Thurman 2012, DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington

Description:

This samples serie was produced as part of the ENCODE Project. Thiese samples represent DNaseI sensitivity measured genome-wide in different cell lines using the DNaseI hypersensitive site technology.

Source

Files downloaded from the UCSC Genome Browser via URL: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwDnase
Input file format: BAM Alternatively, files can be downloaded from GEO serie GSE29692.

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly

Filename Description Feature GEO-ID
1 wgEncodeUwDnaseA549AlnRep1.sga DNaseI HS - A549 - None - Rep1 DNaseI-HS GSM736580
2 wgEncodeUwDnaseA549AlnRep2.sga DNaseI HS - A549 - None - Rep2 DNaseI-HS GSM736506
3 wgEncodeUwDnaseAg04449AlnRep1.sga DNaseI HS - AG04449 - None - Rep1 DNaseI-HS GSM736562
4 wgEncodeUwDnaseAg04449AlnRep2.sga DNaseI HS - AG04449 - None - Rep2 DNaseI-HS GSM736590
5 wgEncodeUwDnaseAg04450AlnRep1.sga DNaseI HS - AG04450 - None - Rep1 DNaseI-HS GSM736514
6 wgEncodeUwDnaseAg04450AlnRep2.sga DNaseI HS - AG04450 - None - Rep2 DNaseI-HS GSM736563
7 wgEncodeUwDnaseAg09309AlnRep1.sga DNaseI HS - AG09309 - None - Rep1 DNaseI-HS GSM736551
8 wgEncodeUwDnaseAg09309AlnRep2.sga DNaseI HS - AG09309 - None - Rep2 DNaseI-HS GSM736616
9 wgEncodeUwDnaseAg09319AlnRep1.sga DNaseI HS - AG09319 - None - Rep1 DNaseI-HS GSM736531
10 wgEncodeUwDnaseAg09319AlnRep2.sga DNaseI HS - AG09319 - None - Rep2 DNaseI-HS GSM736619
11 wgEncodeUwDnaseAg10803AlnRep1.sga DNaseI HS - AG10803 - None - Rep1 DNaseI-HS GSM736598
12 wgEncodeUwDnaseAg10803AlnRep2.sga DNaseI HS - AG10803 - None - Rep2 DNaseI-HS GSM736633
13 wgEncodeUwDnaseAoafAlnRep1.sga DNaseI HS - AoAF - None - Rep1 DNaseI-HS GSM736583
14 wgEncodeUwDnaseAoafAlnRep2.sga DNaseI HS - AoAF - None - Rep2 DNaseI-HS GSM736505
15 wgEncodeUwDnaseBe2cAlnRep1.sga DNaseI HS - BE2_C - None - Rep1 DNaseI-HS GSM736508
16 wgEncodeUwDnaseBe2cAlnRep2.sga DNaseI HS - BE2_C - None - Rep2 DNaseI-HS GSM736622
17 wgEncodeUwDnaseBjAlnRep1.sga DNaseI HS - BJ - None - Rep1 DNaseI-HS GSM736518
18 wgEncodeUwDnaseBjAlnRep2.sga DNaseI HS - BJ - None - Rep2 DNaseI-HS GSM736596
19 wgEncodeUwDnaseCaco2AlnRep1.sga DNaseI HS - Caco-2 - None - Rep1 DNaseI-HS GSM736500
20 wgEncodeUwDnaseCaco2AlnRep2.sga DNaseI HS - Caco-2 - None - Rep2 DNaseI-HS GSM736587
21 wgEncodeUwDnaseCd20ro01778AlnRep1.sga DNaseI HS - CD20+_RO01778 - None - Rep1 DNaseI-HS -
22 wgEncodeUwDnaseCd20ro01778AlnRep2.sga DNaseI HS - CD20+_RO01778 - None - Rep2 DNaseI-HS -
23 wgEncodeUwDnaseCd34mobilizedAlnRep1.sga DNaseI HS - CD34+_Mobilized - None - Rep1 DNaseI-HS -
24 wgEncodeUwDnaseCd4naivewb11970640AlnRep1.sga DNaseI HS - CD4+_Naive_Wb11970640 - None - Rep1 DNaseI-HS -
