSM749696
80 wgEncodeUwTfbsHaspCtcfStdAlnRep2.sga HA-sp - CTCF - None - Rep2 CTCF -
81 wgEncodeUwTfbsHaspInputStdAlnRep1.sga HA-sp - Input - None - Rep1 Input GSM749720
82 wgEncodeUwTfbsHacCtcfStdAlnRep1.sga HAc - CTCF - None - Rep1 CTCF -
83 wgEncodeUwTfbsHacCtcfStdAlnRep2.sga HAc - CTCF - None - Rep2 CTCF -
84 wgEncodeUwTfbsHacInputStdAlnRep1.sga HAc - Input - None - Rep1 Input -
85 wgEncodeUwTfbsHbmecCtcfStdAlnRep1.sga HBMEC - CTCF - None - Rep1 CTCF GSM749743
86 wgEncodeUwTfbsHbmecCtcfStdAlnRep2.sga HBMEC - CTCF - None - Rep2 CTCF GSM749710
87 wgEncodeUwTfbsHbmecInputStdAlnRep1.sga HBMEC - Input - None - Rep1 Input GSM749746
88 wgEncodeUwTfbsHcfInputStdAlnRep1.sga HCF - Input - None - Rep1 Input GSM749713
89 wgEncodeUwTfbsHcfaaCtcfStdAlnRep1.sga HCFaa - CTCF - None - Rep1 CTCF GSM749732
90 wgEncodeUwTfbsHcfaaInputStdAlnRep1.sga HCFaa - Input - None - Rep1 Input GSM749761
91 wgEncodeUwTfbsHcmCtcfStdAlnRep1.sga HCM - CTCF - None - Rep1 CTCF -
92 wgEncodeUwTfbsHcmCtcfStdAlnRep2.sga HCM - CTCF - None - Rep2 CTCF -
93 wgEncodeUwTfbsHcmInputStdAlnRep1.sga HCM - Input - None - Rep1 Input GSM749738
94 wgEncodeUwTfbsHcpeCtcfStdAlnRep1.sga HCPEpiC - CTCF - None - Rep1 CTCF GSM749735
95 wgEncodeUwTfbsHcpeCtcfStdAlnRep2.sga HCPEpiC - CTCF - None - Rep2 CTCF GSM749745
96 wgEncodeUwTfbsHcpeInputStdAlnRep1.sga HCPEpiC - Input - None - Rep1 Input GSM749776
97 wgEncodeUwTfbsHct116CtcfStdAlnRep1.sga HCT-116 - CTCF - None - Rep1 CTCF -
98 wgEncodeUwTfbsHct116CtcfStdAlnRep2.sga HCT-116 - CTCF - None - Rep2 CTCF -
99 wgEncodeUwTfbsHct116InputStdAlnRep1.sga HCT-116 - Input - None - Rep1 Input GSM749774
100 wgEncodeUwTfbsHeeCtcfStdAlnRep1.sga HEEpiC - CTCF - None - Rep1 CTCF GSM749712
101 wgEncodeUwTfbsHeeCtcfStdAlnRep2.sga HEEpiC - CTCF - None - Rep2 CTCF GSM749726
102 wgEncodeUwTfbsHeeInputStdAlnRep1.sga HEEpiC - Input - None - Rep1 Input GSM749698
103 wgEncodeUwTfbsHek293CtcfStdAlnRep1.sga HEK293 - CTCF - None - Rep1 CTCF GSM749668
104 wgEncodeUwTfbsHek293CtcfStdAlnRep2.sga HEK293 - CTCF - None - Rep2 CTCF GSM749687
105 wgEncodeUwTfbsHek293InputStdAlnRep1.sga HEK293 - Input - None - Rep1 Input GSM749767
106 wgEncodeUwTfbsHffCtcfStdAlnRep1.sga HFF - CTCF - None - Rep1 CTCF -
107 wgEncodeUwTfbsHffInputStdAlnRep1.sga HFF - Input - None - Rep1 Input -
108 wgEncodeUwTfbsHffmycCtcfStdAlnRep1.sga HFF-Myc - CTCF - None - Rep1 CTCF -
109 wgEncodeUwTfbsHffmycCtcfStdAlnRep2.sga HFF-Myc - CTCF - None - Rep2 CTCF -
