Adult breast.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1127089_UCSF-UBC.Breast_Fibroblast_Primary_Cells.Input.RM071.sga Breast Fibroblast Primary Cells|Input Input GSM1127089
2 GSM693278_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K27me3.RM080.sga Breast Luminal Epithelial Cells|H3K27me3 H3K27me3 GSM693278
3 GSM669597_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K36me3.RM080.sga Breast Luminal Epithelial Cells|H3K36me3 H3K36me3 GSM669597
4 GSM669595_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K4me1.RM080.sga Breast Luminal Epithelial Cells|H3K4me1 H3K4me1 GSM669595
5 GSM669596_UCSF-UBC.Breast_Luminal_Epithelial_Cells.H3K9me3.RM080.sga Breast Luminal Epithelial Cells|H3K9me3 H3K9me3 GSM669596
6 GSM959124_UCSF-UBC.Breast_Luminal_Epithelial_Cells.Input.RM080.sga Breast Luminal Epithelial Cells|Input Input GSM959124
7 GSM613872_UCSF-UBC.Breast_Myoepithelial_Cells.H3K27me3.RM066.sga Breast Myoepithelial Cells|H3K27me3|rep 1 H3K27me3 GSM613872
8 GSM613887_UCSF-UBC.Breast_Myoepithelial_Cells.H3K27me3.RM080.sga Breast Myoepithelial Cells|H3K27me3|rep 2 H3K27me3 GSM613887
9 GSM613873_UCSF-UBC.Breast_Myoepithelial_Cells.H3K36me3.RM066.sga Breast Myoepithelial Cells|H3K36me3|rep 1 H3K36me3 GSM613873
10 GSM613888_UCSF-UBC.Breast_Myoepithelial_Cells.H3K36me3.RM080.sga Breast Myoepithelial Cells|H3K36me3|rep 2 H3K36me3 GSM613888
11 GSM613870_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me1.RM066.sga Breast Myoepithelial Cells|H3K4me1|rep 1 H3K4me1 GSM613870
12 GSM613885_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me1.RM080.sga Breast Myoepithelial Cells|H3K4me1|rep 2 H3K4me1 GSM613885
13 GSM613869_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me3.RM066.sga Breast Myoepithelial Cells|H3K4me3|rep 1 H3K4me3 GSM613869
14 GSM693277_UCSF-UBC.Breast_Myoepithelial_Cells.H3K4me3.RM080.sga Breast Myoepithelial Cells|H3K4me3|rep 2 H3K4me3 GSM693277
15 GSM613889_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9ac.RM080.sga Breast Myoepithelial Cells|H3K9ac|rep 1 H3K9ac GSM613889
16 GSM693276_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9ac.RM066.sga Breast Myoepithelial Cells|H3K9ac|rep 2 H3K9ac GSM693276
17 GSM613871_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9me3.RM066.sga Breast Myoepithelial Cells|H3K9me3|rep 1 H3K9me3 GSM613871
18 GSM613886_UCSF-UBC.Breast_Myoepithelial_Cells.H3K9me3.RM080.sga Breast Myoepithelial Cells|H3K9me3|rep 2 H3K9me3 GSM613886
19 GSM613891_UCSF-UBC.Breast_Myoepithelial_Cells.Input.RM066.sga Breast Myoepithelial Cells|Input|rep 1 Input GSM613891
20 GSM613897_UCSF-UBC.Breast_Myoepithelial_Cells.Input.RM080.sga Breast Myoepithelial Cells|Input|rep 2 Input GSM613897
21 GSM669594_UCSF-UBC.Breast_vHMEC.H3K27me3.RM035.sga Breast vHMEC|H3K27me3 H3K27me3 GSM669594
22 GSM693275_UCSF-UBC.Breast_vHMEC.H3K36me3.RM035.sga Breast vHMEC|H3K36me3 H3K36me3 GSM693275
23 GSM613868_UCSF-UBC.Breast_vHMEC.H3K4me1.RM035.HS1994.sga Breast vHMEC|H3K4me1|rep 1 H3K4me1 GSM613868
24 GSM613876_UCSF-UBC.Breast_vHMEC.H3K4me1.RM035.HS2618.sga Breast vHMEC|H3K4me1|rep 2 H3K4me1 GSM613876
25 GSM613874_UCSF-UBC.Breast_vHMEC.H3K4me3.RM035.HS2615.sga Breast vHMEC|H3K4me3 H3K4me3 GSM613874
26 GSM613875_UCSF-UBC.Breast_vHMEC.H3K9me3.RM035.HS2617.sga Breast vHMEC|H3K9me3 H3K9me3 GSM613875
27 GSM613890_UCSF-UBC.Breast_vHMEC.Input.RM035.HS1995.sga Breast vHMEC|Input|rep 1 Input GSM613890
28 GSM613892_UCSF-UBC.Breast_vHMEC.Input.RM035.HS2620.sga Breast vHMEC|Input|rep 2 Input GSM613892

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1024609_UW.Breast_vHMEC.Digital_Genomic_Footprinting.RM035.DGF.DS18406.sga Breast vHMEC|DNase-HS DNase-HS GSM1024609
2 GSM753973_UW.Breast_vHMEC.ChromatinAccessibility.RM035.DS18406.sga Breast vHMEC|DNase-seq|rep 1 DNase-seq GSM753973
3 GSM753974_UW.Breast_vHMEC.ChromatinAccessibility.RM035.DS18438.sga Breast vHMEC|DNase-seq|rep 2 DNase-seq GSM753974

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files