25 wgEncodeUwDnaseCd4naivewb78495824AlnRep1.sga DNaseI HS - CD4+_Naive_Wb78495824 - None - Rep1 DNaseI-HS -
26 wgEncodeUwDnaseCmkAlnRep1.sga DNaseI HS - CMK - None - Rep1 DNaseI-HS GSM736607
27 wgEncodeUwDnaseGm04503AlnRep1.sga DNaseI HS - GM04503 - None - Rep1 DNaseI-HS -
28 wgEncodeUwDnaseGm04503AlnRep2.sga DNaseI HS - GM04503 - None - Rep2 DNaseI-HS -
29 wgEncodeUwDnaseGm04504AlnRep1.sga DNaseI HS - GM04504 - None - Rep1 DNaseI-HS -
30 wgEncodeUwDnaseGm04504AlnRep2.sga DNaseI HS - GM04504 - None - Rep2 DNaseI-HS -
31 wgEncodeUwDnaseGm06990AlnRep1.sga DNaseI HS - GM06990 - None - Rep1 DNaseI-HS GSM736558
32 wgEncodeUwDnaseGm06990AlnRep2.sga DNaseI HS - GM06990 - None - Rep2 DNaseI-HS GSM736635
33 wgEncodeUwDnaseGm12864AlnRep1.sga DNaseI HS - GM12864 - None - Rep1 DNaseI-HS GSM736525
34 wgEncodeUwDnaseGm12865AlnRep1.sga DNaseI HS - GM12865 - None - Rep1 DNaseI-HS GSM736512
35 wgEncodeUwDnaseGm12865AlnRep2.sga DNaseI HS - GM12865 - None - Rep2 DNaseI-HS GSM736561
36 wgEncodeUwDnaseGm12878AlnRep1.sga DNaseI HS - GM12878 - None - Rep1 DNaseI-HS GSM736496
37 wgEncodeUwDnaseGm12878AlnRep2.sga DNaseI HS - GM12878 - None - Rep2 DNaseI-HS GSM736620
38 wgEncodeUwDnaseH1hescAlnRep1.sga DNaseI HS - H1-hESC - None - Rep1 DNaseI-HS GSM736582
39 wgEncodeUwDnaseH7esAlnRep1.sga DNaseI HS - H7-hESC - None - Rep1 DNaseI-HS GSM736638
40 wgEncodeUwDnaseH7esAlnRep2.sga DNaseI HS - H7-hESC - None - Rep2 DNaseI-HS GSM736610
41 wgEncodeUwDnaseH7esDiffa14dAlnRep1.sga DNaseI HS - H7-hESC - diffProtA_14d - Rep1 DNaseI-HS -
42 wgEncodeUwDnaseH7esDiffa14dAlnRep2.sga DNaseI HS - H7-hESC - diffProtA_14d - Rep2 DNaseI-HS -
43 wgEncodeUwDnaseH7esDiffa2dAlnRep1.sga DNaseI HS - H7-hESC - diffProtA_2d - Rep1 DNaseI-HS -
44 wgEncodeUwDnaseH7esDiffa5dAlnRep1.sga DNaseI HS - H7-hESC - diffProtA_5d - Rep1 DNaseI-HS -
45 wgEncodeUwDnaseH7esDiffa5dAlnRep2.sga DNaseI HS - H7-hESC - diffProtA_5d - Rep2 DNaseI-HS -
46 wgEncodeUwDnaseH7esDiffa9dAlnRep1.sga DNaseI HS - H7-hESC - diffProtA_9d - Rep1 DNaseI-HS -
47 wgEncodeUwDnaseHacAlnRep1.sga DNaseI HS - HAc - None - Rep1 DNaseI-HS GSM736586
48 wgEncodeUwDnaseHacAlnRep2.sga DNaseI HS - HAc - None - Rep2 DNaseI-HS GSM736538
49 wgEncodeUwDnaseHaeAlnRep1.sga DNaseI HS - HAEpiC - None - Rep1 DNaseI-HS GSM736631
50 wgEncodeUwDnaseHaeAlnRep2.sga DNaseI HS - HAEpiC - None - Rep2 DNaseI-HS GSM736606
51 wgEncodeUwDnaseHahAlnRep1.sga DNaseI HS - HA-h - None - Rep1 DNaseI-HS GSM736594
52 wgEncodeUwDnaseHahAlnRep2.sga DNaseI HS - HA-h - None - Rep2 DNaseI-HS GSM736535
53 wgEncodeUwDnaseHaspAlnRep1.sga DNaseI HS - HA-sp - None - Rep1 DNaseI-HS GSM736537
54 wgEncodeUwDnaseHaspAlnRep2.sga DNaseI HS - HA-sp - None - Rep2 DNaseI-HS GSM736625