110 wgEncodeUwTfbsHffmycInputStdAlnRep1.sga HFF-Myc - Input - None - Rep1 Input -
111 wgEncodeUwTfbsHl60CtcfStdAlnRep1.sga HL-60 - CTCF - None - Rep1 CTCF GSM749688
112 wgEncodeUwTfbsHl60InputStdAlnRep1.sga HL-60 - Input - None - Rep1 Input GSM749775
113 wgEncodeUwTfbsHmecCtcfStdAlnRep1.sga HMEC - CTCF - None - Rep1 CTCF GSM749753
114 wgEncodeUwTfbsHmecCtcfStdAlnRep2.sga HMEC - CTCF - None - Rep2 CTCF -
115 wgEncodeUwTfbsHmecInputStdAlnRep1.sga HMEC - Input - None - Rep1 Input GSM749755
116 wgEncodeUwTfbsHmfCtcfStdAlnRep1.sga HMF - CTCF - None - Rep1 CTCF GSM749665
117 wgEncodeUwTfbsHmfCtcfStdAlnRep2.sga HMF - CTCF - None - Rep2 CTCF GSM749675
118 wgEncodeUwTfbsHmfInputStdAlnRep1.sga HMF - Input - None - Rep1 Input GSM749763
119 wgEncodeUwTfbsHpafCtcfStdAlnRep1.sga HPAF - CTCF - None - Rep1 CTCF GSM749681
120 wgEncodeUwTfbsHpafCtcfStdAlnRep2.sga HPAF - CTCF - None - Rep2 CTCF GSM749751
121 wgEncodeUwTfbsHpafInputStdAlnRep1.sga HPAF - Input - None - Rep1 Input GSM749709
122 wgEncodeUwTfbsHpfCtcfStdAlnRep1.sga HPF - CTCF - None - Rep1 CTCF GSM749699
123 wgEncodeUwTfbsHpfCtcfStdAlnRep2.sga HPF - CTCF - None - Rep2 CTCF GSM749717
124 wgEncodeUwTfbsHpfInputStdAlnRep1.sga HPF - Input - None - Rep1 Input GSM749773
125 wgEncodeUwTfbsHreCtcfStdAlnRep1.sga HRE - CTCF - None - Rep1 CTCF GSM749727
126 wgEncodeUwTfbsHreCtcfStdAlnRep2.sga HRE - CTCF - None - Rep2 CTCF GSM749737
127 wgEncodeUwTfbsHreInputStdAlnRep1.sga HRE - Input - None - Rep1 Input GSM749778
128 wgEncodeUwTfbsHrpeCtcfStdAlnRep1.sga HRPEpiC - CTCF - None - Rep1 CTCF GSM749673
129 wgEncodeUwTfbsHrpeCtcfStdAlnRep2.sga HRPEpiC - CTCF - None - Rep2 CTCF -
130 wgEncodeUwTfbsHrpeInputStdAlnRep1.sga HRPEpiC - Input - None - Rep1 Input GSM749771
131 wgEncodeUwTfbsHuvecCtcfStdAlnRep1.sga HUVEC - CTCF - None - Rep1 CTCF GSM749674
132 wgEncodeUwTfbsHuvecCtcfStdAlnRep2.sga HUVEC - CTCF - None - Rep2 CTCF GSM749749
133 wgEncodeUwTfbsHuvecInputStdAlnRep1.sga HUVEC - Input - None - Rep1 Input GSM749758
134 wgEncodeUwTfbsHvmfCtcfStdAlnRep1.sga HVMF - CTCF - None - Rep1 CTCF -
135 wgEncodeUwTfbsHvmfCtcfStdAlnRep2.sga HVMF - CTCF - None - Rep2 CTCF -
136 wgEncodeUwTfbsHvmfInputStdAlnRep1.sga HVMF - Input - None - Rep1 Input GSM749703
137 wgEncodeUwTfbsHelas3CtcfStdAlnRep1.sga HeLa-S3 - CTCF - None - Rep1 CTCF GSM749729
138 wgEncodeUwTfbsHelas3CtcfStdAlnRep2.sga HeLa-S3 - CTCF - None - Rep2 CTCF GSM749739
139 wgEncodeUwTfbsHelas3InputStdAlnRep1.sga HeLa-S3 - Input - None - Rep1 Input GSM749721
140 wgEncodeUwTfbsHepg2CtcfStdAlnRep1.sga HepG2 - CTCF - None - Rep1 CTCF GSM749715
141 wgEncodeUwTfbsHepg2CtcfStdAlnRep2.sga HepG2 - CTCF - None - Rep2 CTCF GSM749683
142 wgEncodeUwTfbsHepg2InputStdAlnRep1.sga HepG2 - Input - None - Rep1 Input GSM749756
143 wgEncodeUwTfbsJurkatInputStdAlnRep1.sga Jurkat - Input - None - Rep1 Input GSM749672
144 wgEncodeUwTfbsK562CtcfStdAlnRep1.sga K562 - CTCF - None - Rep1 CTCF GSM749690
145 wgEncodeUwTfbsK562CtcfStdAlnRep2.sga K562 - CTCF - None - Rep2 CTCF GSM749733
146 wgEncodeUwTfbsK562InputStdAlnRep1.sga K562 - Input - None - Rep1 Input GSM749719
147 wgEncodeUwTfbsLncapInputStdAlnRep1.sga LNCaP - Input - None - Rep1 Input -
148 wgEncodeUwTfbsMcf7CtcfStdAlnRep1.sga MCF-7 - CTCF - None - Rep1 CTCF -
149 wgEncodeUwTfbsMcf7CtcfStdAlnRep2.sga MCF-7 - CTCF - None - Rep2 CTCF -
150 wgEncodeUwTfbsMcf7InputStdAlnRep1.sga MCF-7 - Input - None - Rep1 Input GSM749760
151 wgEncodeUwTfbsMonocd14ro1746InputStdAlnRep1.sga Monocytes-CD14+_RO01746 - Input - None - Rep1 Input -
152 wgEncodeUwTfbsNb4CtcfStdAlnRep1.sga NB4 - CTCF - None - Rep1 CTCF -
153 wgEncodeUwTfbsNb4InputStdAlnRep1.sga NB4 - Input - None - Rep1 Input GSM749716
154 wgEncodeUwTfbsNhdfneoCtcfStdAlnRep1.sga NHDF-neo - CTCF - None - Rep1 CTCF -
155 wgEncodeUwTfbsNhdfneoCtcfStdAlnRep2.sga NHDF-neo - CTCF - None - Rep2 CTCF -
156 wgEncodeUwTfbsNhdfneoInputStdAlnRep1.sga NHDF-neo - Input - None - Rep1 Input GSM749722
157 wgEncodeUwTfbsNhekCtcfStdAlnRep1.sga NHEK - CTCF - None - Rep1 CTCF GSM749707
158 wgEncodeUwTfbsNhekCtcfStdAlnRep2.sga NHEK - CTCF - None - Rep2 CTCF GSM749747
159 wgEncodeUwTfbsNhekInputStdAlnRep1.sga NHEK - Input - None - Rep1 Input GSM749744
160 wgEncodeUwTfbsNhlfCtcfStdAlnRep1.sga NHLF - CTCF - None - Rep1 CTCF -
161 wgEncodeUwTfbsNhlfInputStdAlnRep1.sga NHLF - Input - None - Rep1 Input -
162 wgEncodeUwTfbsPanc1InputStdAlnRep1.sga PANC-1 - Input - None - Rep1 Input -
163 wgEncodeUwTfbsRptecCtcfStdAlnRep1.sga RPTEC - CTCF - None - Rep1 CTCF -
164 wgEncodeUwTfbsRptecCtcfStdAlnRep2.sga RPTEC - CTCF - None - Rep2 CTCF -
165 wgEncodeUwTfbsRptecInputStdAlnRep1.sga RPTEC - Input - None - Rep1 Input -
166 wgEncodeUwTfbsSaecCtcfStdAlnRep1.sga SAEC - CTCF - None - Rep1 CTCF GSM749684
167 wgEncodeUwTfbsSaecCtcfStdAlnRep2.sga SAEC - CTCF - None - Rep2 CTCF GSM749779
168 wgEncodeUwTfbsSaecInputStdAlnRep1.sga SAEC - Input - None - Rep1 Input GSM749682
169 wgEncodeUwTfbsSknmcInputStdAlnRep1.sga SK-N-MC - Input - None - Rep1 Input -
170 wgEncodeUwTfbsSknshraCtcfStdAlnRep1.sga SK-N-SH_RA - CTCF - None - Rep1 CTCF GSM749693
171 wgEncodeUwTfbsSknshraCtcfStdAlnRep2.sga SK-N-SH_RA - CTCF - None - Rep2 CTCF GSM749667
172 wgEncodeUwTfbsSknshraInputStdAlnRep1.sga SK-N-SH_RA - Input - None - Rep1 Input GSM749700
173 wgEncodeUwTfbsSkmcInputStdAlnRep1.sga SKMC - Input - None - Rep1 Input -
174 wgEncodeUwTfbsWerirb1CtcfStdAlnRep1.sga WERI-Rb-1 - CTCF - None - Rep1 CTCF GSM749768
175 wgEncodeUwTfbsWerirb1CtcfStdAlnRep2.sga WERI-Rb-1 - CTCF - None - Rep2 CTCF GSM749679
176 wgEncodeUwTfbsWerirb1InputStdAlnRep1.sga WERI-Rb-1 - Input - None - Rep1 Input GSM749766
177 wgEncodeUwTfbsWi38CtcfStdAlnRep1.sga WI-38 - CTCF - None - Rep1 CTCF -
178 wgEncodeUwTfbsWi38CtcfStdAlnRep2.sga WI-38 - CTCF - None - Rep2 CTCF -
179 wgEncodeUwTfbsWi38InputOhtamStdAlnRep1.sga WI-38 - Input - 4OHTAM_20nM_72hr - Rep1 Input -
180 wgEncodeUwTfbsWi38InputStdAlnRep1.sga WI-38 - Input - None - Rep1 Input -

Peak Files [Human Feb. 2009 (GRCh37/hg19) Assembly]

Filename Description Feature GEO-ID
1 wgEncodeUwTfbsA549CtcfStdPkRep1_peak.sga A549 - CTCF - None - peaks CTCF_P GSM1022640
2 wgEncodeUwTfbsA549CtcfStdPkRep2_peak.sga A549 - CTCF - None - peaks CTCF_P GSM1022639
3 wgEncodeUwTfbsAg04449CtcfStdPkRep1_peak.sga AG04449 - CTCF - None - peaks CTCF_P GSM749695
4 wgEncodeUwTfbsAg04449CtcfStdPkRep2_peak.sga AG04449 - CTCF - None - peaks CTCF_P GSM749678
5 wgEncodeUwTfbsAg04450CtcfStdPkRep1_peak.sga AG04450 - CTCF - None - peaks CTCF_P GSM749769
6 wgEncodeUwTfbsAg04450CtcfStdPkRep2_peak.sga AG04450 - CTCF - None - peaks CTCF_P GSM1022635
7 wgEncodeUwTfbsAg09309CtcfStdPkRep1_peak.sga AG09309 - CTCF - None - peaks CTCF_P GSM749750
8 wgEncodeUwTfbsAg09309CtcfStdPkRep2_peak.sga AG09309 - CTCF - None - peaks CTCF_P GSM749680
9 wgEncodeUwTfbsAg09319CtcfStdPkRep1_peak.sga AG09319 - CTCF - None - peaks CTCF_P GSM749728
10 wgEncodeUwTfbsAg09319CtcfStdPkRep2_peak.sga AG09319 - CTCF - None - peaks CTCF_P GSM749723
11 wgEncodeUwTfbsAg10803CtcfStdPkRep1_peak.sga AG10803 - CTCF - None - peaks CTCF_P GSM749714
12 wgEncodeUwTfbsAg10803CtcfStdPkRep2_peak.sga AG10803 - CTCF - None - peaks CTCF_P GSM749759
13 wgEncodeUwTfbsAoafCtcfStdPkRep1_peak.sga AoAF - CTCF - None - peaks CTCF_P GSM749666
14 wgEncodeUwTfbsAoafCtcfStdPkRep2_peak.sga AoAF - CTCF - None - peaks CTCF_P GSM749736
