Euskirchen 2011, Genome-wide profile of the SWI/SNF chromatin remodeling complex

Description

Chip-Seq against BAF170, BAF155, Brg1 and Ini1 proteins of the chromatin remodelling complex SWI/SNF in HeLa S3 cells grown under normal conditions.

Source

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM601401.sga HeLa S3 cells|BAF170 BAF170 GSM601401
2 GSM601400.sga HeLa S3 cells|BAF155 BAF155 GSM601400
3 GSM601399.sga HeLa S3 cells|Brg1 Brg1 GSM601399
4 GSM601398.sga HeLa S3 cells|Ini1 Ini1 GSM601398

Technical Notes

SRA data were mapped to the hg19 genome using Bowtie v0.12.8. SAM files were then converted into bam using samtools v0.1.14 and to bed using bamToBed v2.12.0 (bedtools). SGA conversion was carried out using bed2sga.pl (ChIP-Seq v. 1.5.2).

References

Last update: 19 Jan 2016