Thurman 2012, Histone Modifications by ChIP-seq from ENCODE/University of Washington

Description:

This samples serie was produced as part of the ENCODE Project. This serie contains histone modification ChIP-seq data for several cell lines. Some of the samples have been treated or are genetically modified.

Source

Files downloaded from the UCSC Genome Browser via URL: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwHistone
Input file format: BAM Alternatively, files can be downloaded from GEO serie GSE35583.

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly

Filename Description Feature GEO-ID
1 wgEncodeUwHistoneAg04450H3k27acStdAlnRep1.sga AG04450 - H3K27ac - None - rep1 H3K27ac GSM1010912
2 wgEncodeUwHistoneAg04450H3k27me3StdAlnRep1.sga AG04450 - H3K27me3 - None - rep1 H3K27me3 GSM1010913
3 wgEncodeUwHistoneBjH3k27me3StdAlnRep1.sga BJ - H3K27me3 - None - rep1 H3K27me3 GSM945204
4 wgEncodeUwHistoneBjH3k27me3StdAlnRep2.sga BJ - H3K27me3 - None - rep2 H3K27me3 GSM945204
5 wgEncodeUwHistoneCaco2H3k27me3StdAlnRep1.sga Caco-2 - H3K27me3 - None - rep1 H3K27me3 GSM945203
6 wgEncodeUwHistoneCaco2H3k27me3StdAlnRep2.sga Caco-2 - H3K27me3 - None - rep2 H3K27me3 GSM945203
7 wgEncodeUwHistoneGm06990H3k27me3StdAlnRep1.sga GM06990 - H3K27me3 - None - rep1 H3K27me3 GSM945205
8 wgEncodeUwHistoneGm06990H3k27me3StdAlnRep2.sga GM06990 - H3K27me3 - None - rep2 H3K27me3 GSM945205
9 wgEncodeUwHistoneGm12878H3k27me3StdAlnRep1.sga GM12878 - H3K27me3 - None - rep1 H3K27me3 GSM945196
10 wgEncodeUwHistoneGm12878H3k27me3StdAlnRep2.sga GM12878 - H3K27me3 - None - rep2 H3K27me3 GSM945196
11 wgEncodeUwHistoneH7esH3k27me3StdAlnRep1.sga H7-hESC - H3K27me3 - None - rep1 H3K27me3 GSM945183
12 wgEncodeUwHistoneH7esH3k27me3StdAlnRep2.sga H7-hESC - H3K27me3 - None - rep2 H3K27me3 GSM945183
13 wgEncodeUwHistoneH7esH3k27me3StdDiffa14dAlnRep1.sga H7-hESC - H3K27me3 - diffProtA_14d - rep1 H3K27me3 GSM945320
14 wgEncodeUwHistoneH7esH3k27me3StdDiffa14dAlnRep2.sga H7-hESC - H3K27me3 - diffProtA_14d - rep2 H3K27me3 GSM945320
15 wgEncodeUwHistoneH7esH3k27me3StdDiffa2dAlnRep1.sga H7-hESC - H3K27me3 - diffProtA_2d - rep1 H3K27me3 GSM945325
16 wgEncodeUwHistoneH7esH3k27me3StdDiffa2dAlnRep2.sga H7-hESC - H3K27me3 - diffProtA_2d - rep2 H3K27me3 GSM945325
17 wgEncodeUwHistoneH7esH3k27me3StdDiffa5dAlnRep1.sga H7-hESC - H3K27me3 - diffProtA_5d - rep1 H3K27me3 GSM945326
18 wgEncodeUwHistoneH7esH3k27me3StdDiffa5dAlnRep2.sga H7-hESC - H3K27me3 - diffProtA_5d - rep2 H3K27me3 GSM945326
19 wgEncodeUwHistoneH7esH3k27me3StdDiffa9dAlnRep1.sga H7-hESC - H3K27me3 - diffProtA_9d - rep1 H3K27me3 GSM945323
20 wgEncodeUwHistoneH7esH3k27me3StdDiffa9dAlnRep2.sga H7-hESC - H3K27me3 - diffProtA_9d - rep2 H3K27me3 GSM945323
21 wgEncodeUwHistoneHmecH3k27me3StdAlnRep1.sga HMEC - H3K27me3 - None - rep1 H3K27me3 GSM945277
22 wgEncodeUwHistoneHreH3k27me3StdAlnRep1.sga HRE - H3K27me3 - None - rep1 H3K27me3 GSM945160
23 wgEncodeUwHistoneHreH3k27me3StdAlnRep2.sga HRE - H3K27me3 - None - rep2 H3K27me3 GSM945160
24 wgEncodeUwHistoneHuvecH3k27me3StdAlnRep1.sga HUVEC - H3K27me3 - None - rep1 H3K27me3 GSM945180
25 wgEncodeUwHistoneHuvecH3k27me3StdAlnRep2.sga HUVEC - H3K27me3 - None - rep2 H3K27me3 GSM945180
26 wgEncodeUwHistoneHelas3H3k27me3StdAlnRep1.sga HeLa-S3 - H3K27me3 - None - rep1 H3K27me3 GSM945208
27 wgEncodeUwHistoneHelas3H3k27me3StdAlnRep2.sga HeLa-S3 - H3K27me3 - None - rep2 H3K27me3 GSM945208
28 wgEncodeUwHistoneHepg2H3k27me3StdAlnRep1.sga HepG2 - H3K27me3 - None - rep1 H3K27me3 GSM945231
29 wgEncodeUwHistoneHepg2H3k27me3StdAlnRep2.sga HepG2 - H3K27me3 - None - rep2 H3K27me3 GSM945231
30 wgEncodeUwHistoneK562H3k27me3StdAlnRep1.sga K562 - H3K27me3 - None - rep1 H3K27me3 GSM945228
31 wgEncodeUwHistoneK562H3k27me3StdAlnRep2.sga K562 - H3K27me3 - None - rep2 H3K27me3 GSM945228
32 wgEncodeUwHistoneMonocd14ro1746H3k27me3StdAlnRep1.sga Monocytes-CD14+_RO01746 - H3K27me3 - None - rep1 H3K27me3 GSM945301
33 wgEncodeUwHistoneNhekH3k27me3StdAlnRep1.sga NHEK - H3K27me3 - None - rep1 H3K27me3 GSM945300
34 wgEncodeUwHistoneNhekH3k27me3StdAlnRep2.sga NHEK - H3K27me3 - None - rep2 H3K27me3 GSM945300
35 wgEncodeUwHistoneSaecH3k27me3StdAlnRep1.sga SAEC - H3K27me3 - None - rep1 H3K27me3 GSM945200
36 wgEncodeUwHistoneSaecH3k27me3StdAlnRep2.sga SAEC - H3K27me3 - None - rep2 H3K27me3 GSM945200
37 wgEncodeUwHistoneSknshraH3k27me3StdAlnRep1.sga SK-N-SH_RA - H3K27me3 - None - rep1 H3K27me3 GSM945210
38 wgEncodeUwHistoneSknshraH3k27me3StdAlnRep2.sga SK-N-SH_RA - H3K27me3 - None - rep2 H3K27me3 GSM945210
39 wgEncodeUwHistoneBjH3k36me3StdAlnRep1.sga BJ - H3K36me3 - None - rep1 H3K36me3 GSM945207
40 wgEncodeUwHistoneBjH3k36me3StdAlnRep2.sga BJ - H3K36me3 - None - rep2 H3K36me3 GSM945207
41 wgEncodeUwHistoneCaco2H3k36me3StdAlnRep1.sga Caco-2 - H3K36me3 - None - rep1 H3K36me3 GSM945206
42 wgEncodeUwHistoneCaco2H3k36me3StdAlnRep2.sga Caco-2 - H3K36me3 - None - rep2 H3K36me3 GSM945206
43 wgEncodeUwHistoneGm06990H3k36me3StdAlnRep1.sga GM06990 - H3K36me3 - None - rep1 H3K36me3 GSM945213
44 wgEncodeUwHistoneGm06990H3k36me3StdAlnRep2.sga GM06990 - H3K36me3 - None - rep2 H3K36me3 GSM945213
45 wgEncodeUwHistoneGm12878H3k36me3StdAlnRep1.sga GM12878 - H3K36me3 - None - rep1 H3K36me3 GSM945212
46 wgEncodeUwHistoneGm12878H3k36me3StdAlnRep2.sga GM12878 - H3K36me3 - None - rep2 H3K36me3 GSM945212
47 wgEncodeUwHistoneH7esH3k36me3StdAlnRep1.sga H7-hESC - H3K36me3 - None - rep1 H3K36me3 GSM945184
48 wgEncodeUwHistoneH7esH3k36me3StdAlnRep2.sga H7-hESC - H3K36me3 - None - rep2 H3K36me3 GSM945184
49 wgEncodeUwHistoneH7esH3k36me3StdDiffa14dAlnRep1.sga H7-hESC - H3K36me3 - diffProtA_14d - rep1 H3K36me3 GSM945324
50 wgEncodeUwHistoneH7esH3k36me3StdDiffa14dAlnRep2.sga H7-hESC - H3K36me3 - diffProtA_14d - rep2 H3K36me3 GSM945324
51 wgEncodeUwHistoneH7esH3k36me3StdDiffa2dAlnRep1.sga H7-hESC - H3K36me3 - diffProtA_2d - rep1 H3K36me3 GSM945315
52 wgEncodeUwHistoneH7esH3k36me3StdDiffa2dAlnRep2.sga H7-hESC - H3K36me3 - diffProtA_2d - rep2 H3K36me3 GSM945315
53 wgEncodeUwHistoneH7esH3k36me3StdDiffa5dAlnRep1.sga H7-hESC - H3K36me3 - diffProtA_5d - rep1 H3K36me3 GSM945316
54 wgEncodeUwHistoneH7esH3k36me3StdDiffa5dAlnRep2.sga H7-hESC - H3K36me3 - diffProtA_5d - rep2 H3K36me3 GSM945316
55 wgEncodeUwHistoneH7esH3k36me3StdDiffa9dAlnRep1.sga H7-hESC - H3K36me3 - diffProtA_9d - rep1 H3K36me3 GSM945192
56 wgEncodeUwHistoneH7esH3k36me3StdDiffa9dAlnRep2.sga H7-hESC - H3K36me3 - diffProtA_9d - rep2 H3K36me3 GSM945192
57 wgEncodeUwHistoneHreH3k36me3StdAlnRep1.sga HRE - H3K36me3 - None - rep1 H3K36me3 GSM945232
58 wgEncodeUwHistoneHreH3k36me3StdAlnRep2.sga HRE - H3K36me3 - None - rep2 H3K36me3 GSM945232
59 wgEncodeUwHistoneHuvecH3k36me3StdAlnRep1.sga HUVEC - H3K36me3 - None - rep1 H3K36me3 GSM945233
60 wgEncodeUwHistoneHuvecH3k36me3StdAlnRep2.sga HUVEC - H3K36me3 - None - rep2 H3K36me3 GSM945233
61 wgEncodeUwHistoneHelas3H3k36me3StdAlnRep1.sga HeLa-S3 - H3K36me3 - None - rep1 H3K36me3 GSM945230
62 wgEncodeUwHistoneHelas3H3k36me3StdAlnRep2.sga HeLa-S3 - H3K36me3 - None - rep2 H3K36me3 GSM945230
63 wgEncodeUwHistoneHepg2H3k36me3StdAlnRep1.sga HepG2 - H3K36me3 - None - rep1 H3K36me3 GSM945211
64 wgEncodeUwHistoneHepg2H3k36me3StdAlnRep2.sga HepG2 - H3K36me3 - None - rep2 H3K36me3 GSM945211
65 wgEncodeUwHistoneK562H3k36me3StdAlnRep1.sga K562 - H3K36me3 - None - rep1 H3K36me3 GSM945302
66 wgEncodeUwHistoneK562H3k36me3StdAlnRep2.sga K562 - H3K36me3 - None - rep2 H3K36me3 GSM945302
67 wgEncodeUwHistoneNhekH3k36me3StdAlnRep1.sga NHEK - H3K36me3 - None - rep1 H3K36me3 GSM945174
68 wgEncodeUwHistoneNhekH3k36me3StdAlnRep2.sga NHEK - H3K36me3 - None - rep2 H3K36me3 GSM945174
69 wgEncodeUwHistoneSaecH3k36me3StdAlnRep1.sga SAEC - H3K36me3 - None - rep1 H3K36me3 GSM945226
70 wgEncodeUwHistoneSaecH3k36me3StdAlnRep2.sga SAEC - H3K36me3 - None - rep2 H3K36me3 GSM945226
71 wgEncodeUwHistoneSknshraH3k36me3StdAlnRep1.sga SK-N-SH_RA - H3K36me3 - None - rep1 H3K36me3 GSM945209
72 wgEncodeUwHistoneSknshraH3k36me3StdAlnRep2.sga SK-N-SH_RA - H3K36me3 - None - rep2 H3K36me3 GSM945209
73 wgEncodeUwHistoneA549H3k04me3StdAlnRep1.sga A549 - H3K4me3 - None - rep1 H3K4me3 GSM945244
74 wgEncodeUwHistoneA549H3k04me3StdAlnRep2.sga A549 - H3K4me3 - None - rep2 H3K4me3 GSM945244
75 wgEncodeUwHistoneAg04449H3k4me3StdAlnRep1.sga AG04449 - H3K4me3 - None - rep1 H3K4me3 GSM945187
76 wgEncodeUwHistoneAg04449H3k4me3StdAlnRep2.sga AG04449 - H3K4me3 - None - rep2 H3K4me3 GSM945187
77 wgEncodeUwHistoneAg04450H3k4me3StdAlnRep1.sga AG04450 - H3K4me3 - None - rep1 H3K4me3 GSM945177
78 wgEncodeUwHistoneAg04450H3k4me3StdAlnRep2.sga AG04450 - H3K4me3 - None - rep2 H3K4me3 GSM945177
79 wgEncodeUwHistoneAg09309H3k4me3StdAlnRep1.sga AG09309 - H3K4me3 - None - rep1 H3K4me3 GSM945168
80 wgEncodeUwHistoneAg09309H3k4me3StdAlnRep2.sga AG09309 - H3K4me3 - None - rep2 H3K4me3 GSM945168
81 wgEncodeUwHistoneAg09319H3k4me3StdAlnRep1.sga AG09319 - H3K4me3 - None - rep1 H3K4me3 GSM945166
82 wgEncodeUwHistoneAg09319H3k4me3StdAlnRep2.sga AG09319 - H3K4me3 - None - rep2 H3K4me3 GSM945166
83 wgEncodeUwHistoneAg10803H3k4me3StdAlnRep1.sga AG10803 - H3K4me3 - None - rep1 H3K4me3 GSM945172
84 wgEncodeUwHistoneAg10803H3k4me3StdAlnRep2.sga AG10803 - H3K4me3 - None - rep2 H3K4me3 GSM945172
85 wgEncodeUwHistoneAoafH3k4me3StdAlnRep1.sga AoAF - H3K4me3 - None - rep1 H3K4me3 GSM945170
86 wgEncodeUwHistoneAoafH3k4me3StdAlnRep2.sga AoAF - H3K4me3 - None - rep2 H3K4me3 GSM945170
87 wgEncodeUwHistoneBe2cH3k04me3StdAlnRep1.sga BE2_C - H3K4me3 - None - rep1 H3K4me3 GSM945241
88 wgEncodeUwHistoneBe2cH3k04me3StdAlnRep2.sga BE2_C - H3K4me3 - None - rep2 H3K4me3 GSM945241
89 wgEncodeUwHistoneBjH3k4me3StdAlnRep1.sga BJ - H3K4me3 - None - rep1 H3K4me3 GSM945178
90 wgEncodeUwHistoneBjH3k4me3StdAlnRep2.sga BJ - H3K4me3 - None - rep2 H3K4me3 GSM945178
91 wgEncodeUwHistoneCd20ro01778H3k04me3StdAlnRep1.sga CD20+_RO01778 - H3K4me3 - None - rep1 H3K4me3 GSM945229
92 wgEncodeUwHistoneCd20ro01778H3k04me3StdAlnRep2.sga CD20+_RO01778 - H3K4me3 - None - rep2 H3K4me3 GSM945229
93 wgEncodeUwHistoneCd20ro01794H3k04me3StdAlnRep3.sga CD20+_RO01794 - H3K4me3 - None - rep3 H3K4me3 GSM945198
94 wgEncodeUwHistoneCaco2H3k4me3StdAlnRep1.sga Caco-2 - H3K4me3 - None - rep1 H3K4me3 GSM945162
95 wgEncodeUwHistoneCaco2H3k4me3StdAlnRep2.sga Caco-2 - H3K4me3 - None - rep2 H3K4me3 GSM945162
96 wgEncodeUwHistoneGm06990H3k4me3StdAlnRep1.sga GM06990 - H3K4me3 - None - rep1 H3K4me3 GSM945179
97 wgEncodeUwHistoneGm06990H3k4me3StdAlnRep2.sga GM06990 - H3K4me3 - None - rep2 H3K4me3 GSM945179
98 wgEncodeUwHistoneGm12864H3k04me3StdAlnRep1.sga GM12864 - H3K4me3 - None - rep1 H3K4me3 GSM945296
99 wgEncodeUwHistoneGm12864H3k04me3StdAlnRep2.sga GM12864 - H3K4me3 - None - rep2 H3K4me3 GSM945296
100 wgEncodeUwHistoneGm12865H3k04me3StdAlnRep1.sga GM12865 - H3K4me3 - None - rep1 H3K4me3 GSM945295
101 wgEncodeUwHistoneGm12865H3k04me3StdAlnRep2.sga GM12865 - H3K4me3 - None - rep2 H3K4me3 GSM945295
102 wgEncodeUwHistoneGm12866H3k04me3StdAlnRep1.sga GM12866 - H3K4me3 - None - rep1 H3K4me3 GSM945220
103 wgEncodeUwHistoneGm12875H3k04me3StdAlnRep1.sga GM12875 - H3K4me3 - None - rep1 H3K4me3 GSM945221
104 wgEncodeUwHistoneGm12878H3k4me3StdAlnRep1.sga GM12878 - H3K4me3 - None - rep1 H3K4me3 GSM945188
105 wgEncodeUwHistoneGm12878H3k4me3StdAlnRep2.sga GM12878 - H3K4me3 - None - rep2 H3K4me3 GSM945188
106 wgEncodeUwHistoneH7esH3k04me3StdAlnRep1.sga H7-hESC - H3K4me3 - diffProtA_5d - rep1 H3K4me3
107 wgEncodeUwHistoneH7esH3k04me3StdAlnRep2.sga H7-hESC - H3K4me3 - diffProtA_14d - rep2 H3K4me3
108 wgEncodeUwHistoneH7esH3k04me3StdDiffa14dAlnRep1.sga H7-hESC - H3K4me3 - diffProtA_14d - rep1 H3K4me3 GSM945321
109 wgEncodeUwHistoneH7esH3k04me3StdDiffa14dAlnRep2.sga H7-hESC - H3K4me3 - diffProtA_14d - rep2 H3K4me3 GSM945321
110 wgEncodeUwHistoneH7esH3k04me3StdDiffa2dAlnRep1.sga H7-hESC - H3K4me3 - diffProtA_2d - rep1 H3K4me3 GSM945191
111 wgEncodeUwHistoneH7esH3k04me3StdDiffa2dAlnRep2.sga H7-hESC - H3K4me3 - diffProtA_2d - rep2 H3K4me3 GSM945191
112 wgEncodeUwHistoneH7esH3k04me3StdDiffa5dAlnRep1.sga H7-hESC - H3K4me3 - diffProtA_5d - rep1 H3K4me3 GSM945322
113 wgEncodeUwHistoneH7esH3k04me3StdDiffa5dAlnRep2.sga H7-hESC - H3K4me3 - diffProtA_5d - rep2 H3K4me3 GSM945322
114 wgEncodeUwHistoneH7esH3k04me3StdDiffa9dAlnRep1.sga H7-hESC - H3K4me3 - diffProtA_9d - rep1 H3K4me3 GSM945190
115 wgEncodeUwHistoneH7esH3k04me3StdDiffa9dAlnRep2.sga H7-hESC - H3K4me3 - diffProtA_9d - rep2 H3K4me3 GSM945190
116 wgEncodeUwHistoneH7esH3k4me3StdAlnRep1.sga H7-hESC - H3K4me3 - None - rep1 H3K4me3 GSM945185
117 wgEncodeUwHistoneH7esH3k4me3StdAlnRep2.sga H7-hESC - H3K4me3 - None - rep2 H3K4me3 GSM945185
118 wgEncodeUwHistoneHaspH3k4me3StdAlnRep1.sga HA-sp - H3K4me3 - None - rep1 H3K4me3 GSM945249
119 wgEncodeUwHistoneHaspH3k4me3StdAlnRep2.sga HA-sp - H3K4me3 - None - rep2 H3K4me3 GSM945249
120 wgEncodeUwHistoneHacH3k04me3StdAlnRep1.sga HAc - H3K4me3 - None - rep1 H3K4me3 GSM945242
121 wgEncodeUwHistoneHacH3k04me3StdAlnRep2.sga HAc - H3K4me3 - None - rep2 H3K4me3 GSM945242
122 wgEncodeUwHistoneHbmecH3k4me3StdAlnRep1.sga HBMEC - H3K4me3 - None - rep1 H3K4me3 GSM945163
123 wgEncodeUwHistoneHbmecH3k4me3StdAlnRep2.sga HBMEC - H3K4me3 - None - rep2 H3K4me3 GSM945163
124 wgEncodeUwHistoneHcfH3k4me3StdAlnRep1.sga HCF - H3K4me3 - None - rep1 H3K4me3 GSM945312
125 wgEncodeUwHistoneHcfH3k4me3StdAlnRep2.sga HCF - H3K4me3 - None - rep2 H3K4me3 GSM945312
126 wgEncodeUwHistoneHcfaaH3k4me3StdAlnRep1.sga HCFaa - H3K4me3 - None - rep1 H3K4me3 GSM945310
127 wgEncodeUwHistoneHcmH3k4me3StdAlnRep1.sga HCM - H3K4me3 - None - rep1 H3K4me3 GSM945308
128 wgEncodeUwHistoneHcmH3k4me3StdAlnRep2.sga HCM - H3K4me3 - None - rep2 H3K4me3 GSM945308
129 wgEncodeUwHistoneHcpeH3k4me3StdAlnRep1.sga HCPEpiC - H3K4me3 - None - rep1 H3K4me3 GSM945306
130 wgEncodeUwHistoneHcpeH3k4me3StdAlnRep2.sga HCPEpiC - H3K4me3 - None - rep2 H3K4me3 GSM945306
131 wgEncodeUwHistoneHct116H3k4me3StdAlnRep1.sga HCT-116 - H3K4me3 - None - rep1 H3K4me3 GSM945304
132 wgEncodeUwHistoneHct116H3k4me3StdAlnRep2.sga HCT-116 - H3K4me3 - None - rep2 H3K4me3 GSM945304
133 wgEncodeUwHistoneHeeH3k4me3StdAlnRep1.sga HEEpiC - H3K4me3 - None - rep1 H3K4me3 GSM945286
134 wgEncodeUwHistoneHeeH3k4me3StdAlnRep2.sga HEEpiC - H3K4me3 - None - rep2 H3K4me3 GSM945286
135 wgEncodeUwHistoneHek293H3k4me3StdAlnRep1.sga HEK293 - H3K4me3 - None - rep1 H3K4me3 GSM945288
136 wgEncodeUwHistoneHek293H3k4me3StdAlnRep2.sga HEK293 - H3K4me3 - None - rep2 H3K4me3 GSM945288
137 wgEncodeUwHistoneHffH3k04me3StdAlnRep1.sga HFF - H3K4me3 - None - rep1 H3K4me3 GSM945218
138 wgEncodeUwHistoneHffmycH3k04me3StdAlnRep1.sga HFF-Myc - H3K4me3 - None - rep1 H3K4me3 GSM945239
139 wgEncodeUwHistoneHffmycH3k04me3StdAlnRep2.sga HFF-Myc - H3K4me3 - None - rep2 H3K4me3 GSM945239
140 wgEncodeUwHistoneHl60H3k4me3StdAlnRep1.sga HL-60 - H3K4me3 - None - rep1 H3K4me3 GSM945222
141 wgEncodeUwHistoneHl60H3k4me3StdAlnRep2.sga HL-60 - H3K4me3 - None - rep2 H3K4me3 GSM945222
142 wgEncodeUwHistoneHmecH3k4me3StdAlnRep1.sga HMEC - H3K4me3 - None - rep1 H3K4me3 GSM945159
143 wgEncodeUwHistoneHmecH3k4me3StdAlnRep2.sga HMEC - H3K4me3 - None - rep2 H3K4me3 GSM945159
144 wgEncodeUwHistoneHmfH3k4me3StdAlnRep1.sga HMF - H3K4me3 - None - rep1 H3K4me3 GSM945290
145 wgEncodeUwHistoneHmfH3k4me3StdAlnRep2.sga HMF - H3K4me3 - None - rep2 H3K4me3 GSM945290
146 wgEncodeUwHistoneHpafH3k4me3StdAlnRep1.sga HPAF - H3K4me3 - None - rep1 H3K4me3 GSM945292
147 wgEncodeUwHistoneHpafH3k4me3StdAlnRep2.sga HPAF - H3K4me3 - None - rep2 H3K4me3 GSM945292
148 wgEncodeUwHistoneHpfH3k4me3StdAlnRep1.sga HPF - H3K4me3 - None - rep1 H3K4me3 GSM945284
149 wgEncodeUwHistoneHpfH3k4me3StdAlnRep2.sga HPF - H3K4me3 - None - rep2 H3K4me3 GSM945284
150 wgEncodeUwHistoneHreH3k4me3StdAlnRep1.sga HRE - H3K4me3 - None - rep1 H3K4me3 GSM945276
151 wgEncodeUwHistoneHreH3k4me3StdAlnRep2.sga HRE - H3K4me3 - None - rep2 H3K4me3 GSM945276
152 wgEncodeUwHistoneHrpeH3k4me3StdAlnRep1.sga HRPEpiC - H3K4me3 - None - rep1 H3K4me3 GSM945271
153 wgEncodeUwHistoneHrpeH3k4me3StdAlnRep2.sga HRPEpiC - H3K4me3 - None - rep2 H3K4me3 GSM945271
154 wgEncodeUwHistoneHuvecH3k4me3StdAlnRep1.sga HUVEC - H3K4me3 - None - rep1 H3K4me3 GSM945181
155 wgEncodeUwHistoneHuvecH3k4me3StdAlnRep2.sga HUVEC - H3K4me3 - None - rep2 H3K4me3 GSM945181
156 wgEncodeUwHistoneHvmfH3k4me3StdAlnRep1.sga HVMF - H3K4me3 - None - rep1 H3K4me3 GSM945273
157 wgEncodeUwHistoneHvmfH3k4me3StdAlnRep2.sga HVMF - H3K4me3 - None - rep2 H3K4me3 GSM945273
158 wgEncodeUwHistoneHelas3H3k4me3StdAlnRep1.sga HeLa-S3 - H3K4me3 - None - rep1 H3K4me3 GSM945201
159 wgEncodeUwHistoneHelas3H3k4me3StdAlnRep2.sga HeLa-S3 - H3K4me3 - None - rep2 H3K4me3 GSM945201
160 wgEncodeUwHistoneHepg2H3k4me3StdAlnRep1.sga HepG2 - H3K4me3 - None - rep1 H3K4me3 GSM945182
161 wgEncodeUwHistoneHepg2H3k4me3StdAlnRep2.sga HepG2 - H3K4me3 - None - rep2 H3K4me3 GSM945182
162 wgEncodeUwHistoneJurkatH3k4me3StdAlnRep1.sga Jurkat - H3K4me3 - None - rep1 H3K4me3 GSM945267
163 wgEncodeUwHistoneJurkatH3k4me3StdAlnRep2.sga Jurkat - H3K4me3 - None - rep2 H3K4me3 GSM945267
164 wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5AlnRep1.sga K562 - H3K4me3 - ZNF_knockout_2C10_C5 - rep1 H3K4me3 GSM945297
165 wgEncodeUwHistoneK562H3k04me3StdZnf2c10c5AlnRep2.sga K562 - H3K4me3 - ZNF_knockout_2C10_C5 - rep2 H3K4me3 GSM945297
166 wgEncodeUwHistoneK562H3k04me3StdZnf4c50c4AlnRep1.sga K562 - H3K4me3 - ZNF_knockout_4C50_C4 - rep1 H3K4me3 GSM945299
167 wgEncodeUwHistoneK562H3k04me3StdZnf4c50c4AlnRep2.sga K562 - H3K4me3 - ZNF_knockout_4C50_C4 - rep2 H3K4me3 GSM945299
168 wgEncodeUwHistoneK562H3k04me3StdZnfa41c6AlnRep1.sga K562 - H3K4me3 - ZNF_knockout_A4.1-C6 - rep1 H3K4me3 GSM945298
169 wgEncodeUwHistoneK562H3k04me3StdZnfa41c6AlnRep2.sga K562 - H3K4me3 - ZNF_knockout_A4.1-C6 - rep2 H3K4me3 GSM945298
170 wgEncodeUwHistoneK562H3k04me3StdZnff41b2AlnRep1.sga K562 - H3K4me3 - ZNF_knockout_F4.1-B2 - rep1 H3K4me3 GSM945278
171 wgEncodeUwHistoneK562H3k04me3StdZnff41b2AlnRep2.sga K562 - H3K4me3 - ZNF_knockout_F4.1-B2 - rep2 H3K4me3 GSM945278
172 wgEncodeUwHistoneK562H3k04me3StdZnfp5AlnRep1.sga K562 - H3K4me3 - ZNF_knockout_P5 - rep1 H3K4me3 GSM945279
173 wgEncodeUwHistoneK562H3k04me3StdZnfp5AlnRep2.sga K562 - H3K4me3 - ZNF_knockout_P5 - rep2 H3K4me3 GSM945279
174 wgEncodeUwHistoneK562H3k4me3StdAlnRep1.sga K562 - H3K4me3 - None - rep1 H3K4me3 GSM945165
175 wgEncodeUwHistoneK562H3k4me3StdAlnRep2.sga K562 - H3K4me3 - None - rep2 H3K4me3 GSM945165
176 wgEncodeUwHistoneLncapH3k04me3StdAlnRep1.sga LNCaP - H3K4me3 - None - rep1 H3K4me3 GSM945240
177 wgEncodeUwHistoneLncapH3k04me3StdAlnRep2.sga LNCaP - H3K4me3 - None - rep2 H3K4me3 GSM945240
178 wgEncodeUwHistoneMcf7H3k04me3StdAlnRep2.sga MCF-7 - H3K4me3 - None - rep2 H3K4me3 GSM945269
179 wgEncodeUwHistoneMcf7H3k4me3StdAlnRep1.sga MCF-7 - H3K4me3 - None - rep1 H3K4me3 GSM945269
180 wgEncodeUwHistoneMonocd14ro1746H3k04me3StdAlnRep1.sga Monocytes-CD14+_RO01746 - H3K4me3 - None - rep1 H3K4me3 GSM945225
181 wgEncodeUwHistoneNb4H3k4me3StdAlnRep1.sga NB4 - H3K4me3 - None - rep1 H3K4me3 GSM945275
182 wgEncodeUwHistoneNhdfneoH3k4me3StdAlnRep1.sga NHDF-neo - H3K4me3 - None - rep1 H3K4me3 GSM945251
183 wgEncodeUwHistoneNhdfneoH3k4me3StdAlnRep2.sga NHDF-neo - H3K4me3 - None - rep2 H3K4me3 GSM945251
184 wgEncodeUwHistoneNhekH3k4me3StdAlnRep1.sga NHEK - H3K4me3 - None - rep1 H3K4me3 GSM945175
185 wgEncodeUwHistoneNhekH3k4me3StdAlnRep2.sga NHEK - H3K4me3 - None - rep2 H3K4me3 GSM945175
186 wgEncodeUwHistoneNhlfH3k04me3StdAlnRep1.sga NHLF - H3K4me3 - None - rep1 H3K4me3 GSM945262
187 wgEncodeUwHistoneNhlfH3k04me3StdAlnRep2.sga NHLF - H3K4me3 - None - rep2 H3K4me3 GSM945262
188 wgEncodeUwHistonePanc1H3k04me3StdAlnRep1.sga PANC-1 - H3K4me3 - None - rep1 H3K4me3 GSM945261
189 wgEncodeUwHistonePanc1H3k04me3StdAlnRep2.sga PANC-1 - H3K4me3 - None - rep2 H3K4me3 GSM945261
190 wgEncodeUwHistoneRptecH3k04me3StdAlnRep1.sga RPTEC - H3K4me3 - None - rep1 H3K4me3 GSM945216
191 wgEncodeUwHistoneRptecH3k04me3StdAlnRep2.sga RPTEC - H3K4me3 - None - rep2 H3K4me3 GSM945216
192 wgEncodeUwHistoneSaecH3k4me3StdAlnRep1.sga SAEC - H3K4me3 - None - rep1 H3K4me3 GSM945199
193 wgEncodeUwHistoneSaecH3k4me3StdAlnRep2.sga SAEC - H3K4me3 - None - rep2 H3K4me3 GSM945199
194 wgEncodeUwHistoneSknmcH3k04me3StdAlnRep1.sga SK-N-MC - H3K4me3 - None - rep1 H3K4me3 GSM945264
195 wgEncodeUwHistoneSknmcH3k04me3StdAlnRep2.sga SK-N-MC - H3K4me3 - None - rep2 H3K4me3 GSM945264
196 wgEncodeUwHistoneSknshraH3k4me3StdAlnRep1.sga SK-N-SH_RA - H3K4me3 - None - rep1 H3K4me3 GSM945202
197 wgEncodeUwHistoneSknshraH3k4me3StdAlnRep2.sga SK-N-SH_RA - H3K4me3 - None - rep2 H3K4me3 GSM945202
198 wgEncodeUwHistoneSkmcH3k04me3StdAlnRep1.sga SKMC - H3K4me3 - None - rep1 H3K4me3 GSM945214
199 wgEncodeUwHistoneSkmcH3k04me3StdAlnRep2.sga SKMC - H3K4me3 - None - rep2 H3K4me3 GSM945214
200 wgEncodeUwHistoneWerirb1H3k04me3StdAlnRep1.sga WERI-Rb-1 - H3K4me3 - None - rep1 H3K4me3 GSM945263
201 wgEncodeUwHistoneWerirb1H3k04me3StdAlnRep2.sga WERI-Rb-1 - H3K4me3 - None - rep2 H3K4me3 GSM945263
202 wgEncodeUwHistoneWi38H3k04me3OhtamStdAlnRep1.sga WI-38 - H3K4me3 - 4OHTAM_20nM_72hr - rep1 H3K4me3 GSM945215
203 wgEncodeUwHistoneWi38H3k04me3OhtamStdAlnRep2.sga WI-38 - H3K4me3 - 4OHTAM_20nM_72hr - rep2 H3K4me3 GSM945215
204 wgEncodeUwHistoneWi38H3k04me3StdAlnRep1.sga WI-38 - H3K4me3 - None - rep1 H3K4me3 GSM945265
205 wgEncodeUwHistoneWi38H3k04me3StdAlnRep2.sga WI-38 - H3K4me3 - None - rep2 H3K4me3 GSM945265
206 wgEncodeUwHistoneAg04450H3k09me3StdAlnRep1.sga AG04450 - H3K9me3 - None - rep1 H3K9me3 GSM1010914
207 wgEncodeUwHistoneAg04450H3k09me3StdAlnRep2.sga AG04450 - H3K9me3 - None - rep2 H3K9me3 GSM1010914
208 wgEncodeUwHistoneA549InputStdAlnRep1.sga A549 - Input - None - rep1 Input GSM945243
209 wgEncodeUwHistoneAg04449InputStdAlnRep1.sga AG04449 - Input - None - rep1 Input GSM945176
210 wgEncodeUwHistoneAg04450InputStdAlnRep1.sga AG04450 - Input - None - rep1 Input GSM945169
211 wgEncodeUwHistoneAg09309InputStdAlnRep1.sga AG09309 - Input - None - rep1 Input GSM945167
212 wgEncodeUwHistoneAg09319InputStdAlnRep1.sga AG09319 - Input - None - rep1 Input GSM945173
213 wgEncodeUwHistoneAg10803InputStdAlnRep1.sga AG10803 - Input - None - rep1 Input GSM945171
214 wgEncodeUwHistoneAoafInputStdAlnRep1.sga AoAF - Input - None - rep1 Input GSM945164
215 wgEncodeUwHistoneBe2cInputStdAlnRep1.sga BE2_C - Input - None - rep1 Input GSM945283
216 wgEncodeUwHistoneBjInputStdAlnRep1.sga BJ - Input - None - rep1 Input GSM945235
217 wgEncodeUwHistoneCd20ro01778InputStdAlnRep1.sga CD20+_RO01778 - Input - None - rep1 Input GSM945197
218 wgEncodeUwHistoneCd20ro01794InputStdAlnRep1.sga CD20+_RO01794 - Input - None - rep1 Input GSM945195
219 wgEncodeUwHistoneCaco2InputStdAlnRep1.sga Caco-2 - Input - None - rep1 Input GSM945236
220 wgEncodeUwHistoneGm06990InputStdAlnRep1.sga GM06990 - Input - None - rep1 Input GSM945237
221 wgEncodeUwHistoneGm12864InputStdAlnRep1.sga GM12864 - Input - None - rep1 Input GSM945238
222 wgEncodeUwHistoneGm12865InputStdAlnRep1.sga GM12865 - Input - None - rep1 Input GSM945234
223 wgEncodeUwHistoneGm12875InputStdAlnRep1.sga GM12875 - Input - None - rep1 Input GSM945260
224 wgEncodeUwHistoneGm12878InputStdAlnRep1.sga GM12878 - Input - None - rep1 Input GSM945259
225 wgEncodeUwHistoneH7esInputStdAlnRep1.sga H7-hESC - Input - None - rep1 Input GSM945186
226 wgEncodeUwHistoneH7esInputStdDiffa14dAlnRep1.sga H7-hESC - Input - diffProtA_14d - rep1 Input GSM945319
227 wgEncodeUwHistoneH7esInputStdDiffa2dAlnRep1.sga H7-hESC - Input - diffProtA_2d - rep1 Input GSM945189
228 wgEncodeUwHistoneH7esInputStdDiffa5dAlnRep1.sga H7-hESC - Input - diffProtA_5d - rep1 Input GSM945194
229 wgEncodeUwHistoneH7esInputStdDiffa9dAlnRep1.sga H7-hESC - Input - diffProtA_9d - rep1 Input GSM945193
230 wgEncodeUwHistoneHaspInputStdAlnRep1.sga HA-sp - Input - None - rep1 Input GSM945248
231 wgEncodeUwHistoneHacInputStdAlnRep1.sga HAc - Input - None - rep1 Input GSM945227
232 wgEncodeUwHistoneHbmecInputStdAlnRep1.sga HBMEC - Input - None - rep1 Input GSM945311
233 wgEncodeUwHistoneHcfInputStdAlnRep1.sga HCF - Input - None - rep1 Input GSM945309
234 wgEncodeUwHistoneHcfaaInputStdAlnRep1.sga HCFaa - Input - None - rep1 Input GSM945307
235 wgEncodeUwHistoneHcmInputStdAlnRep1.sga HCM - Input - None - rep1 Input GSM945305
236 wgEncodeUwHistoneHcpeInputStdAlnRep1.sga HCPEpiC - Input - None - rep1 Input GSM945303
237 wgEncodeUwHistoneHct116InputStdAlnRep1.sga HCT-116 - Input - None - rep1 Input GSM945287
238 wgEncodeUwHistoneHeeInputStdAlnRep1.sga HEEpiC - Input - None - rep1 Input GSM945289
239 wgEncodeUwHistoneHek293InputStdAlnRep1.sga HEK293 - Input - None - rep1 Input GSM945256
240 wgEncodeUwHistoneHffInputStdAlnRep1.sga HFF - Input - None - rep1 Input GSM945219
241 wgEncodeUwHistoneHffmycInputStdAlnRep1.sga HFF-Myc - Input - None - rep1 Input GSM945281
242 wgEncodeUwHistoneHl60InputStdAlnRep1.sga HL-60 - Input - None - rep1 Input GSM945255
243 wgEncodeUwHistoneHmecInputStdAlnRep1.sga HMEC - Input - None - rep1 Input GSM945258
244 wgEncodeUwHistoneHmfInputStdAlnRep1.sga HMF - Input - None - rep1 Input GSM945293
245 wgEncodeUwHistoneHpafInputStdAlnRep1.sga HPAF - Input - None - rep1 Input GSM945285
246 wgEncodeUwHistoneHpfInputStdAlnRep1.sga HPF - Input - None - rep1 Input GSM945270
247 wgEncodeUwHistoneHreInputStdAlnRep1.sga HRE - Input - None - rep1 Input GSM945257
248 wgEncodeUwHistoneHrpeInputStdAlnRep1.sga HRPEpiC - Input - None - rep1 Input GSM945272
249 wgEncodeUwHistoneHuvecInputStdAlnRep1.sga HUVEC - Input - None - rep1 Input GSM945254
250 wgEncodeUwHistoneHvmfInputStdAlnRep1.sga HVMF - Input - None - rep1 Input GSM945266
251 wgEncodeUwHistoneHelas3InputStdAlnRep1.sga HeLa-S3 - Input - None - rep1 Input GSM945253
252 wgEncodeUwHistoneHepg2InputStdAlnRep1.sga HepG2 - Input - None - rep1 Input GSM945291
253 wgEncodeUwHistoneJurkatInputStdAlnRep1.sga Jurkat - Input - None - rep1 Input GSM945268
254 wgEncodeUwHistoneK562InputStdAlnRep1.sga K562 - Input - None - rep1 Input GSM945294
255 wgEncodeUwHistoneLncapInputStdAlnRep1.sga LNCaP - Input - None - rep1 Input GSM945282
256 wgEncodeUwHistoneMcf7InputStdAlnRep1.sga MCF-7 - Input - None - rep1 Input GSM945274
257 wgEncodeUwHistoneMonocd14ro1746InputStdAlnRep1.sga Monocytes-CD14+_RO01746 - Input - None - rep1 Input GSM945224
258 wgEncodeUwHistoneNb4InputStdAlnRep1.sga NB4 - Input - None - rep1 Input GSM945252
259 wgEncodeUwHistoneNhdfneoInputStdAlnRep1.sga NHDF-neo - Input - None - rep1 Input GSM945250
260 wgEncodeUwHistoneNhekInputStdAlnRep1.sga NHEK - Input - None - rep1 Input GSM945313
261 wgEncodeUwHistoneNhlfInputStdAlnRep1.sga NHLF - Input - None - rep1 Input GSM945280
262 wgEncodeUwHistonePanc1InputStdAlnRep1.sga PANC-1 - Input - None - rep1 Input GSM945246
263 wgEncodeUwHistoneRptecInputStdAlnRep1.sga RPTEC - Input - None - rep1 Input GSM945217
264 wgEncodeUwHistoneSaecInputStdAlnRep1.sga SAEC - Input - None - rep1 Input GSM945314
265 wgEncodeUwHistoneSknmcInputStdAlnRep1.sga SK-N-MC - Input - None - rep1 Input GSM945247
266 wgEncodeUwHistoneSknshraInputStdAlnRep1.sga SK-N-SH_RA - Input - None - rep1 Input GSM945317
267 wgEncodeUwHistoneSkmcInputStdAlnRep1.sga SKMC - Input - None - rep1 Input GSM945161
268 wgEncodeUwHistoneWerirb1InputStdAlnRep1.sga WERI-Rb-1 - Input - None - rep1 Input GSM945318
269 wgEncodeUwHistoneWi38InputOhtamStdAlnRep1.sga WI-38 - Input - 4OHTAM_20nM_72hr - rep1 Input GSM945223
270 wgEncodeUwHistoneWi38InputStdAlnRep1.sga WI-38 - Input - None - rep1 Input GSM945245

Technical Notes

BAM files were downloaded from UCSC and converted in sga format using bamToBed (SamTools) and bed2sga (ChIP-seq).

References

  1. Thurman RE, Rynes E, Humbert R, Vierstra J et al.
    The accessible chromatin landscape of the human genome.
    Nature 2012 Sep 6;489(7414):75-82-90
    PMID: 22955617

  2. GEO series GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington.