Kelly 2012, Nucleosome mapping in IMR90 cells.


Nucleosome occupancy data from IMR90 fibroblast cells.



From H. sapiens (Feb 2009 GRCh37/hg19).

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM543311.sga IMR90|MNase MNase GSM543311

Note on samples:

The file GSM543311.sga has been generated by concatenating all the files available on GEO for this GSM entry.
Also, be aware that we could not acertain the nature of these data as the descriptions given in the article and those find in GEO do not match.

Technical Notes

bam files were converted to sam using samtools v0.1.14, unmapped reads were discarded and sam files were converted back to bam using samtools v0.1.14. and to bed using bamToBed v2.12.0 (bedtools). Files were lifted over to hg19 genome assembly using UCSC LiftOver tool and SGA conversion was carried out using (ChIP-Seq v. 1.5.2).


Last update: 16 Mar 2017