15 wgEncodeUwTfbsBe2cCtcfStdPkRep1_peak.sga BE2_C - CTCF - None - peaks CTCF_P GSM1022653
16 wgEncodeUwTfbsBe2cCtcfStdPkRep2_peak.sga BE2_C - CTCF - None - peaks CTCF_P GSM1022650
17 wgEncodeUwTfbsBjCtcfStdPkRep1_peak.sga BJ - CTCF - None - peaks CTCF_P GSM749677
18 wgEncodeUwTfbsBjCtcfStdPkRep2_peak.sga BJ - CTCF - None - peaks CTCF_P GSM749752
19 wgEncodeUwTfbsCaco2CtcfStdPkRep1_peak.sga Caco-2 - CTCF - None - peaks CTCF_P GSM749748
20 wgEncodeUwTfbsCaco2CtcfStdPkRep2_peak.sga Caco-2 - CTCF - None - peaks CTCF_P GSM749689
21 wgEncodeUwTfbsGm06990CtcfStdPkRep1_peak.sga GM06990 - CTCF - None - peaks CTCF_P GSM749708
22 wgEncodeUwTfbsGm06990CtcfStdPkRep2_peak.sga GM06990 - CTCF - None - peaks CTCF_P GSM749705
23 wgEncodeUwTfbsGm12801CtcfStdPkRep1_peak.sga GM12801 - CTCF - None - peaks CTCF_P GSM749711
24 wgEncodeUwTfbsGm12864CtcfStdPkRep1_peak.sga GM12864 - CTCF - None - peaks CTCF_P GSM749676
25 wgEncodeUwTfbsGm12864CtcfStdPkRep2_peak.sga GM12864 - CTCF - None - peaks CTCF_P GSM749762
26 wgEncodeUwTfbsGm12864CtcfStdPkRep3_peak.sga GM12864 - CTCF - None - peaks CTCF_P GSM1022664
27 wgEncodeUwTfbsGm12865CtcfStdPkRep1_peak.sga GM12865 - CTCF - None - peaks CTCF_P GSM749740
28 wgEncodeUwTfbsGm12865CtcfStdPkRep2_peak.sga GM12865 - CTCF - None - peaks CTCF_P GSM749725
29 wgEncodeUwTfbsGm12865CtcfStdPkRep3_peak.sga GM12865 - CTCF - None - peaks CTCF_P GSM1022636
30 wgEncodeUwTfbsGm12866CtcfStdPkRep1_peak.sga GM12866 - CTCF - None - peaks CTCF_P GSM849305
31 wgEncodeUwTfbsGm12866CtcfStdPkRep2_peak.sga GM12866 - CTCF - None - peaks CTCF_P GSM849305
32 wgEncodeUwTfbsGm12867CtcfStdPkRep1_peak.sga GM12867 - CTCF - None - peaks CTCF_P GSM849301
33 wgEncodeUwTfbsGm12867CtcfStdPkRep2_peak.sga GM12867 - CTCF - None - peaks CTCF_P GSM849301
34 wgEncodeUwTfbsGm12868CtcfStdPkRep1_peak.sga GM12868 - CTCF - None - peaks CTCF_P GSM849300
35 wgEncodeUwTfbsGm12868CtcfStdPkRep2_peak.sga GM12868 - CTCF - None - peaks CTCF_P GSM849300
36 wgEncodeUwTfbsGm12869CtcfStdPkRep1_peak.sga GM12869 - CTCF - None - peaks CTCF_P GSM849303
37 wgEncodeUwTfbsGm12869CtcfStdPkRep2_peak.sga GM12869 - CTCF - None - peaks CTCF_P GSM849303
38 wgEncodeUwTfbsGm12870CtcfStdPkRep1_peak.sga GM12870 - CTCF - None - peaks CTCF_P GSM849302
39 wgEncodeUwTfbsGm12870CtcfStdPkRep2_peak.sga GM12870 - CTCF - None - peaks CTCF_P GSM849302
40 wgEncodeUwTfbsGm12871CtcfStdPkRep1_peak.sga GM12871 - CTCF - None - peaks CTCF_P GSM849304
41 wgEncodeUwTfbsGm12871CtcfStdPkRep2_peak.sga GM12871 - CTCF - None - peaks CTCF_P GSM849304
42 wgEncodeUwTfbsGm12872CtcfStdPkRep1_peak.sga GM12872 - CTCF - None - peaks CTCF_P GSM749694
43 wgEncodeUwTfbsGm12872CtcfStdPkRep2_peak.sga GM12872 - CTCF - None - peaks CTCF_P GSM749692
44 wgEncodeUwTfbsGm12872CtcfStdPkRep3_peak.sga GM12872 - CTCF - None - peaks CTCF_P GSM1022633
45 wgEncodeUwTfbsGm12873CtcfStdPkRep1_peak.sga GM12873 - CTCF - None - peaks CTCF_P GSM749730
46 wgEncodeUwTfbsGm12873CtcfStdPkRep2_peak.sga GM12873 - CTCF - None - peaks CTCF_P GSM749686
47 wgEncodeUwTfbsGm12873CtcfStdPkRep3_peak.sga GM12873 - CTCF - None - peaks CTCF_P GSM1022629
48 wgEncodeUwTfbsGm12874CtcfStdPkRep1_peak.sga GM12874 - CTCF - None - peaks CTCF_P GSM749757
49 wgEncodeUwTfbsGm12874CtcfStdPkRep2_peak.sga GM12874 - CTCF - None - peaks CTCF_P GSM749741
50 wgEncodeUwTfbsGm12875CtcfStdPkRep1_peak.sga GM12875 - CTCF - None - peaks CTCF_P GSM749764
51 wgEncodeUwTfbsGm12875CtcfStdPkRep2_peak.sga GM12875 - CTCF - None - peaks CTCF_P GSM749670
52 wgEncodeUwTfbsGm12878CtcfStdPkRep1_peak.sga GM12878 - CTCF - None - peaks CTCF_P GSM749704
53 wgEncodeUwTfbsGm12878CtcfStdPkRep2_peak.sga GM12878 - CTCF - None - peaks CTCF_P GSM749706
54 wgEncodeUwTfbsHaspCtcfStdPkRep1_peak.sga HA-sp - CTCF - None - peaks CTCF_P GSM749696
55 wgEncodeUwTfbsHaspCtcfStdPkRep2_peak.sga HA-sp - CTCF - None - peaks CTCF_P GSM1022668
56 wgEncodeUwTfbsHacCtcfStdPkRep1_peak.sga HAc - CTCF - None - peaks CTCF_P GSM1022661
57 wgEncodeUwTfbsHacCtcfStdPkRep2_peak.sga HAc - CTCF - None - peaks CTCF_P GSM1022662
58 wgEncodeUwTfbsHbmecCtcfStdPkRep1_peak.sga HBMEC - CTCF - None - peaks CTCF_P GSM749743
59 wgEncodeUwTfbsHbmecCtcfStdPkRep2_peak.sga HBMEC - CTCF - None - peaks CTCF_P GSM749710
60 wgEncodeUwTfbsHcfaaCtcfStdPkRep1_peak.sga HCFaa - CTCF - None - peaks CTCF_P GSM749732
61 wgEncodeUwTfbsHcmCtcfStdPkRep1_peak.sga HCM - CTCF - None - peaks CTCF_P GSM1022657
62 wgEncodeUwTfbsHcmCtcfStdPkRep2_peak.sga HCM - CTCF - None - peaks CTCF_P GSM1022677
63 wgEncodeUwTfbsHcpeCtcfStdPkRep1_peak.sga HCPEpiC - CTCF - None - peaks CTCF_P GSM749735
64 wgEncodeUwTfbsHcpeCtcfStdPkRep2_peak.sga HCPEpiC - CTCF - None - peaks CTCF_P GSM749745
65 wgEncodeUwTfbsHct116CtcfStdPkRep1_peak.sga HCT-116 - CTCF - None - peaks CTCF_P GSM1022652
66 wgEncodeUwTfbsHct116CtcfStdPkRep2_peak.sga HCT-116 - CTCF - None - peaks CTCF_P GSM1022651
67 wgEncodeUwTfbsHeeCtcfStdPkRep1_peak.sga HEEpiC - CTCF - None - peaks CTCF_P GSM749712
68 wgEncodeUwTfbsHeeCtcfStdPkRep2_peak.sga HEEpiC - CTCF - None - peaks CTCF_P GSM749726
69 wgEncodeUwTfbsHek293CtcfStdPkRep1_peak.sga HEK293 - CTCF - None - peaks CTCF_P GSM749668
70 wgEncodeUwTfbsHek293CtcfStdPkRep2_peak.sga HEK293 - CTCF - None - peaks CTCF_P GSM749687
71 wgEncodeUwTfbsHffCtcfStdPkRep1_peak.sga HFF - CTCF - None - peaks CTCF_P GSM1022644
72 wgEncodeUwTfbsHffmycCtcfStdPkRep1_peak.sga HFF-Myc - CTCF - None - peaks CTCF_P GSM1022671
73 wgEncodeUwTfbsHffmycCtcfStdPkRep2_peak.sga HFF-Myc - CTCF - None - peaks CTCF_P GSM1022669
74 wgEncodeUwTfbsHl60CtcfStdPkRep1_peak.sga HL-60 - CTCF - None - peaks CTCF_P GSM749688
75 wgEncodeUwTfbsHmecCtcfStdPkRep1_peak.sga HMEC - CTCF - None - peaks CTCF_P GSM749753
76 wgEncodeUwTfbsHmecCtcfStdPkRep2_peak.sga HMEC - CTCF - None - peaks CTCF_P GSM1022631
77 wgEncodeUwTfbsHmfCtcfStdPkRep1_peak.sga HMF - CTCF - None - peaks CTCF_P GSM749665
78 wgEncodeUwTfbsHmfCtcfStdPkRep2_peak.sga HMF - CTCF - None - peaks CTCF_P GSM749675
79 wgEncodeUwTfbsHpafCtcfStdPkRep1_peak.sga HPAF - CTCF - None - peaks CTCF_P GSM749681
80 wgEncodeUwTfbsHpafCtcfStdPkRep2_peak.sga HPAF - CTCF - None - peaks CTCF_P GSM749751
81 wgEncodeUwTfbsHpfCtcfStdPkRep1_peak.sga HPF - CTCF - None - peaks CTCF_P GSM749699
82 wgEncodeUwTfbsHpfCtcfStdPkRep2_peak.sga HPF - CTCF - None - peaks CTCF_P GSM749717
83 wgEncodeUwTfbsHreCtcfStdPkRep1_peak.sga HRE - CTCF - None - peaks CTCF_P GSM749727
84 wgEncodeUwTfbsHreCtcfStdPkRep2_peak.sga HRE - CTCF - None - peaks CTCF_P GSM749737
85 wgEncodeUwTfbsHrpeCtcfStdPkRep1_peak.sga HRPEpiC - CTCF - None - peaks CTCF_P GSM749673
86 wgEncodeUwTfbsHrpeCtcfStdPkRep2_peak.sga HRPEpiC - CTCF - None - peaks CTCF_P GSM1022665
87 wgEncodeUwTfbsHuvecCtcfStdPkRep1_peak.sga HUVEC - CTCF - None - peaks CTCF_P GSM749674
88 wgEncodeUwTfbsHuvecCtcfStdPkRep2_peak.sga HUVEC - CTCF - None - peaks CTCF_P GSM749749
89 wgEncodeUwTfbsHvmfCtcfStdPkRep1_peak.sga HVMF - CTCF - None - peaks CTCF_P GSM1022630
90 wgEncodeUwTfbsHvmfCtcfStdPkRep2_peak.sga HVMF - CTCF - None - peaks CTCF_P GSM1022628
91 wgEncodeUwTfbsHelas3CtcfStdPkRep1_peak.sga HeLa-S3 - CTCF - None - peaks CTCF_P GSM749729
92 wgEncodeUwTfbsHelas3CtcfStdPkRep2_peak.sga HeLa-S3 - CTCF - None - peaks CTCF_P GSM749739
93 wgEncodeUwTfbsHepg2CtcfStdPkRep1_peak.sga HepG2 - CTCF - None - peaks CTCF_P GSM749715
94 wgEncodeUwTfbsHepg2CtcfStdPkRep2_peak.sga HepG2 - CTCF - None - peaks CTCF_P GSM749683
95 wgEncodeUwTfbsK562CtcfStdPkRep1_peak.sga K562 - CTCF - None - peaks CTCF_P GSM749690
96 wgEncodeUwTfbsK562CtcfStdPkRep2_peak.sga K562 - CTCF - None - peaks CTCF_P GSM749733
97 wgEncodeUwTfbsMcf7CtcfStdPkRep1_peak.sga MCF-7 - CTCF - None - peaks CTCF_P GSM1022658
98 wgEncodeUwTfbsMcf7CtcfStdPkRep2_peak.sga MCF-7 - CTCF - None - peaks CTCF_P GSM1022663
99 wgEncodeUwTfbsNb4CtcfStdPkRep1_peak.sga NB4 - CTCF - None - peaks CTCF_P GSM1022643
100 wgEncodeUwTfbsNhdfneoCtcfStdPkRep1_peak.sga NHDF-neo - CTCF - None - peaks CTCF_P GSM1022675
101 wgEncodeUwTfbsNhdfneoCtcfStdPkRep2_peak.sga NHDF-neo - CTCF - None - peaks CTCF_P GSM1022676
102 wgEncodeUwTfbsNhekCtcfStdPkRep1_peak.sga NHEK - CTCF - None - peaks CTCF_P GSM749707
103 wgEncodeUwTfbsNhekCtcfStdPkRep2_peak.sga NHEK - CTCF - None - peaks CTCF_P GSM749747
104 wgEncodeUwTfbsNhlfCtcfStdPkRep1_peak.sga NHLF - CTCF - None - peaks CTCF_P GSM1022626
105 wgEncodeUwTfbsRptecCtcfStdPkRep1_peak.sga RPTEC - CTCF - None - peaks CTCF_P GSM1022667
106 wgEncodeUwTfbsRptecCtcfStdPkRep2_peak.sga RPTEC - CTCF - None - peaks CTCF_P GSM1022666
107 wgEncodeUwTfbsSaecCtcfStdPkRep1_peak.sga SAEC - CTCF - None - peaks CTCF_P GSM749684
108 wgEncodeUwTfbsSaecCtcfStdPkRep2_peak.sga SAEC - CTCF - None - peaks CTCF_P GSM749779
109 wgEncodeUwTfbsSknshraCtcfStdPkRep1_peak.sga SK-N-SH_RA - CTCF - None - peaks CTCF_P GSM749693
110 wgEncodeUwTfbsSknshraCtcfStdPkRep2_peak.sga SK-N-SH_RA - CTCF - None - peaks CTCF_P GSM749667
111 wgEncodeUwTfbsWerirb1CtcfStdPkRep1_peak.sga WERI-Rb-1 - CTCF - None - peaks CTCF_P GSM749768
112 wgEncodeUwTfbsWerirb1CtcfStdPkRep2_peak.sga WERI-Rb-1 - CTCF - None - peaks CTCF_P GSM749679
113 wgEncodeUwTfbsWi38CtcfStdPkRep1_peak.sga WI-38 - CTCF - None - peaks CTCF_P GSM1022637
114 wgEncodeUwTfbsWi38CtcfStdPkRep2_peak.sga WI-38 - CTCF - None - peaks CTCF_P GSM1022634

Technical Notes

BAM and narrowPeak files were downloaded from UCSC and converted in sga format using bamToBed (SamTools) and bed2sga (ChIP-seq).

References


  1. Wang H, Maurano MT, Qu H, Varley KE, Gertz J, Pauli F, Lee K, Canfield T, Weaver M, Sandstrom R, Thurman RE, Kaul R, Myers RM, Stamatoyannopoulos JA. Widespread plasticity in CTCF occupancy linked to DNA methylation.
    Genome Res. 2012 Sep;22(9):1680-8.
    PMID: 22955980

  2. GEO series GSE30263 CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington