Wang et al. 2012, CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington.

Description

This samples serie displays maps of genome-wide binding of the CTCF transcription factor in different cell lines and different conditions. Additional peak files are also provided.

Source

Samples

From H. sapiens (Feb 2009 GRCh37/hg19).

ChIP-seq data:

Filename Description Feature GEO-ID
1 wgEncodeUwTfbsA549CtcfStdAlnRep1.sga A549 - CTCF - Rep1 CTCF -
2 wgEncodeUwTfbsA549CtcfStdAlnRep2.sga A549 - CTCF - Rep2 CTCF -
3 wgEncodeUwTfbsA549InputStdAlnRep1.sga A549 - Input - Rep1 Input -
4 wgEncodeUwTfbsAg04449CtcfStdAlnRep1.sga AG04449 - CTCF - Rep1 CTCF GSM749695
5 wgEncodeUwTfbsAg04449CtcfStdAlnRep2.sga AG04449 - CTCF - Rep2 CTCF GSM749678
6 wgEncodeUwTfbsAg04449InputStdAlnRep1.sga AG04449 - Input - Rep1 Input GSM749702
7 wgEncodeUwTfbsAg04450CtcfStdAlnRep1.sga AG04450 - CTCF - Rep1 CTCF GSM749769
8 wgEncodeUwTfbsAg04450CtcfStdAlnRep2.sga AG04450 - CTCF - Rep2 CTCF -
9 wgEncodeUwTfbsAg04450InputStdAlnRep1.sga AG04450 - Input - Rep1 Input GSM749697
10 wgEncodeUwTfbsAg09309CtcfStdAlnRep1.sga AG09309 - CTCF - Rep1 CTCF GSM749750
11 wgEncodeUwTfbsAg09309CtcfStdAlnRep2.sga AG09309 - CTCF - Rep2 CTCF GSM749680
12 wgEncodeUwTfbsAg09309InputStdAlnRep1.sga AG09309 - Input - Rep1 Input GSM749718
13 wgEncodeUwTfbsAg09319CtcfStdAlnRep1.sga AG09319 - CTCF - Rep1 CTCF GSM749728
14 wgEncodeUwTfbsAg09319CtcfStdAlnRep2.sga AG09319 - CTCF - Rep2 CTCF GSM749723
15 wgEncodeUwTfbsAg09319InputStdAlnRep1.sga AG09319 - Input - Rep1 Input GSM749671
16 wgEncodeUwTfbsAg10803CtcfStdAlnRep1.sga AG10803 - CTCF - Rep1 CTCF GSM749714
17 wgEncodeUwTfbsAg10803CtcfStdAlnRep2.sga AG10803 - CTCF - Rep2 CTCF GSM749759
18 wgEncodeUwTfbsAg10803InputStdAlnRep1.sga AG10803 - Input - Rep1 Input GSM749734
19 wgEncodeUwTfbsAoafCtcfStdAlnRep1.sga AoAF - CTCF - Rep1 CTCF GSM749666
20 wgEncodeUwTfbsAoafCtcfStdAlnRep2.sga AoAF - CTCF - Rep2 CTCF GSM749736
21 wgEncodeUwTfbsAoafInputStdAlnRep1.sga AoAF - Input - Rep1 Input GSM749772
22 wgEncodeUwTfbsBe2cCtcfStdAlnRep1.sga BE2_C - CTCF - Rep1 CTCF -
23 wgEncodeUwTfbsBe2cCtcfStdAlnRep2.sga BE2_C - CTCF - Rep2 CTCF -
24 wgEncodeUwTfbsBe2cInputStdAlnRep1.sga BE2_C - Input - Rep1 Input -
25 wgEncodeUwTfbsBjCtcfStdAlnRep1.sga BJ - CTCF - Rep1 CTCF GSM749677
26 wgEncodeUwTfbsBjCtcfStdAlnRep2.sga BJ - CTCF - Rep2 CTCF GSM749752
27 wgEncodeUwTfbsBjInputStdAlnRep1.sga BJ - Input - Rep1 Input GSM749770
28 wgEncodeUwTfbsCd20ro01778InputStdAlnRep1.sga CD20+_RO01778 - Input - Rep1 Input -
29 wgEncodeUwTfbsCd20ro01794InputStdAlnRep1.sga CD20+_RO01794 - Input - Rep1 Input -
30 wgEncodeUwTfbsCaco2CtcfStdAlnRep1.sga Caco-2 - CTCF - Rep1 CTCF GSM749748
31 wgEncodeUwTfbsCaco2CtcfStdAlnRep2.sga Caco-2 - CTCF - Rep2 CTCF GSM749689
32 wgEncodeUwTfbsCaco2InputStdAlnRep1.sga Caco-2 - Input - Rep1 Input GSM749691
33 wgEncodeUwTfbsGm06990CtcfStdAlnRep1.sga GM06990 - CTCF - Rep1 CTCF GSM749708
34 wgEncodeUwTfbsGm06990CtcfStdAlnRep2.sga GM06990 - CTCF - Rep2 CTCF GSM749705
35 wgEncodeUwTfbsGm06990InputStdAlnRep1.sga GM06990 - Input - Rep1 Input GSM749731
36 wgEncodeUwTfbsGm12801CtcfStdAlnRep1.sga GM12801 - CTCF - Rep1 CTCF GSM749711
37 wgEncodeUwTfbsGm12801InputStdAlnRep1.sga GM12801 - Input - Rep1 Input GSM749701
38 wgEncodeUwTfbsGm12864CtcfStdAlnRep1.sga GM12864 - CTCF - Rep1 CTCF GSM749676
39 wgEncodeUwTfbsGm12864CtcfStdAlnRep2.sga GM12864 - CTCF - Rep2 CTCF GSM749762
40 wgEncodeUwTfbsGm12864CtcfStdAlnRep3.sga GM12864 - CTCF - Rep3 CTCF -
41 wgEncodeUwTfbsGm12864InputStdAlnRep1.sga GM12864 - Input - Rep1 Input GSM749754
42 wgEncodeUwTfbsGm12865CtcfStdAlnRep1.sga GM12865 - CTCF - Rep1 CTCF GSM749740
43 wgEncodeUwTfbsGm12865CtcfStdAlnRep2.sga GM12865 - CTCF - Rep2 CTCF GSM749725
44 wgEncodeUwTfbsGm12865CtcfStdAlnRep3.sga GM12865 - CTCF - Rep3 CTCF -
45 wgEncodeUwTfbsGm12865InputStdAlnRep1.sga GM12865 - Input - Rep1 Input GSM749777
46 wgEncodeUwTfbsGm12866CtcfStdAlnRep1.sga GM12866 - CTCF - Rep1 CTCF -
47 wgEncodeUwTfbsGm12866CtcfStdAlnRep2.sga GM12866 - CTCF - Rep2 CTCF -
48 wgEncodeUwTfbsGm12867CtcfStdAlnRep1.sga GM12867 - CTCF - Rep1 CTCF -
49 wgEncodeUwTfbsGm12867CtcfStdAlnRep2.sga GM12867 - CTCF - Rep2 CTCF -
50 wgEncodeUwTfbsGm12868CtcfStdAlnRep1.sga GM12868 - CTCF - Rep1 CTCF -
51 wgEncodeUwTfbsGm12868CtcfStdAlnRep2.sga GM12868 - CTCF - Rep2 CTCF -
52 wgEncodeUwTfbsGm12869CtcfStdAlnRep1.sga GM12869 - CTCF - Rep1 CTCF -
53 wgEncodeUwTfbsGm12869CtcfStdAlnRep2.sga GM12869 - CTCF - Rep2 CTCF -
54 wgEncodeUwTfbsGm12870CtcfStdAlnRep1.sga GM12870 - CTCF - Rep1 CTCF -
55 wgEncodeUwTfbsGm12870CtcfStdAlnRep2.sga GM12870 - CTCF - Rep2 CTCF -
56 wgEncodeUwTfbsGm12871CtcfStdAlnRep1.sga GM12871 - CTCF - Rep1 CTCF -
57 wgEncodeUwTfbsGm12871CtcfStdAlnRep2.sga GM12871 - CTCF - Rep2 CTCF -
58 wgEncodeUwTfbsGm12872CtcfStdAlnRep1.sga GM12872 - CTCF - Rep1 CTCF GSM749694
59 wgEncodeUwTfbsGm12872CtcfStdAlnRep2.sga GM12872 - CTCF - Rep2 CTCF GSM749692
60 wgEncodeUwTfbsGm12872CtcfStdAlnRep3.sga GM12872 - CTCF - Rep3 CTCF -
61 wgEncodeUwTfbsGm12872InputStdAlnRep1.sga GM12872 - Input - Rep1 Input GSM749765
62 wgEncodeUwTfbsGm12873CtcfStdAlnRep1.sga GM12873 - CTCF - Rep1 CTCF GSM749730
63 wgEncodeUwTfbsGm12873CtcfStdAlnRep2.sga GM12873 - CTCF - Rep2 CTCF GSM749686
64 wgEncodeUwTfbsGm12873CtcfStdAlnRep3.sga GM12873 - CTCF - Rep3 CTCF -
65 wgEncodeUwTfbsGm12873InputStdAlnRep1.sga GM12873 - Input - Rep1 Input GSM749685
66 wgEncodeUwTfbsGm12874CtcfStdAlnRep1.sga GM12874 - CTCF - Rep1 CTCF GSM749757
67 wgEncodeUwTfbsGm12874CtcfStdAlnRep2.sga GM12874 - CTCF - Rep2 CTCF GSM749741
68 wgEncodeUwTfbsGm12874InputStdAlnRep1.sga GM12874 - Input - Rep1 Input GSM749742
69 wgEncodeUwTfbsGm12875CtcfStdAlnRep1.sga GM12875 - CTCF - Rep1 CTCF GSM749764
70 wgEncodeUwTfbsGm12875CtcfStdAlnRep2.sga GM12875 - CTCF - Rep2 CTCF GSM749670
71 wgEncodeUwTfbsGm12875InputStdAlnRep1.sga GM12875 - Input - Rep1 Input GSM749724
72 wgEncodeUwTfbsGm12878CtcfStdAlnRep1.sga GM12878 - CTCF - Rep1 CTCF GSM749704
73 wgEncodeUwTfbsGm12878CtcfStdAlnRep2.sga GM12878 - CTCF - Rep2 CTCF GSM749706
74 wgEncodeUwTfbsGm12878InputStdAlnRep1.sga GM12878 - Input - Rep1 Input GSM749669
75 wgEncodeUwTfbsH7esInputStdAlnRep1.sga H7-hESC - Input - diffProtA_14d - Rep1 Input -
76 wgEncodeUwTfbsH7esInputStdDiffa2dAlnRep1.sga H7-hESC - Input - diffProtA_2d - Rep1 Input -
77 wgEncodeUwTfbsH7esInputStdDiffa5dAlnRep1.sga H7-hESC - Input - diffProtA_5d - Rep1 Input -
78 wgEncodeUwTfbsH7esInputStdDiffa9dAlnRep1.sga H7-hESC - Input - diffProtA_9d - Rep1 Input -
79 wgEncodeUwTfbsHaspCtcfStdAlnRep1.sga HA-sp - CTCF - Rep1 CTCF GSM749696
80 wgEncodeUwTfbsHaspCtcfStdAlnRep2.sga HA-sp - CTCF - Rep2 CTCF -
81 wgEncodeUwTfbsHaspInputStdAlnRep1.sga HA-sp - Input - Rep1 Input GSM749720
82 wgEncodeUwTfbsHacCtcfStdAlnRep1.sga HAc - CTCF - Rep1 CTCF -
83 wgEncodeUwTfbsHacCtcfStdAlnRep2.sga HAc - CTCF - Rep2 CTCF -
84 wgEncodeUwTfbsHacInputStdAlnRep1.sga HAc - Input - Rep1 Input -
85 wgEncodeUwTfbsHbmecCtcfStdAlnRep1.sga HBMEC - CTCF - Rep1 CTCF GSM749743
86 wgEncodeUwTfbsHbmecCtcfStdAlnRep2.sga HBMEC - CTCF - Rep2 CTCF GSM749710
87 wgEncodeUwTfbsHbmecInputStdAlnRep1.sga HBMEC - Input - Rep1 Input GSM749746
88 wgEncodeUwTfbsHcfInputStdAlnRep1.sga HCF - Input - Rep1 Input GSM749713
89 wgEncodeUwTfbsHcfaaCtcfStdAlnRep1.sga HCFaa - CTCF - Rep1 CTCF GSM749732
90 wgEncodeUwTfbsHcfaaInputStdAlnRep1.sga HCFaa - Input - Rep1 Input GSM749761
91 wgEncodeUwTfbsHcmCtcfStdAlnRep1.sga HCM - CTCF - Rep1 CTCF -
92 wgEncodeUwTfbsHcmCtcfStdAlnRep2.sga HCM - CTCF - Rep2 CTCF -
93 wgEncodeUwTfbsHcmInputStdAlnRep1.sga HCM - Input - Rep1 Input GSM749738
94 wgEncodeUwTfbsHcpeCtcfStdAlnRep1.sga HCPEpiC - CTCF - Rep1 CTCF GSM749735
95 wgEncodeUwTfbsHcpeCtcfStdAlnRep2.sga HCPEpiC - CTCF - Rep2 CTCF GSM749745
96 wgEncodeUwTfbsHcpeInputStdAlnRep1.sga HCPEpiC - Input - Rep1 Input GSM749776
97 wgEncodeUwTfbsHct116CtcfStdAlnRep1.sga HCT-116 - CTCF - Rep1 CTCF -
98 wgEncodeUwTfbsHct116CtcfStdAlnRep2.sga HCT-116 - CTCF - Rep2 CTCF -
99 wgEncodeUwTfbsHct116InputStdAlnRep1.sga HCT-116 - Input - Rep1 Input GSM749774
100 wgEncodeUwTfbsHeeCtcfStdAlnRep1.sga HEEpiC - CTCF - Rep1 CTCF GSM749712
101 wgEncodeUwTfbsHeeCtcfStdAlnRep2.sga HEEpiC - CTCF - Rep2 CTCF GSM749726
102 wgEncodeUwTfbsHeeInputStdAlnRep1.sga HEEpiC - Input - Rep1 Input GSM749698
103 wgEncodeUwTfbsHek293CtcfStdAlnRep1.sga HEK293 - CTCF - Rep1 CTCF GSM749668
104 wgEncodeUwTfbsHek293CtcfStdAlnRep2.sga HEK293 - CTCF - Rep2 CTCF GSM749687
105 wgEncodeUwTfbsHek293InputStdAlnRep1.sga HEK293 - Input - Rep1 Input GSM749767
106 wgEncodeUwTfbsHffCtcfStdAlnRep1.sga HFF - CTCF - Rep1 CTCF -
107 wgEncodeUwTfbsHffInputStdAlnRep1.sga HFF - Input - Rep1 Input -
108 wgEncodeUwTfbsHffmycCtcfStdAlnRep1.sga HFF-Myc - CTCF - Rep1 CTCF -
109 wgEncodeUwTfbsHffmycCtcfStdAlnRep2.sga HFF-Myc - CTCF - Rep2 CTCF -
110 wgEncodeUwTfbsHffmycInputStdAlnRep1.sga HFF-Myc - Input - Rep1 Input -
111 wgEncodeUwTfbsHl60CtcfStdAlnRep1.sga HL-60 - CTCF - Rep1 CTCF GSM749688
112 wgEncodeUwTfbsHl60InputStdAlnRep1.sga HL-60 - Input - Rep1 Input GSM749775
113 wgEncodeUwTfbsHmecCtcfStdAlnRep1.sga HMEC - CTCF - Rep1 CTCF GSM749753
114 wgEncodeUwTfbsHmecCtcfStdAlnRep2.sga HMEC - CTCF - Rep2 CTCF -
115 wgEncodeUwTfbsHmecInputStdAlnRep1.sga HMEC - Input - Rep1 Input GSM749755
116 wgEncodeUwTfbsHmfCtcfStdAlnRep1.sga HMF - CTCF - Rep1 CTCF GSM749665
117 wgEncodeUwTfbsHmfCtcfStdAlnRep2.sga HMF - CTCF - Rep2 CTCF GSM749675
118 wgEncodeUwTfbsHmfInputStdAlnRep1.sga HMF - Input - Rep1 Input GSM749763
119 wgEncodeUwTfbsHpafCtcfStdAlnRep1.sga HPAF - CTCF - Rep1 CTCF GSM749681
120 wgEncodeUwTfbsHpafCtcfStdAlnRep2.sga HPAF - CTCF - Rep2 CTCF GSM749751
121 wgEncodeUwTfbsHpafInputStdAlnRep1.sga HPAF - Input - Rep1 Input GSM749709
122 wgEncodeUwTfbsHpfCtcfStdAlnRep1.sga HPF - CTCF - Rep1 CTCF GSM749699
123 wgEncodeUwTfbsHpfCtcfStdAlnRep2.sga HPF - CTCF - Rep2 CTCF GSM749717
124 wgEncodeUwTfbsHpfInputStdAlnRep1.sga HPF - Input - Rep1 Input GSM749773
125 wgEncodeUwTfbsHreCtcfStdAlnRep1.sga HRE - CTCF - Rep1 CTCF GSM749727
126 wgEncodeUwTfbsHreCtcfStdAlnRep2.sga HRE - CTCF - Rep2 CTCF GSM749737
127 wgEncodeUwTfbsHreInputStdAlnRep1.sga HRE - Input - Rep1 Input GSM749778
128 wgEncodeUwTfbsHrpeCtcfStdAlnRep1.sga HRPEpiC - CTCF - Rep1 CTCF GSM749673
129 wgEncodeUwTfbsHrpeCtcfStdAlnRep2.sga HRPEpiC - CTCF - Rep2 CTCF -
130 wgEncodeUwTfbsHrpeInputStdAlnRep1.sga HRPEpiC - Input - Rep1 Input GSM749771
131 wgEncodeUwTfbsHuvecCtcfStdAlnRep1.sga HUVEC - CTCF - Rep1 CTCF GSM749674
132 wgEncodeUwTfbsHuvecCtcfStdAlnRep2.sga HUVEC - CTCF - Rep2 CTCF GSM749749
133 wgEncodeUwTfbsHuvecInputStdAlnRep1.sga HUVEC - Input - Rep1 Input GSM749758
134 wgEncodeUwTfbsHvmfCtcfStdAlnRep1.sga HVMF - CTCF - Rep1 CTCF -
135 wgEncodeUwTfbsHvmfCtcfStdAlnRep2.sga HVMF - CTCF - Rep2 CTCF -
136 wgEncodeUwTfbsHvmfInputStdAlnRep1.sga HVMF - Input - Rep1 Input GSM749703
137 wgEncodeUwTfbsHelas3CtcfStdAlnRep1.sga HeLa-S3 - CTCF - Rep1 CTCF GSM749729
138 wgEncodeUwTfbsHelas3CtcfStdAlnRep2.sga HeLa-S3 - CTCF - Rep2 CTCF GSM749739
139 wgEncodeUwTfbsHelas3InputStdAlnRep1.sga HeLa-S3 - Input - Rep1 Input GSM749721
140 wgEncodeUwTfbsHepg2CtcfStdAlnRep1.sga HepG2 - CTCF - Rep1 CTCF GSM749715
141 wgEncodeUwTfbsHepg2CtcfStdAlnRep2.sga HepG2 - CTCF - Rep2 CTCF GSM749683
142 wgEncodeUwTfbsHepg2InputStdAlnRep1.sga HepG2 - Input - Rep1 Input GSM749756
143 wgEncodeUwTfbsJurkatInputStdAlnRep1.sga Jurkat - Input - Rep1 Input GSM749672
144 wgEncodeUwTfbsK562CtcfStdAlnRep1.sga K562 - CTCF - Rep1 CTCF GSM749690
145 wgEncodeUwTfbsK562CtcfStdAlnRep2.sga K562 - CTCF - Rep2 CTCF GSM749733
146 wgEncodeUwTfbsK562InputStdAlnRep1.sga K562 - Input - Rep1 Input GSM749719
147 wgEncodeUwTfbsLncapInputStdAlnRep1.sga LNCaP - Input - Rep1 Input -
148 wgEncodeUwTfbsMcf7CtcfStdAlnRep1.sga MCF-7 - CTCF - Rep1 CTCF -
149 wgEncodeUwTfbsMcf7CtcfStdAlnRep2.sga MCF-7 - CTCF - Rep2 CTCF -
150 wgEncodeUwTfbsMcf7InputStdAlnRep1.sga MCF-7 - Input - Rep1 Input GSM749760
151 wgEncodeUwTfbsMonocd14ro1746InputStdAlnRep1.sga Monocytes-CD14+_RO01746 - Input - Rep1 Input -
152 wgEncodeUwTfbsNb4CtcfStdAlnRep1.sga NB4 - CTCF - Rep1 CTCF -
153 wgEncodeUwTfbsNb4InputStdAlnRep1.sga NB4 - Input - Rep1 Input GSM749716
154 wgEncodeUwTfbsNhdfneoCtcfStdAlnRep1.sga NHDF-neo - CTCF - Rep1 CTCF -
155 wgEncodeUwTfbsNhdfneoCtcfStdAlnRep2.sga NHDF-neo - CTCF - Rep2 CTCF -
156 wgEncodeUwTfbsNhdfneoInputStdAlnRep1.sga NHDF-neo - Input - Rep1 Input GSM749722
157 wgEncodeUwTfbsNhekCtcfStdAlnRep1.sga NHEK - CTCF - Rep1 CTCF GSM749707
158 wgEncodeUwTfbsNhekCtcfStdAlnRep2.sga NHEK - CTCF - Rep2 CTCF GSM749747
159 wgEncodeUwTfbsNhekInputStdAlnRep1.sga NHEK - Input - Rep1 Input GSM749744
160 wgEncodeUwTfbsNhlfCtcfStdAlnRep1.sga NHLF - CTCF - Rep1 CTCF -
161 wgEncodeUwTfbsNhlfInputStdAlnRep1.sga NHLF - Input - Rep1 Input -
162 wgEncodeUwTfbsPanc1InputStdAlnRep1.sga PANC-1 - Input - Rep1 Input -
163 wgEncodeUwTfbsRptecCtcfStdAlnRep1.sga RPTEC - CTCF - Rep1 CTCF -
164 wgEncodeUwTfbsRptecCtcfStdAlnRep2.sga RPTEC - CTCF - Rep2 CTCF -
165 wgEncodeUwTfbsRptecInputStdAlnRep1.sga RPTEC - Input - Rep1 Input -
166 wgEncodeUwTfbsSaecCtcfStdAlnRep1.sga SAEC - CTCF - Rep1 CTCF GSM749684
167 wgEncodeUwTfbsSaecCtcfStdAlnRep2.sga SAEC - CTCF - Rep2 CTCF GSM749779
168 wgEncodeUwTfbsSaecInputStdAlnRep1.sga SAEC - Input - Rep1 Input GSM749682
169 wgEncodeUwTfbsSknmcInputStdAlnRep1.sga SK-N-MC - Input - Rep1 Input -
170 wgEncodeUwTfbsSknshraCtcfStdAlnRep1.sga SK-N-SH_RA - CTCF - Rep1 CTCF GSM749693
171 wgEncodeUwTfbsSknshraCtcfStdAlnRep2.sga SK-N-SH_RA - CTCF - Rep2 CTCF GSM749667
172 wgEncodeUwTfbsSknshraInputStdAlnRep1.sga SK-N-SH_RA - Input - Rep1 Input GSM749700
173 wgEncodeUwTfbsSkmcInputStdAlnRep1.sga SKMC - Input - Rep1 Input -
174 wgEncodeUwTfbsWerirb1CtcfStdAlnRep1.sga WERI-Rb-1 - CTCF - Rep1 CTCF GSM749768
175 wgEncodeUwTfbsWerirb1CtcfStdAlnRep2.sga WERI-Rb-1 - CTCF - Rep2 CTCF GSM749679
176 wgEncodeUwTfbsWerirb1InputStdAlnRep1.sga WERI-Rb-1 - Input - Rep1 Input GSM749766
177 wgEncodeUwTfbsWi38CtcfStdAlnRep1.sga WI-38 - CTCF - Rep1 CTCF -
178 wgEncodeUwTfbsWi38CtcfStdAlnRep2.sga WI-38 - CTCF - Rep2 CTCF -
179 wgEncodeUwTfbsWi38InputOhtamStdAlnRep1.sga WI-38 - Input - 4OHTAM_20nM_72hr - Rep1 Input -
180 wgEncodeUwTfbsWi38InputStdAlnRep1.sga WI-38 - Input - Rep1 Input -

ChIP-seq peaks files:

Filename Description Feature GEO-ID
1 wgEncodeUwTfbsA549CtcfStdPkRep1_peak.sga A549 - CTCF - Rep1 - peaks CTCF_P GSM1022640
2 wgEncodeUwTfbsA549CtcfStdPkRep2_peak.sga A549 - CTCF - Rep2 - peaks CTCF_P GSM1022639
3 wgEncodeUwTfbsAg04449CtcfStdPkRep1_peak.sga AG04449 - CTCF - Rep1 - peaks CTCF_P GSM749695
4 wgEncodeUwTfbsAg04449CtcfStdPkRep2_peak.sga AG04449 - CTCF - Rep2 - peaks CTCF_P GSM749678
5 wgEncodeUwTfbsAg04450CtcfStdPkRep1_peak.sga AG04450 - CTCF - Rep1 - peaks CTCF_P GSM749769
6 wgEncodeUwTfbsAg04450CtcfStdPkRep2_peak.sga AG04450 - CTCF - Rep2 - peaks CTCF_P GSM1022635
7 wgEncodeUwTfbsAg09309CtcfStdPkRep1_peak.sga AG09309 - CTCF - Rep1 - peaks CTCF_P GSM749750
8 wgEncodeUwTfbsAg09309CtcfStdPkRep2_peak.sga AG09309 - CTCF - Rep2 - peaks CTCF_P GSM749680
9 wgEncodeUwTfbsAg09319CtcfStdPkRep2_peak.sga AG09319 - CTCF - Rep2 - peaks CTCF_P GSM749723
10 wgEncodeUwTfbsAg10803CtcfStdPkRep1_peak.sga AG10803 - CTCF - Rep1 - peaks CTCF_P GSM749714
11 wgEncodeUwTfbsAg10803CtcfStdPkRep2_peak.sga AG10803 - CTCF - Rep2 - peaks CTCF_P GSM749759
12 wgEncodeUwTfbsAoafCtcfStdPkRep1_peak.sga AoAF - CTCF - Rep1 - peaks CTCF_P GSM749666
13 wgEncodeUwTfbsAoafCtcfStdPkRep2_peak.sga AoAF - CTCF - Rep2 - peaks CTCF_P GSM749736
14 wgEncodeUwTfbsBe2cCtcfStdPkRep1_peak.sga BE2_C - CTCF - Rep1 - peaks CTCF_P GSM1022653
15 wgEncodeUwTfbsBe2cCtcfStdPkRep2_peak.sga BE2_C - CTCF - Rep2 - peaks CTCF_P GSM1022650
16 wgEncodeUwTfbsBjCtcfStdPkRep1_peak.sga BJ - CTCF - Rep1 - peaks CTCF_P GSM749677
17 wgEncodeUwTfbsBjCtcfStdPkRep2_peak.sga BJ - CTCF - Rep2 - peaks CTCF_P GSM749752
18 wgEncodeUwTfbsCaco2CtcfStdPkRep1_peak.sga Caco-2 - Rep1 CTCF_P GSM749748
19 wgEncodeUwTfbsCaco2CtcfStdPkRep2_peak.sga Caco-2 - Rep2 CTCF_P GSM749689
20 wgEncodeUwTfbsGm06990CtcfStdPkRep1_peak.sga GM06990 - CTCF - Rep1 - peaks CTCF_P GSM749708
21 wgEncodeUwTfbsGm06990CtcfStdPkRep2_peak.sga GM06990 - CTCF - Rep2 - peaks CTCF_P GSM749705
22 wgEncodeUwTfbsGm12801CtcfStdPkRep1_peak.sga GM12801 - CTCF - Rep1 - peaks CTCF_P GSM749711
23 wgEncodeUwTfbsGm12864CtcfStdPkRep1_peak.sga GM12864 - CTCF - Rep1 - peaks CTCF_P GSM749676
24 wgEncodeUwTfbsGm12864CtcfStdPkRep2_peak.sga GM12864 - CTCF - Rep2 - peaks CTCF_P GSM749762
25 wgEncodeUwTfbsGm12864CtcfStdPkRep3_peak.sga GM12864 - CTCF - Rep3 - peaks CTCF_P GSM1022664
26 wgEncodeUwTfbsGm12865CtcfStdPkRep1_peak.sga GM12865 - CTCF - Rep1 - peaks CTCF_P GSM749740
27 wgEncodeUwTfbsGm12865CtcfStdPkRep2_peak.sga GM12865 - CTCF - Rep2 - peaks CTCF_P GSM749725
28 wgEncodeUwTfbsGm12865CtcfStdPkRep3_peak.sga GM12865 - CTCF - Rep3 - peaks CTCF_P GSM1022636
29 wgEncodeUwTfbsGm12866CtcfStdPkRep1_peak.sga GM12866 - CTCF - Rep1 - peaks CTCF_P GSM849305
30 wgEncodeUwTfbsGm12866CtcfStdPkRep2_peak.sga GM12866 - CTCF - Rep2 - peaks CTCF_P GSM849305
31 wgEncodeUwTfbsGm12867CtcfStdPkRep1_peak.sga GM12867 - CTCF - Rep1 - peaks CTCF_P GSM849301
32 wgEncodeUwTfbsGm12867CtcfStdPkRep2_peak.sga GM12867 - CTCF - Rep2 - peaks CTCF_P GSM849301
33 wgEncodeUwTfbsGm12868CtcfStdPkRep1_peak.sga GM12868 - CTCF - Rep1 - peaks CTCF_P GSM849300
34 wgEncodeUwTfbsGm12868CtcfStdPkRep2_peak.sga GM12868 - CTCF - Rep2 - peaks CTCF_P GSM849300
35 wgEncodeUwTfbsGm12869CtcfStdPkRep1_peak.sga GM12869 - CTCF - Rep1 - peaks CTCF_P GSM849303
36 wgEncodeUwTfbsGm12869CtcfStdPkRep2_peak.sga GM12869 - CTCF - Rep2 - peaks CTCF_P GSM849303
37 wgEncodeUwTfbsGm12870CtcfStdPkRep1_peak.sga GM12870 - CTCF - Rep1 - peaks CTCF_P GSM849302
38 wgEncodeUwTfbsGm12870CtcfStdPkRep2_peak.sga GM12870 - CTCF - Rep2 - peaks CTCF_P GSM849302
39 wgEncodeUwTfbsGm12871CtcfStdPkRep1_peak.sga GM12871 - CTCF - Rep1 - peaks CTCF_P GSM849304
40 wgEncodeUwTfbsGm12871CtcfStdPkRep2_peak.sga GM12871 - CTCF - Rep2 - peaks CTCF_P GSM849304
41 wgEncodeUwTfbsGm12872CtcfStdPkRep1_peak.sga GM12872 - CTCF - Rep1 - peaks CTCF_P GSM749694
42 wgEncodeUwTfbsGm12872CtcfStdPkRep2_peak.sga GM12872 - CTCF - Rep2 - peaks CTCF_P GSM749692
43 wgEncodeUwTfbsGm12872CtcfStdPkRep3_peak.sga GM12872 - CTCF - Rep3 - peaks CTCF_P GSM1022633
44 wgEncodeUwTfbsGm12873CtcfStdPkRep1_peak.sga GM12873 - CTCF - Rep1 - peaks CTCF_P GSM749730
45 wgEncodeUwTfbsGm12873CtcfStdPkRep2_peak.sga GM12873 - CTCF - Rep2 - peaks CTCF_P GSM749686
46 wgEncodeUwTfbsGm12873CtcfStdPkRep3_peak.sga GM12873 - CTCF - Rep3 - peaks CTCF_P GSM1022629
47 wgEncodeUwTfbsGm12874CtcfStdPkRep1_peak.sga GM12874 - CTCF - Rep1 - peaks CTCF_P GSM749757
48 wgEncodeUwTfbsGm12874CtcfStdPkRep2_peak.sga GM12874 - CTCF - Rep2 - peaks CTCF_P GSM749741
49 wgEncodeUwTfbsGm12875CtcfStdPkRep1_peak.sga GM12875 - CTCF - Rep1 - peaks CTCF_P GSM749764
50 wgEncodeUwTfbsGm12875CtcfStdPkRep2_peak.sga GM12875 - CTCF - Rep2 - peaks CTCF_P GSM749670
51 wgEncodeUwTfbsGm12878CtcfStdPkRep1_peak.sga GM12878 - CTCF - Rep1 - peaks CTCF_P GSM749704
52 wgEncodeUwTfbsGm12878CtcfStdPkRep2_peak.sga GM12878 - CTCF - Rep2 - peaks CTCF_P GSM749706
53 wgEncodeUwTfbsHaspCtcfStdPkRep1_peak.sga HA-sp - Rep1 CTCF_P GSM749696
54 wgEncodeUwTfbsHaspCtcfStdPkRep2_peak.sga HA-sp - Rep2 CTCF_P GSM1022668
55 wgEncodeUwTfbsHacCtcfStdPkRep1_peak.sga HAc - CTCF - Rep1 - peaks CTCF_P GSM1022661
56 wgEncodeUwTfbsHacCtcfStdPkRep2_peak.sga HAc - CTCF - Rep2 - peaks CTCF_P GSM1022662
57 wgEncodeUwTfbsHbmecCtcfStdPkRep1_peak.sga HBMEC - CTCF - Rep1 - peaks CTCF_P GSM749743
58 wgEncodeUwTfbsHbmecCtcfStdPkRep2_peak.sga HBMEC - CTCF - Rep2 - peaks CTCF_P GSM749710
59 wgEncodeUwTfbsHcfaaCtcfStdPkRep1_peak.sga HCFaa - CTCF - Rep1 - peaks CTCF_P GSM749732
60 wgEncodeUwTfbsHcmCtcfStdPkRep1_peak.sga HCM - CTCF - Rep1 - peaks CTCF_P GSM1022657
61 wgEncodeUwTfbsHcmCtcfStdPkRep2_peak.sga HCM - CTCF - Rep2 - peaks CTCF_P GSM1022677
62 wgEncodeUwTfbsHcpeCtcfStdPkRep1_peak.sga HCPEpiC - CTCF - Rep1 - peaks CTCF_P GSM749735
63 wgEncodeUwTfbsHcpeCtcfStdPkRep2_peak.sga HCPEpiC - CTCF - Rep2 - peaks CTCF_P GSM749745
64 wgEncodeUwTfbsHct116CtcfStdPkRep1_peak.sga HCT-116 - Rep1 CTCF_P GSM1022652
65 wgEncodeUwTfbsHct116CtcfStdPkRep2_peak.sga HCT-116 - Rep2 CTCF_P GSM1022651
66 wgEncodeUwTfbsHeeCtcfStdPkRep1_peak.sga HEEpiC - CTCF - Rep1 - peaks CTCF_P GSM749712
67 wgEncodeUwTfbsHeeCtcfStdPkRep2_peak.sga HEEpiC - CTCF - Rep2 - peaks CTCF_P GSM749726
68 wgEncodeUwTfbsHek293CtcfStdPkRep1_peak.sga HEK293 - CTCF - Rep1 - peaks CTCF_P GSM749668
69 wgEncodeUwTfbsHek293CtcfStdPkRep2_peak.sga HEK293 - CTCF - Rep2 - peaks CTCF_P GSM749687
70 wgEncodeUwTfbsHffCtcfStdPkRep1_peak.sga HFF - CTCF - Rep1 - peaks CTCF_P GSM1022644
71 wgEncodeUwTfbsHffmycCtcfStdPkRep1_peak.sga HFF-Myc - Rep1 CTCF_P GSM1022671
72 wgEncodeUwTfbsHffmycCtcfStdPkRep2_peak.sga HFF-Myc - Rep2 CTCF_P GSM1022669
73 wgEncodeUwTfbsHl60CtcfStdPkRep1_peak.sga HL-60 - Rep1 CTCF_P GSM749688
74 wgEncodeUwTfbsHmecCtcfStdPkRep1_peak.sga HMEC - CTCF - Rep1 - peaks CTCF_P GSM749753
75 wgEncodeUwTfbsHmecCtcfStdPkRep2_peak.sga HMEC - CTCF - Rep2 - peaks CTCF_P GSM1022631
76 wgEncodeUwTfbsHmfCtcfStdPkRep1_peak.sga HMF - CTCF - Rep1 - peaks CTCF_P GSM749665
77 wgEncodeUwTfbsHmfCtcfStdPkRep2_peak.sga HMF - CTCF - Rep2 - peaks CTCF_P GSM749675
78 wgEncodeUwTfbsHpafCtcfStdPkRep1_peak.sga HPAF - CTCF - Rep1 - peaks CTCF_P GSM749681
79 wgEncodeUwTfbsHpafCtcfStdPkRep2_peak.sga HPAF - CTCF - Rep2 - peaks CTCF_P GSM749751
80 wgEncodeUwTfbsHpfCtcfStdPkRep1_peak.sga HPF - CTCF - Rep1 - peaks CTCF_P GSM749699
81 wgEncodeUwTfbsHpfCtcfStdPkRep2_peak.sga HPF - CTCF - Rep2 - peaks CTCF_P GSM749717
82 wgEncodeUwTfbsHreCtcfStdPkRep1_peak.sga HRE - CTCF - Rep1 - peaks CTCF_P GSM749727
83 wgEncodeUwTfbsHreCtcfStdPkRep2_peak.sga HRE - CTCF - Rep2 - peaks CTCF_P GSM749737
84 wgEncodeUwTfbsHrpeCtcfStdPkRep1_peak.sga HRPEpiC - CTCF - Rep1 - peaks CTCF_P GSM749673
85 wgEncodeUwTfbsHrpeCtcfStdPkRep2_peak.sga HRPEpiC - CTCF - Rep2 - peaks CTCF_P GSM1022665
86 wgEncodeUwTfbsHuvecCtcfStdPkRep1_peak.sga HUVEC - CTCF - Rep1 - peaks CTCF_P GSM749674
87 wgEncodeUwTfbsHuvecCtcfStdPkRep2_peak.sga HUVEC - CTCF - Rep2 - peaks CTCF_P GSM749749
88 wgEncodeUwTfbsHvmfCtcfStdPkRep1_peak.sga HVMF - CTCF - Rep1 - peaks CTCF_P GSM1022630
89 wgEncodeUwTfbsHvmfCtcfStdPkRep2_peak.sga HVMF - CTCF - Rep2 - peaks CTCF_P GSM1022628
90 wgEncodeUwTfbsHelas3CtcfStdPkRep1_peak.sga HeLa-S3 - Rep1 CTCF_P GSM749729
91 wgEncodeUwTfbsHelas3CtcfStdPkRep2_peak.sga HeLa-S3 - Rep2 CTCF_P GSM749739
92 wgEncodeUwTfbsHepg2CtcfStdPkRep1_peak.sga HepG2 - CTCF - Rep1 - peaks CTCF_P GSM749715
93 wgEncodeUwTfbsHepg2CtcfStdPkRep2_peak.sga HepG2 - CTCF - Rep2 - peaks CTCF_P GSM749683
94 wgEncodeUwTfbsK562CtcfStdPkRep1_peak.sga K562 - CTCF - Rep1 - peaks CTCF_P GSM749690
95 wgEncodeUwTfbsK562CtcfStdPkRep2_peak.sga K562 - CTCF - Rep2 - peaks CTCF_P GSM749733
96 wgEncodeUwTfbsMcf7CtcfStdPkRep1_peak.sga MCF-7 - Rep1 CTCF_P GSM1022658
97 wgEncodeUwTfbsMcf7CtcfStdPkRep2_peak.sga MCF-7 - Rep2 CTCF_P GSM1022663
98 wgEncodeUwTfbsNb4CtcfStdPkRep1_peak.sga NB4 - CTCF - Rep1 - peaks CTCF_P GSM1022643
99 wgEncodeUwTfbsNhdfneoCtcfStdPkRep1_peak.sga NHDF-neo - Rep1 CTCF_P GSM1022675
100 wgEncodeUwTfbsNhdfneoCtcfStdPkRep2_peak.sga NHDF-neo - Rep2 CTCF_P GSM1022676
101 wgEncodeUwTfbsNhekCtcfStdPkRep1_peak.sga NHEK - CTCF - Rep1 - peaks CTCF_P GSM749707
102 wgEncodeUwTfbsNhekCtcfStdPkRep2_peak.sga NHEK - CTCF - Rep2 - peaks CTCF_P GSM749747
103 wgEncodeUwTfbsNhlfCtcfStdPkRep1_peak.sga NHLF - CTCF - Rep1 - peaks CTCF_P GSM1022626
104 wgEncodeUwTfbsRptecCtcfStdPkRep1_peak.sga RPTEC - CTCF - Rep1 - peaks CTCF_P GSM1022667
105 wgEncodeUwTfbsRptecCtcfStdPkRep2_peak.sga RPTEC - CTCF - Rep2 - peaks CTCF_P GSM1022666
106 wgEncodeUwTfbsSaecCtcfStdPkRep1_peak.sga SAEC - CTCF - Rep1 - peaks CTCF_P GSM749684
107 wgEncodeUwTfbsSaecCtcfStdPkRep2_peak.sga SAEC - CTCF - Rep2 - peaks CTCF_P GSM749779
108 wgEncodeUwTfbsSknshraCtcfStdPkRep1_peak.sga SK-N- Rep1 - CTCF CTCF_P GSM749693
109 wgEncodeUwTfbsSknshraCtcfStdPkRep2_peak.sga SK-N- Rep2 - CTCF CTCF_P GSM749667
110 wgEncodeUwTfbsWerirb1CtcfStdPkRep1_peak.sga WERI-Rb- Rep1 - CTCF CTCF_P GSM749768
111 wgEncodeUwTfbsWerirb1CtcfStdPkRep2_peak.sga WERI-Rb- Rep2 - CTCF CTCF_P GSM749679
112 wgEncodeUwTfbsWi38CtcfStdPkRep1_peak.sga WI-38 - Rep1 CTCF_P GSM1022637
113 wgEncodeUwTfbsWi38CtcfStdPkRep2_peak.sga WI-38 - Rep2 CTCF_P GSM1022634

Technical Notes

BAM files were converted to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.3).

References

Last update: 26 Sep 2017