55 wgEncodeUwDnaseHbmecAlnRep1.sga DNaseI HS - HBMEC - None - Rep1 DNaseI-HS GSM736509
56 wgEncodeUwDnaseHbmecAlnRep2.sga DNaseI HS - HBMEC - None - Rep2 DNaseI-HS GSM736554
57 wgEncodeUwDnaseHbvpAlnRep1.sga DNaseI HS - HBVP - None - Rep1 DNaseI-HS -
58 wgEncodeUwDnaseHbvsmcAlnRep1.sga DNaseI HS - HBVSMC - None - Rep1 DNaseI-HS -
59 wgEncodeUwDnaseHbvsmcAlnRep2.sga DNaseI HS - HBVSMC - None - Rep2 DNaseI-HS -
60 wgEncodeUwDnaseHcfAlnRep1.sga DNaseI HS - HCF - None - Rep1 DNaseI-HS GSM736568
61 wgEncodeUwDnaseHcfAlnRep2.sga DNaseI HS - HCF - None - Rep2 DNaseI-HS GSM736540
62 wgEncodeUwDnaseHcfaaAlnRep1.sga DNaseI HS - HCFaa - None - Rep1 DNaseI-HS GSM736494
63 wgEncodeUwDnaseHcfaaAlnRep2.sga DNaseI HS - HCFaa - None - Rep2 DNaseI-HS GSM736601
64 wgEncodeUwDnaseHcmAlnRep1.sga DNaseI HS - HCM - None - Rep1 DNaseI-HS GSM736516
65 wgEncodeUwDnaseHcmAlnRep2.sga DNaseI HS - HCM - None - Rep2 DNaseI-HS GSM736504
66 wgEncodeUwDnaseHconfAlnRep1.sga DNaseI HS - HConF - None - Rep1 DNaseI-HS GSM736547
67 wgEncodeUwDnaseHconfAlnRep2.sga DNaseI HS - HConF - None - Rep2 DNaseI-HS GSM736515
68 wgEncodeUwDnaseHcpeAlnRep1.sga DNaseI HS - HCPEpiC - None - Rep1 DNaseI-HS GSM736569
69 wgEncodeUwDnaseHcpeAlnRep2.sga DNaseI HS - HCPEpiC - None - Rep2 DNaseI-HS GSM736597
70 wgEncodeUwDnaseHct116AlnRep1.sga DNaseI HS - HCT-116 - None - Rep1 DNaseI-HS GSM736600
71 wgEncodeUwDnaseHct116AlnRep2.sga DNaseI HS - HCT-116 - None - Rep2 DNaseI-HS GSM736493
72 wgEncodeUwDnaseHeeAlnRep1.sga DNaseI HS - HEEpiC - None - Rep1 DNaseI-HS GSM736585
73 wgEncodeUwDnaseHeeAlnRep2.sga DNaseI HS - HEEpiC - None - Rep2 DNaseI-HS GSM736532
74 wgEncodeUwDnaseHelas3AlnRep1.sga DNaseI HS - HeLa-S3 - None - Rep1 DNaseI-HS GSM736564
75 wgEncodeUwDnaseHelas3AlnRep2.sga DNaseI HS - HeLa-S3 - None - Rep2 DNaseI-HS GSM736510
76 wgEncodeUwDnaseHepg2AlnRep1.sga DNaseI HS - HepG2 - None - Rep1 DNaseI-HS GSM736637
77 wgEncodeUwDnaseHepg2AlnRep2.sga DNaseI HS - HepG2 - None - Rep2 DNaseI-HS GSM736639
78 wgEncodeUwDnaseHffAlnRep1.sga DNaseI HS - HFF - None - Rep1 DNaseI-HS GSM736602
79 wgEncodeUwDnaseHffAlnRep2.sga DNaseI HS - HFF - None - Rep2 DNaseI-HS GSM736572
80 wgEncodeUwDnaseHffmycAlnRep1.sga DNaseI HS - HFF-Myc - None - Rep1 DNaseI-HS GSM736524
81 wgEncodeUwDnaseHffmycAlnRep2.sga DNaseI HS - HFF-Myc - None - Rep2 DNaseI-HS GSM736605
82 wgEncodeUwDnaseHgfAlnRep1.sga DNaseI HS - HGF - None - Rep1 DNaseI-HS GSM736579
83 wgEncodeUwDnaseHgfAlnRep2.sga DNaseI HS - HGF - None - Rep2 DNaseI-HS GSM736576
84 wgEncodeUwDnaseHipeAlnRep1.sga DNaseI HS - HIPEpiC - None - Rep1 DNaseI-HS GSM736589
85 wgEncodeUwDnaseHipeAlnRep2.sga DNaseI HS - HIPEpiC - None - Rep2 DNaseI-HS GSM736615
86 wgEncodeUwDnaseHl60AlnRep1.sga DNaseI HS - HL-60 - None - Rep1 DNaseI-HS GSM736626
87 wgEncodeUwDnaseHl60AlnRep2.sga DNaseI HS - HL-60 - None - Rep2 DNaseI-HS GSM736595
88 wgEncodeUwDnaseHmecAlnRep1.sga DNaseI HS - HMEC - None - Rep1 DNaseI-HS GSM736634
89 wgEncodeUwDnaseHmecAlnRep2.sga DNaseI HS - HMEC - None - Rep2 DNaseI-HS GSM736552
90 wgEncodeUwDnaseHmfAlnRep1.sga DNaseI HS - HMF - None - Rep1 DNaseI-HS GSM736628
91 wgEncodeUwDnaseHmfAlnRep2.sga DNaseI HS - HMF - None - Rep2 DNaseI-HS GSM736541
92 wgEncodeUwDnaseHmvecdadAlnRep1.sga DNaseI HS - HMVEC-dAd - None - Rep1 DNaseI-HS -
93 wgEncodeUwDnaseHmvecdadAlnRep2.sga DNaseI HS - HMVEC-dAd - None - Rep2 DNaseI-HS -
94 wgEncodeUwDnaseHmvecdbladAlnRep1.sga DNaseI HS - HMVEC-dBl-Ad - None - Rep1 DNaseI-HS GSM736609
95 wgEncodeUwDnaseHmvecdbladAlnRep2.sga DNaseI HS - HMVEC-dBl-Ad - None - Rep2 DNaseI-HS GSM736523
96 wgEncodeUwDnaseHmvecdblneoAlnRep1.sga DNaseI HS - HMVEC-dBl-Neo - None - Rep1 DNaseI-HS GSM736571
97 wgEncodeUwDnaseHmvecdblneoAlnRep2.sga DNaseI HS - HMVEC-dBl-Neo - None - Rep2 DNaseI-HS GSM736521
98 wgEncodeUwDnaseHmvecdlyadAlnRep1.sga DNaseI HS - HMVEC-dLy-Ad - None - Rep1 DNaseI-HS GSM736599
99 wgEncodeUwDnaseHmvecdlyadAlnRep2.sga DNaseI HS - HMVEC-dLy-Ad - None - Rep2 DNaseI-HS GSM736591
100 wgEncodeUwDnaseHmvecdlyneoAlnRep1.sga DNaseI HS - HMVEC-dLy-Neo - None - Rep1 DNaseI-HS GSM736577
101 wgEncodeUwDnaseHmvecdlyneoAlnRep2.sga DNaseI HS - HMVEC-dLy-Neo - None - Rep2 DNaseI-HS GSM736573
102 wgEncodeUwDnaseHmvecdneoAlnRep1.sga DNaseI HS - HMVEC-dNeo - None - Rep1 DNaseI-HS GSM736611
103 wgEncodeUwDnaseHmvecdneoAlnRep2.sga DNaseI HS - HMVEC-dNeo - None - Rep2 DNaseI-HS GSM736624
104 wgEncodeUwDnaseHmveclblAlnRep1.sga DNaseI HS - HMVEC-LBl - None - Rep1 DNaseI-HS GSM736542
105 wgEncodeUwDnaseHmveclblAlnRep2.sga DNaseI HS - HMVEC-LBl - None - Rep2 DNaseI-HS GSM736511
106 wgEncodeUwDnaseHmvecllyAlnRep1.sga DNaseI HS - HMVEC-LLy - None - Rep1 DNaseI-HS GSM736507
107 wgEncodeUwDnaseHmvecllyAlnRep2.sga DNaseI HS - HMVEC-LLy - None - Rep2 DNaseI-HS GSM736627
108 wgEncodeUwDnaseHnpceAlnRep1.sga DNaseI HS - HNPCEpiC - None - Rep1 DNaseI-HS GSM736621
109 wgEncodeUwDnaseHnpceAlnRep2.sga DNaseI HS - HNPCEpiC - None - Rep2 DNaseI-HS GSM736550
110 wgEncodeUwDnaseHpaecAlnRep1.sga DNaseI HS - HPAEC - None - Rep1 DNaseI-HS -
111 wgEncodeUwDnaseHpafAlnRep1.sga DNaseI HS - HPAF - None - Rep1 DNaseI-HS GSM736555
112 wgEncodeUwDnaseHpafAlnRep2.sga DNaseI HS - HPAF - None - Rep2 DNaseI-HS GSM736614
113 wgEncodeUwDnaseHpdlfAlnRep1.sga DNaseI HS - HPdLF - None - Rep1 DNaseI-HS GSM736632
114 wgEncodeUwDnaseHpdlfAlnRep2.sga DNaseI HS - HPdLF - None - Rep2 DNaseI-HS GSM736528
115 wgEncodeUwDnaseHpfAlnRep1.sga DNaseI HS - HPF - None - Rep1 DNaseI-HS GSM736574
116 wgEncodeUwDnaseHpfAlnRep2.sga DNaseI HS - HPF - None - Rep2 DNaseI-HS GSM736503
117 wgEncodeUwDnaseHrceAlnRep1.sga DNaseI HS - HRCEpiC - None - Rep1 DNaseI-HS GSM736549
118 wgEncodeUwDnaseHrceAlnRep2.sga DNaseI HS - HRCEpiC - None - Rep2 DNaseI-HS GSM736557
119 wgEncodeUwDnaseHreAlnRep1.sga DNaseI HS - HRE - None - Rep1 DNaseI-HS GSM736527
120 wgEncodeUwDnaseHreAlnRep2.sga DNaseI HS - HRE - None - Rep2 DNaseI-HS GSM736548
121 wgEncodeUwDnaseHrgecAlnRep1.sga DNaseI HS - HRGEC - None - Rep1 DNaseI-HS GSM736499
122 wgEncodeUwDnaseHrgecAlnRep2.sga DNaseI HS - HRGEC - None - Rep2 DNaseI-HS GSM736618
123 wgEncodeUwDnaseHrpeAlnRep1.sga DNaseI HS - HRPEpiC - None - Rep1 DNaseI-HS GSM736630
124 wgEncodeUwDnaseHrpeAlnRep2.sga DNaseI HS - HRPEpiC - None - Rep2 DNaseI-HS GSM736623
125 wgEncodeUwDnaseHs27aAlnRep1.sga DNaseI HS - bone_marrow_HS27a - None - Rep1 DNaseI-HS -
126 wgEncodeUwDnaseHs5AlnRep1.sga DNaseI HS - bone_marrow_HS5 - None - Rep1 DNaseI-HS -
127 wgEncodeUwDnaseHsmmAlnRep1.sga DNaseI HS - HSMM - None - Rep1 DNaseI-HS GSM736560
128 wgEncodeUwDnaseHsmmAlnRep2.sga DNaseI HS - HSMM - None - Rep2 DNaseI-HS GSM736553
129 wgEncodeUwDnaseHsmmtAlnRep1.sga DNaseI HS - HSMMtube - None - Rep1 DNaseI-HS GSM736530
130 wgEncodeUwDnaseHsmmtAlnRep2.sga DNaseI HS - HSMMtube - None - Rep2 DNaseI-HS -
131 wgEncodeUwDnaseHuvecAlnRep1.sga DNaseI HS - HUVEC - None - Rep1 DNaseI-HS GSM736575
132 wgEncodeUwDnaseHuvecAlnRep2.sga DNaseI HS - HUVEC - None - Rep2 DNaseI-HS GSM736533
133 wgEncodeUwDnaseHvmfAlnRep1.sga DNaseI HS - HVMF - None - Rep1 DNaseI-HS GSM736534
134 wgEncodeUwDnaseHvmfAlnRep2.sga DNaseI HS - HVMF - None - Rep2 DNaseI-HS GSM736491
135 wgEncodeUwDnaseJurkatAlnRep1.sga DNaseI HS - Jurkat - None - Rep1 DNaseI-HS GSM736501
136 wgEncodeUwDnaseJurkatAlnRep2.sga DNaseI HS - Jurkat - None - Rep2 DNaseI-HS GSM736492
137 wgEncodeUwDnaseK562AlnRep1.sga DNaseI HS - K562 - None - Rep1 DNaseI-HS GSM736629
138 wgEncodeUwDnaseK562AlnRep2.sga DNaseI HS - K562 - None - Rep2 DNaseI-HS GSM736566
139 wgEncodeUwDnaseK562Znf2c10c5AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_2C10_C5 - Rep1 DNaseI-HS -
140 wgEncodeUwDnaseK562Znf2c10c5AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_2C10_C5 - Rep2 DNaseI-HS -
141 wgEncodeUwDnaseK562Znf4c50c4AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_4C50_C4 - Rep1 DNaseI-HS -
142 wgEncodeUwDnaseK562Znf4c50c4AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_4C50_C4 - Rep2 DNaseI-HS -
143 wgEncodeUwDnaseK562Znf4g7d3AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_4G7_D3 - Rep1 DNaseI-HS -
144 wgEncodeUwDnaseK562Znf4g7d3AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_4G7_D3 - Rep2 DNaseI-HS -
145 wgEncodeUwDnaseK562Znfa41c6AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_A4.1-C6 - Rep1 DNaseI-HS -
146 wgEncodeUwDnaseK562Znfa41c6AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_A4.1-C6 - Rep2 DNaseI-HS -
147 wgEncodeUwDnaseK562Znfb34a8AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_B3.4-A8 - Rep1 DNaseI-HS -
148 wgEncodeUwDnaseK562Znfb34a8AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_B3.4-A8 - Rep2 DNaseI-HS -
149 wgEncodeUwDnaseK562Znfe103c6AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_E10.3-C6 - Rep1 DNaseI-HS -
150 wgEncodeUwDnaseK562Znfe103c6AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_E10.3-C6 - Rep2 DNaseI-HS -
151 wgEncodeUwDnaseK562Znff41b2AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_F4.1-B2 - Rep1 DNaseI-HS -
152 wgEncodeUwDnaseK562Znff41b2AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_F4.1-B2 - Rep2 DNaseI-HS -
153 wgEncodeUwDnaseK562Znfg54a11AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_G5.4-A11 - Rep1 DNaseI-HS -
154 wgEncodeUwDnaseK562Znfg54a11AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_G5.4-A11 - Rep2 DNaseI-HS -
155 wgEncodeUwDnaseK562Znfp5AlnRep1.sga DNaseI HS - K562 - ZNF_knockout_P5 - Rep1 DNaseI-HS -
156 wgEncodeUwDnaseK562Znfp5AlnRep2.sga DNaseI HS - K562 - ZNF_knockout_P5 - Rep2 DNaseI-HS -
157 wgEncodeUwDnaseLhcnm2AlnRep1.sga DNaseI HS - LHCN-M2 - None - Rep1 DNaseI-HS -
158 wgEncodeUwDnaseLhcnm2AlnRep2.sga DNaseI HS - LHCN-M2 - None - Rep2 DNaseI-HS -
159 wgEncodeUwDnaseLhcnm2Diff4dAlnRep1.sga DNaseI HS - LHCN-M2 - DIFF_4d - Rep1 DNaseI-HS -
160 wgEncodeUwDnaseLhcnm2Diff4dAlnRep2.sga DNaseI HS - LHCN-M2 - DIFF_4d - Rep2 DNaseI-HS -
161 wgEncodeUwDnaseLncapAlnRep1.sga DNaseI HS - LNCaP - None - Rep1 DNaseI-HS GSM736565
162 wgEncodeUwDnaseLncapAlnRep2.sga DNaseI HS - LNCaP - None - Rep2 DNaseI-HS GSM736603
163 wgEncodeUwDnaseM059jAlnRep1.sga DNaseI HS - M059J - None - Rep1 DNaseI-HS -
164 wgEncodeUwDnaseM059jAlnRep2.sga DNaseI HS - M059J - None - Rep2 DNaseI-HS -
165 wgEncodeUwDnaseMcf7AlnRep1.sga DNaseI HS - MCF-7 - None - Rep1 DNaseI-HS GSM736581
166 wgEncodeUwDnaseMcf7AlnRep2.sga DNaseI HS - MCF-7 - None - Rep2 DNaseI-HS GSM736588
167 wgEncodeUwDnaseMcf7Est100nm1hAlnRep1.sga DNaseI HS - MCF-7 - Estradiol_100nM_1hr - Rep1 DNaseI-HS -
168 wgEncodeUwDnaseMcf7Est100nm1hAlnRep2.sga DNaseI HS - MCF-7 - Estradiol_100nM_1hr - Rep2 DNaseI-HS -
169 wgEncodeUwDnaseMcf7Estctrl0hAlnRep1.sga DNaseI HS - MCF-7 - Estradiol_ctrl_0hr - Rep1 DNaseI-HS -
170 wgEncodeUwDnaseMcf7Estctrl0hAlnRep2.sga DNaseI HS - MCF-7 - Estradiol_ctrl_0hr - Rep2 DNaseI-HS -
171 wgEncodeUwDnaseMonocd14AlnRep1.sga DNaseI HS - Monocytes-CD14+_RO01746 - None - Rep1 DNaseI-HS -
172 wgEncodeUwDnaseMonocd14ro1746AlnRep1.sga DNaseI HS - Monocytes-CD14+_RO01746 - None - Rep1 DNaseI-HS -
173 wgEncodeUwDnaseMonocd14ro1746AlnRep1V2.sga DNaseI HS - Monocytes-CD14+_RO01746 - None - Rep1 DNaseI-HS -
174 wgEncodeUwDnaseMonocd14ro1746AlnRep2.sga DNaseI HS - Monocytes-CD14+_RO01746 - None - Rep2 DNaseI-HS -
175 wgEncodeUwDnaseMscAlnRep1.sga DNaseI HS - bone_marrow_MSC - None - Rep1 DNaseI-HS -
176 wgEncodeUwDnaseMscAlnRep2.sga DNaseI HS - bone_marrow_MSC - None - Rep2 DNaseI-HS -
177 wgEncodeUwDnaseNb4AlnRep1.sga DNaseI HS - NB4 - None - Rep1 DNaseI-HS GSM736604
178 wgEncodeUwDnaseNb4AlnRep2.sga DNaseI HS - NB4 - None - Rep2 DNaseI-HS GSM736529
179 wgEncodeUwDnaseNhaAlnRep1.sga DNaseI HS - NH-A - None - Rep1 DNaseI-HS GSM736544
180 wgEncodeUwDnaseNhaAlnRep2.sga DNaseI HS - NH-A - None - Rep2 DNaseI-HS GSM736584
181 wgEncodeUwDnaseNhberaAlnRep1.sga DNaseI HS - NHBE_RA - None - Rep1 DNaseI-HS -
182 wgEncodeUwDnaseNhberaAlnRep2.sga DNaseI HS - NHBE_RA - None - Rep2 DNaseI-HS -
183 wgEncodeUwDnaseNhdfadAlnRep1.sga DNaseI HS - NHDF-Ad - None - Rep1 DNaseI-HS GSM736567
184 wgEncodeUwDnaseNhdfadAlnRep2.sga DNaseI HS - NHDF-Ad - None - Rep2 DNaseI-HS GSM736520
185 wgEncodeUwDnaseNhdfneoAlnRep1.sga DNaseI HS - NHDF-neo - None - Rep1 DNaseI-HS GSM736498
186 wgEncodeUwDnaseNhdfneoAlnRep2.sga DNaseI HS - NHDF-neo - None - Rep2 DNaseI-HS GSM736546
187 wgEncodeUwDnaseNhekAlnRep1.sga DNaseI HS - NHEK - None - Rep1 DNaseI-HS GSM736545
188 wgEncodeUwDnaseNhekAlnRep2.sga DNaseI HS - NHEK - None - Rep2 DNaseI-HS GSM736556
189 wgEncodeUwDnaseNhlfAlnRep1.sga DNaseI HS - NHLF - None - Rep1 DNaseI-HS GSM736612
190 wgEncodeUwDnaseNhlfAlnRep2.sga DNaseI HS - NHLF - None - Rep2 DNaseI-HS GSM736536
191 wgEncodeUwDnaseNt2d1AlnRep1.sga DNaseI HS - NT2-D1 - None - Rep1 DNaseI-HS -
192 wgEncodeUwDnaseNt2d1AlnRep2.sga DNaseI HS - NT2-D1 - None - Rep2 DNaseI-HS -
193 wgEncodeUwDnasePanc1AlnRep1.sga DNaseI HS - PANC-1 - None - Rep1 DNaseI-HS GSM736517
194 wgEncodeUwDnasePanc1AlnRep2.sga DNaseI HS - PANC-1 - None - Rep2 DNaseI-HS GSM736519
195 wgEncodeUwDnasePrecAlnRep1.sga DNaseI HS - PrEC - None - Rep1 DNaseI-HS -
196 wgEncodeUwDnasePrecAlnRep2.sga DNaseI HS - PrEC - None - Rep2 DNaseI-HS -
197 wgEncodeUwDnaseRpmi7951AlnRep1.sga DNaseI HS - RPMI-7951 - None - Rep1 DNaseI-HS -
198 wgEncodeUwDnaseRpmi7951AlnRep2.sga DNaseI HS - RPMI-7951 - None - Rep2 DNaseI-HS -
199 wgEncodeUwDnaseRptecAlnRep1.sga DNaseI HS - RPTEC - None - Rep1 DNaseI-HS GSM736543
200 wgEncodeUwDnaseRptecAlnRep2.sga DNaseI HS - RPTEC - None - Rep2 DNaseI-HS GSM736539
201 wgEncodeUwDnaseSaecAlnRep1.sga DNaseI HS - SAEC - None - Rep1 DNaseI-HS GSM736608
202 wgEncodeUwDnaseSaecAlnRep2.sga DNaseI HS - SAEC - None - Rep2 DNaseI-HS GSM736617
203 wgEncodeUwDnaseSkmcAlnRep1.sga DNaseI HS - SKMC - None - Rep1 DNaseI-HS GSM736593
204 wgEncodeUwDnaseSkmcAlnRep2.sga DNaseI HS - SKMC - None - Rep2 DNaseI-HS GSM736497
205 wgEncodeUwDnaseSknmcAlnRep1.sga DNaseI HS - SK-N-MC - None - Rep1 DNaseI-HS GSM736522
206 wgEncodeUwDnaseSknmcAlnRep2.sga DNaseI HS - SK-N-MC - None - Rep2 DNaseI-HS GSM736570
207 wgEncodeUwDnaseSknshraAlnRep1.sga DNaseI HS - SK-N-SH_RA - None - Rep1 DNaseI-HS GSM736559
208 wgEncodeUwDnaseSknshraAlnRep2.sga DNaseI HS - SK-N-SH_RA - None - Rep2 DNaseI-HS GSM736578
209 wgEncodeUwDnaseT47dAlnRep1.sga DNaseI HS - T-47D - None - Rep1 DNaseI-HS -
210 wgEncodeUwDnaseT47dAlnRep2.sga DNaseI HS - T-47D - None - Rep2 DNaseI-HS -
211 wgEncodeUwDnaseTh17AlnRep1.sga DNaseI HS - Th17 - None - Rep1 DNaseI-HS -
212 wgEncodeUwDnaseTh1AlnRep1.sga DNaseI HS - Th1 - None - Rep1 DNaseI-HS GSM736592
213 wgEncodeUwDnaseTh1AlnRep2.sga DNaseI HS - Th1 - None - Rep2 DNaseI-HS -
214 wgEncodeUwDnaseTh1wb33676984AlnRep1.sga DNaseI HS - Th1_Wb33676984 - None - Rep1 DNaseI-HS -
215 wgEncodeUwDnaseTh1wb54553204AlnRep1.sga DNaseI HS - Th1_Wb54553204 - None - Rep1 DNaseI-HS -
216 wgEncodeUwDnaseTh1wb54553204AlnRep2.sga DNaseI HS - Th1_Wb54553204 - None - Rep2 DNaseI-HS -
217 wgEncodeUwDnaseTh2AlnRep1.sga DNaseI HS - Th2 - None - Rep1 DNaseI-HS GSM736502
218 wgEncodeUwDnaseTh2AlnRep2.sga DNaseI HS - Th2 - None - Rep2 DNaseI-HS -
219 wgEncodeUwDnaseTh2wb33676984AlnRep1.sga DNaseI HS - Th2_Wb33676984 - None - Rep1 DNaseI-HS -
220 wgEncodeUwDnaseTh2wb54553204AlnRep1.sga DNaseI HS - Th2_Wb54553204 - None - Rep1 DNaseI-HS -
221 wgEncodeUwDnaseTregwb78495824AlnRep1.sga DNaseI HS - Treg_Wb78495824 - None - Rep1 DNaseI-HS -
222 wgEncodeUwDnaseTregwb83319432AlnRep1.sga DNaseI HS - Treg_Wb83319432 - None - Rep1 DNaseI-HS -
223 wgEncodeUwDnaseWerirb1AlnRep1.sga DNaseI HS - WERI-Rb-1 - None - Rep1 DNaseI-HS GSM736495
224 wgEncodeUwDnaseWerirb1AlnRep2.sga DNaseI HS - WERI-Rb-1 - None - Rep2 DNaseI-HS GSM736636
225 wgEncodeUwDnaseWi38AlnRep1.sga DNaseI HS - WI-38 - None - Rep1 DNaseI-HS GSM736613
226 wgEncodeUwDnaseWi38AlnRep2.sga DNaseI HS - WI-38 - None - Rep2 DNaseI-HS GSM736526
227 wgEncodeUwDnaseWi38OhtamAlnRep1.sga DNaseI HS - WI-38 - 4OHTAM_20nM_72hr - Rep1 DNaseI-HS GSM736613
228 wgEncodeUwDnaseWi38OhtamAlnRep2.sga DNaseI HS - WI-38 - 4OHTAM_20nM_72hr - Rep2 DNaseI-HS GSM736526

Technical Notes

BAM files were downloaded from UCSC and converted in sga format using bamToBed (SamTools) and bed2sga (ChIP-seq).

References

  1. Thurman RE, Rynes E, Humbert R, Vierstra J et al.
    The accessible chromatin landscape of the human genome.
    Nature 2012 Sep 6;489(7414):75-82-90
    PMID: 22955617

  2. GEO series GSE29692 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington.