Embryonic Stem Cells.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM537627_BI.ES-I3.H3K27me3.Solexa-12678.sga ES-I3|H3K27me3|rep 1 H3K27me3 GSM537627
2 GSM537648_BI.ES-I3.H3K27me3.Solexa-10213-15380.sga ES-I3|H3K27me3|rep 2 H3K27me3 GSM537648
3 GSM537669_BI.ES-I3.H3K36me3.Solexa-15381.sga ES-I3|H3K36me3|rep 1 H3K36me3 GSM537669
4 GSM537672_BI.ES-I3.H3K36me3.Solexa-16493.sga ES-I3|H3K36me3|rep 2 H3K36me3 GSM537672
5 GSM537668_BI.ES-I3.H3K4me1.Solexa-15382.sga ES-I3|H3K4me1|rep 1 H3K4me1 GSM537668
6 GSM772789_BI.ES-I3.H3K4me1.Lib_MC_20100211_02--ChIP_MC_20100208_02_hES_I3_TESR_H3K4Me1.sga ES-I3|H3K4me1|rep 2 H3K4me1 GSM772789
7 GSM537626_BI.ES-I3.H3K4me3.Solexa-12681.sga ES-I3|H3K4me3|rep 1 H3K4me3 GSM537626
8 GSM537665_BI.ES-I3.H3K4me3.Solexa-15474.sga ES-I3|H3K4me3|rep 2 H3K4me3 GSM537665
9 GSM537624_BI.ES-I3.H3K9ac.Solexa-12682.sga ES-I3|H3K9ac|rep 1 H3K9ac GSM537624
10 GSM537670_BI.ES-I3.H3K9ac.Solexa-15383.sga ES-I3|H3K9ac|rep 2 H3K9ac GSM537670
11 GSM537625_BI.ES-I3.H3K9me3.Solexa-12683-16494.sga ES-I3|H3K9me3|rep 1 H3K9me3 GSM537625
12 GSM537664_BI.ES-I3.H3K9me3.Solexa-15475.sga ES-I3|H3K9me3|rep 2 H3K9me3 GSM537664
13 GSM537647_BI.ES-I3.Input.Solexa-10219.sga ES-I3|Input|rep 1 WCE GSM537647
14 GSM621386_BI.ES-I3.Input.Lib_MC_20090522_07--ChIP_MC_20090519_07_hES_I3_TESR_WCE.sga ES-I3|Input|rep 2 WCE GSM621386
15 GSM537657_BI.ES-WA7.H3K27me3.Solexa-12609.sga ES-WA7|H3K27me3 H3K27me3 GSM537657
16 GSM537640_BI.ES-WA7.H3K36me3.Solexa-12610.sga ES-WA7|H3K36me3 H3K36me3 GSM537640
17 GSM537641_BI.ES-WA7.H3K4me1.Solexa-12611.sga ES-WA7|H3K4me1 H3K4me1 GSM537641
18 GSM537623_BI.ES-WA7.H3K4me3.Solexa-13062.sga ES-WA7|H3K4me3 H3K4me3 GSM537623
19 GSM669896_BI.ES-WA7.H3K9ac.Lib_MC_20100818_06--ChIP_MC_20100816_01_WA07_H3K9Ac.sga ES-WA7|H3K9ac H3K9ac GSM669896
20 GSM537639_BI.ES-WA7.H3K9me3.Solexa-12613.sga ES-WA7|H3K9me3 H3K9me3 GSM537639
21 GSM669926_BI.ES-WA7.Input.Lib_MC_20100211_05--ChIP_MC_20100208_05_WA07_WCE.sga ES-WA7|Input WCE GSM669926
22 GSM908938_UCSD.H1.H2A.Z.AY1.sga H1|H2A H2A.Z GSM908938
23 GSM602257_UCSD.H1.H2AK5ac.YL97.sga H1|H2AK5ac|rep 1 H2AK5ac GSM602257
24 GSM602258_UCSD.H1.H2AK5ac.SAK201.sga H1|H2AK5ac|rep 2 H2AK5ac GSM602258
25 GSM605295_UCSD.H1.H2BK120ac.SAK206.sga H1|H2BK120ac|rep 1 H2BK120ac GSM605295
26 GSM789280_UCSD.H1.H2BK120ac.AK146.sga H1|H2BK120ac|rep 2 H2BK120ac GSM789280
27 GSM789281_UCSD.H1.H2BK120ac.SK530.sga H1|H2BK120ac|rep 3 H2BK120ac GSM789281
28 GSM605296_UCSD.H1.H2BK12ac.YL93.sga H1|H2BK12ac|rep 1 H2BK12ac GSM605296
29 GSM605297_UCSD.H1.H2BK12ac.SAK203.sga H1|H2BK12ac|rep 2 H2BK12ac GSM605297
30 GSM605298_UCSD.H1.H2BK15ac.YL206.sga H1|H2BK15ac|rep 1 H2BK15ac GSM605298
31 GSM605299_UCSD.H1.H2BK15ac.SAK204.sga H1|H2BK15ac|rep 2 H2BK15ac GSM605299
32 GSM605300_UCSD.H1.H2BK20ac.YL207.sga H1|H2BK20ac|rep 1 H2BK20ac GSM605300
33 GSM605301_UCSD.H1.H2BK20ac.SAK205.sga H1|H2BK20ac|rep 2 H2BK20ac GSM605301
34 GSM605302_UCSD.H1.H2BK5ac.YL98.sga H1|H2BK5ac|rep 1 H2BK5ac GSM605302
35 GSM605303_UCSD.H1.H2BK5ac.SAK202.sga H1|H2BK5ac|rep 2 H2BK5ac GSM605303
36 GSM667614_UCSD.H1.H3K14ac.AK52.sga H1|H3K14ac|rep 1 H3K14ac GSM667614
37 GSM667615_UCSD.H1.H3K14ac.AK58.sga H1|H3K14ac|rep 2 H3K14ac GSM667615
38 GSM602259_UCSD.H1.H3K18ac.SAK208.sga H1|H3K18ac|rep 1 H3K18ac GSM602259
39 GSM605304_UCSD.H1.H3K18ac.LL321.sga H1|H3K18ac|rep 2 H3K18ac GSM605304
40 GSM667617_UCSD.H1.H3K23ac.AK53.sga H1|H3K23ac|rep 1 H3K23ac GSM667617
41 GSM667618_UCSD.H1.H3K23ac.AK59.sga H1|H3K23ac|rep 2 H3K23ac GSM667618
42 GSM605305_UCSD.H1.H3K23me2.YL198.sga H1|H3K23me2|rep 1 H3K23me2 GSM605305
43 GSM605306_UCSD.H1.H3K23me2.SAK210.sga H1|H3K23me2|rep 2 H3K23me2 GSM605306
44 GSM466732_UCSD.H1.H3K27ac.LL313.sga H1|H3K27ac|rep 1 H3K27ac GSM466732
45 GSM663427_UCSD.H1.H3K27ac.SAK270.sga H1|H3K27ac|rep 2 H3K27ac GSM663427
46 GSM428295_UCSF-UBC.H1.H3K27me3.H1EScd1-me3K27-A.sga H1|H3K27me3|rep 1 H3K27me3 GSM428295
47 GSM433167_BI.H1.H3K27me3.Solexa-8039.sga H1|H3K27me3|rep 2 H3K27me3 GSM433167
48 GSM434776_UCSD.H1.H3K27me3.LL241.sga H1|H3K27me3|rep 3 H3K27me3 GSM434776
49 GSM466734_UCSD.H1.H3K27me3.LL314.sga H1|H3K27me3|rep 4 H3K27me3 GSM466734
50 GSM537683_BI.H1.H3K27me3.Solexa-12523.sga H1|H3K27me3|rep 5 H3K27me3 GSM537683
51 GSM605308_UCSD.H1.H3K27me3.YL95.sga H1|H3K27me3|rep 6 H3K27me3 GSM605308
52 GSM409312_UCSD.H1.H3K36me3.LL220.sga H1|H3K36me3|rep 1 H3K36me3 GSM409312
53 GSM428296_UCSF-UBC.H1.H3K36me3.H1EScd1-me3K36-A.sga H1|H3K36me3|rep 2 H3K36me3 GSM428296
54 GSM433176_BI.H1.H3K36me3.Solexa-12524.sga H1|H3K36me3|rep 3 H3K36me3 GSM433176
55 GSM450268_UCSF-UBC.H1.H3K36me3.H1EScd2-me3K36-B.sga H1|H3K36me3|rep 4 H3K36me3 GSM450268
56 GSM466737_UCSD.H1.H3K36me3.LL160.sga H1|H3K36me3|rep 5 H3K36me3 GSM466737
57 GSM537684_BI.H1.H3K36me3.Solexa-14961.sga H1|H3K36me3|rep 6 H3K36me3 GSM537684
58 GSM605309_UCSD.H1.H3K36me3.SAK70.sga H1|H3K36me3|rep 7 H3K36me3 GSM605309
59 GSM605311_UCSD.H1.H3K4ac.SAK207.sga H1|H3K4ac|rep 1 H3K4ac GSM605311
60 GSM667624_UCSD.H1.H3K4ac.AK51.sga H1|H3K4ac|rep 2 H3K4ac GSM667624
61 GSM409307_UCSD.H1.H3K4me1.LL228.sga H1|H3K4me1|rep 1 H3K4me1 GSM409307
62 GSM433177_BI.H1.H3K4me1.Solexa-10529.sga H1|H3K4me1|rep 2 H3K4me1 GSM433177
63 GSM434762_UCSF-UBC.H1.H3K4me1.H1EScd1-me1K4-D.sga H1|H3K4me1|rep 3 H3K4me1 GSM434762
64 GSM466739_UCSD.H1.H3K4me1.LL311.sga H1|H3K4me1|rep 4 H3K4me1 GSM466739
65 GSM537679_BI.H1.H3K4me1.Solexa-13061.sga H1|H3K4me1|rep 5 H3K4me1 GSM537679
66 GSM605312_UCSD.H1.H3K4me1.YL131.sga H1|H3K4me1|rep 6 H3K4me1 GSM605312
67 GSM602260_UCSD.H1.H3K4me2.LL322.sga H1|H3K4me2|rep 1 H3K4me2 GSM602260
68 GSM602261_UCSD.H1.H3K4me2.YL96.sga H1|H3K4me2|rep 2 H3K4me2 GSM602261
69 GSM409308_UCSD.H1.H3K4me3.LL227.sga H1|H3K4me3|rep 1 H3K4me3 GSM409308
70 GSM410808_UCSF-UBC.H1.H3K4me3.H1EScd1-me3K4-A.sga H1|H3K4me3|rep 2 H3K4me3 GSM410808
71 GSM432392_UCSF-UBC.H1.H3K4me3.H1EScd2-me3K4-C.sga H1|H3K4me3|rep 3 H3K4me3 GSM432392
72 GSM433170_BI.H1.H3K4me3.Solexa-8038.sga H1|H3K4me3|rep 4 H3K4me3 GSM433170
73 GSM469971_UCSD.H1.H3K4me3.LL312.sga H1|H3K4me3|rep 5 H3K4me3 GSM469971
74 GSM537680_BI.H1.H3K4me3.Solexa-10398.sga H1|H3K4me3|rep 6 H3K4me3 GSM537680
75 GSM537681_BI.H1.H3K4me3.Solexa-12522.sga H1|H3K4me3|rep 7 H3K4me3 GSM537681
76 GSM605315_UCSD.H1.H3K4me3.SAK67.sga H1|H3K4me3|rep 8 H3K4me3 GSM605315
77 GSM605317_UCSD.H1.H3K56ac.SAK211.sga H1|H3K56ac|rep 1 H3K56ac GSM605317
78 GSM667627_UCSD.H1.H3K56ac.SK300.sga H1|H3K56ac|rep 2 H3K56ac GSM667627
79 GSM605318_UCSD.H1.H3K79me1.YL82.sga H1|H3K79me1|rep 1 H3K79me1 GSM605318
80 GSM605319_UCSD.H1.H3K79me1.SAK73.sga H1|H3K79me1|rep 2 H3K79me1 GSM605319
81 GSM605320_UCSD.H1.H3K79me1.YL192.sga H1|H3K79me1|rep 3 H3K79me1 GSM605320
82 GSM605321_UCSD.H1.H3K79me2.SAK80.sga H1|H3K79me2|rep 1 H3K79me2 GSM605321
83 GSM605322_UCSD.H1.H3K79me2.YL204.sga H1|H3K79me2|rep 2 H3K79me2 GSM605322
84 GSM410807_UCSF-UBC.H1.H3K9ac.H1EScd1-acK9-A.sga H1|H3K9ac|rep 1 H3K9ac GSM410807
85 GSM433171_BI.H1.H3K9ac.Solexa-12526.sga H1|H3K9ac|rep 2 H3K9ac GSM433171
86 GSM434785_UCSD.H1.H3K9ac.LL240.sga H1|H3K9ac|rep 3 H3K9ac GSM434785
87 GSM537685_BI.H1.H3K9ac.Solexa-14962.sga H1|H3K9ac|rep 4 H3K9ac GSM537685
88 GSM605323_UCSD.H1.H3K9ac.SAK68.sga H1|H3K9ac|rep 5 H3K9ac GSM605323
89 GSM428291_UCSF-UBC.H1.H3K9me3.H1EScd1-me3K9-A.sga H1|H3K9me3|rep 1 H3K9me3 GSM428291
90 GSM433174_BI.H1.H3K9me3.Solexa-12525.sga H1|H3K9me3|rep 2 H3K9me3 GSM433174
91 GSM450266_UCSF-UBC.H1.H3K9me3.H1EScd2-me3K9-B.sga H1|H3K9me3|rep 3 H3K9me3 GSM450266
92 GSM605325_UCSD.H1.H3K9me3.LL218.sga H1|H3K9me3|rep 4 H3K9me3 GSM605325
93 GSM605327_UCSD.H1.H3K9me3.YL75.sga H1|H3K9me3|rep 5 H3K9me3 GSM605327
94 GSM605328_UCSD.H1.H3K9me3.YL77.sga H1|H3K9me3|rep 6 H3K9me3 GSM605328
95 GSM818057_UCSD.H1.H3K9me3.AK54.sga H1|H3K9me3|rep 7 H3K9me3 GSM818057
96 GSM605329_UCSD.H1.H4K20me1.YL253.sga H1|H4K20me1|rep 1 H4K20me1 GSM605329
97 GSM789284_UCSD.H1.H4K20me1.SK529.sga H1|H4K20me1|rep 2 H4K20me1 GSM789284
98 GSM605330_UCSD.H1.H4K5ac.LL323.sga H1|H4K5ac|rep 1 H4K5ac GSM605330
99 GSM752990_UCSD.H1.H4K5ac.SK302.sga H1|H4K5ac|rep 2 H4K5ac GSM752990
100 GSM896166_UCSD.H1.H4K8ac.AY17.sga H1|H4K8ac|rep 1 H4K8ac GSM896166
101 GSM908966_UCSD.H1.H4K8ac.AY18.sga H1|H4K8ac|rep 2 H4K8ac GSM908966
102 GSM605332_UCSD.H1.H4K91ac.YL254.sga H1|H4K91ac|rep 1 H4K91ac GSM605332
103 GSM752991_UCSD.H1.H4K91ac.SK303.sga H1|H4K91ac|rep 2 H4K91ac GSM752991
104 GSM428289_UCSF-UBC.H1.Input.TOTAL-H1EScd1.sga H1|Input|rep 1 Input GSM428289
105 GSM667641_UCSD.H1.Input.YL328.sga H1|Input|rep 10 Input GSM667641
106 GSM667642_UCSD.H1.Input.AK57.sga H1|Input|rep 11 Input GSM667642
107 GSM433179_BI.H1.Input.Solexa-10531.sga H1|Input|rep 12 WCE GSM433179
108 GSM537682_BI.H1.Input.Solexa-12532.sga H1|Input|rep 13 WCE GSM537682
109 GSM450270_UCSF-UBC.H1.Input.TOTAL-hEScd2-2.sga H1|Input|rep 2 Input GSM450270
110 GSM605333_UCSD.H1.Input.LL-H1-I1.sga H1|Input|rep 3 Input GSM605333
111 GSM605334_UCSD.H1.Input.LL-H1-I2.sga H1|Input|rep 4 Input GSM605334
112 GSM605335_UCSD.H1.Input.YL208.sga H1|Input|rep 5 Input GSM605335
113 GSM605336_UCSD.H1.Input.YL262.sga H1|Input|rep 6 Input GSM605336
114 GSM605337_UCSD.H1.Input.YL154.sga H1|Input|rep 7 Input GSM605337
115 GSM605338_UCSD.H1.Input.DM219.sga H1|Input|rep 8 Input GSM605338
116 GSM605339_UCSD.H1.Input.LLH1U.sga H1|Input|rep 9 Input GSM605339
117 GSM807391_UCSD.H9.H2A.Z.SK532.sga H9|H2A H2A.Z GSM807391
118 GSM667608_UCSD.H9.H2AK5ac.SK193.sga H9|H2AK5ac|rep 1 H2AK5ac GSM667608
119 GSM667609_UCSD.H9.H2AK5ac.AK28.sga H9|H2AK5ac|rep 2 H2AK5ac GSM667609
120 GSM752962_UCSD.H9.H2BK120ac.SK378.sga H9|H2BK120ac H2BK120ac GSM752962
121 GSM667610_UCSD.H9.H2BK12ac.AK30.sga H9|H2BK12ac|rep 1 H2BK12ac GSM667610
122 GSM667611_UCSD.H9.H2BK12ac.AK112.sga H9|H2BK12ac|rep 2 H2BK12ac GSM667611
123 GSM706062_UCSD.H9.H2BK15ac.AK113.sga H9|H2BK15ac|rep 1 H2BK15ac GSM706062
124 GSM706063_UCSD.H9.H2BK15ac.SK376.sga H9|H2BK15ac|rep 2 H2BK15ac GSM706063
125 GSM864034_UCSD.H9.H2BK15ac.AY28.sga H9|H2BK15ac|rep 3 H2BK15ac GSM864034
126 GSM752963_UCSD.H9.H2BK20ac.SK377.sga H9|H2BK20ac H2BK20ac GSM752963
127 GSM667612_UCSD.H9.H2BK5ac.YL244.sga H9|H2BK5ac|rep 1 H2BK5ac GSM667612
128 GSM667613_UCSD.H9.H2BK5ac.AK29.sga H9|H2BK5ac|rep 2 H2BK5ac GSM667613
129 GSM752964_UCSD.H9.H3K14ac.SK380.sga H9|H3K14ac|rep 1 H3K14ac GSM752964
130 GSM896161_UCSD.H9.H3K14ac.AY15.sga H9|H3K14ac|rep 2 H3K14ac GSM896161
131 GSM667616_UCSD.H9.H3K18ac.SK276.sga H9|H3K18ac|rep 1 H3K18ac GSM667616
132 GSM706064_UCSD.H9.H3K18ac.SK375.sga H9|H3K18ac|rep 2 H3K18ac GSM706064
133 GSM667619_UCSD.H9.H3K23ac.YL236.sga H9|H3K23ac|rep 1 H3K23ac GSM667619
134 GSM667620_UCSD.H9.H3K23ac.SK289.sga H9|H3K23ac|rep 2 H3K23ac GSM667620
135 GSM667621_UCSD.H9.H3K23me2.SK277.sga H9|H3K23me2|rep 1 H3K23me2 GSM667621
136 GSM807396_UCSD.H9.H3K23me2.SK527.sga H9|H3K23me2|rep 2 H3K23me2 GSM807396
137 GSM605307_UCSD.H9.H3K27ac.YL237.sga H9|H3K27ac|rep 1 H3K27ac GSM605307
138 GSM665037_UCSD.H9.H3K27ac.SK265.sga H9|H3K27ac|rep 2 H3K27ac GSM665037
139 GSM667622_UCSD.H9.H3K27me3.SK99.sga H9|H3K27me3|rep 1 H3K27me3 GSM667622
140 GSM706066_UCSD.H9.H3K27me3.AK142.sga H9|H3K27me3|rep 2 H3K27me3 GSM706066
141 GSM605310_UCSD.H9.H3K36me3.SK102.sga H9|H3K36me3|rep 1 H3K36me3 GSM605310
142 GSM667623_UCSD.H9.H3K36me3.SK278.sga H9|H3K36me3|rep 2 H3K36me3 GSM667623
143 GSM667625_UCSD.H9.H3K4ac.SK328.sga H9|H3K4ac|rep 1 H3K4ac GSM667625
144 GSM752976_UCSD.H9.H3K4ac.SK379.sga H9|H3K4ac|rep 2 H3K4ac GSM752976
145 GSM667626_UCSD.H9.H3K4me1.YL123.sga H9|H3K4me1|rep 1 H3K4me1 GSM667626
146 GSM706071_UCSD.H9.H3K4me1.AK141.sga H9|H3K4me1|rep 2 H3K4me1 GSM706071
147 GSM605314_UCSD.H9.H3K4me2.SK198.sga H9|H3K4me2|rep 1 H3K4me2 GSM605314
148 GSM616127_UCSD.H9.H3K4me2.AK38.sga H9|H3K4me2|rep 2 H3K4me2 GSM616127
149 GSM605316_UCSD.H9.H3K4me3.SK101.sga H9|H3K4me3|rep 1 H3K4me3 GSM605316
150 GSM616128_UCSD.H9.H3K4me3.AK39.sga H9|H3K4me3|rep 2 H3K4me3 GSM616128
151 GSM667628_UCSD.H9.H3K56ac.YL238.sga H9|H3K56ac|rep 1 H3K56ac GSM667628
152 GSM706076_UCSD.H9.H3K56ac.SK279.sga H9|H3K56ac|rep 2 H3K56ac GSM706076
153 GSM667629_UCSD.H9.H3K79me1.SK329.sga H9|H3K79me1|rep 1 H3K79me1 GSM667629
154 GSM706077_UCSD.H9.H3K79me1.SK374.sga H9|H3K79me1|rep 2 H3K79me1 GSM706077
155 GSM667630_UCSD.H9.H3K79me2.SK190.sga H9|H3K79me2|rep 1 H3K79me2 GSM667630
156 GSM706078_UCSD.H9.H3K79me2.AK143.sga H9|H3K79me2|rep 2 H3K79me2 GSM706078
157 GSM605324_UCSD.H9.H3K9ac.SK199.sga H9|H3K9ac|rep 1 H3K9ac GSM605324
158 GSM616129_UCSD.H9.H3K9ac.AK35.sga H9|H3K9ac|rep 2 H3K9ac GSM616129
159 GSM667631_UCSD.H9.H3K9me3.SK100.sga H9|H3K9me3|rep 1 H3K9me3 GSM667631
160 GSM667632_UCSD.H9.H3K9me3.SK200.sga H9|H3K9me3|rep 2 H3K9me3 GSM667632
161 GSM667633_UCSD.H9.H3K9me3.AK40.sga H9|H3K9me3|rep 3 H3K9me3 GSM667633
162 GSM807403_UCSD.H9.H3T11ph.SK509.sga H9|H3T11ph H3T11ph GSM807403
163 GSM667634_UCSD.H9.H4K20me1.SK286.sga H9|H4K20me1 H4K20me1 GSM667634
164 GSM667635_UCSD.H9.H4K5ac.YL240.sga H9|H4K5ac|rep 1 H4K5ac GSM667635
165 GSM667636_UCSD.H9.H4K5ac.SK282.sga H9|H4K5ac|rep 2 H4K5ac GSM667636
166 GSM667637_UCSD.H9.H4K8ac.YL241.sga H9|H4K8ac|rep 1 H4K8ac GSM667637
167 GSM667638_UCSD.H9.H4K8ac.SK283.sga H9|H4K8ac|rep 2 H4K8ac GSM667638
168 GSM667639_UCSD.H9.H4K91ac.SK287.sga H9|H4K91ac|rep 1 H4K91ac GSM667639
169 GSM667640_UCSD.H9.H4K91ac.SK332.sga H9|H4K91ac|rep 2 H4K91ac GSM667640
170 GSM667643_UCSD.H9.Input.SKH9-4.sga H9|Input|rep 1 Input GSM667643
171 GSM706081_UCSD.H9.Input.AK144.sga H9|Input|rep 2 Input GSM706081
172 GSM832839_UCSD.H9.Input.SK338.sga H9|Input|rep 3 Input GSM832839
173 GSM997250_BI.HUES48.H3K27ac.DNA_Lib_2068.sga HUES48|H3K27ac H3K27ac GSM997250
174 GSM669942_BI.HUES48.H3K27me3.Lib_MC_20101025_10--ChIP_MC_20101020_10_ES_cell_HUES_48_H3K27Me3.sga HUES48|H3K27me3|rep 1 H3K27me3 GSM669942
175 GSM772766_BI.HUES48.H3K27me3.Lib_EpiLabSPL_Row_1716.sga HUES48|H3K27me3|rep 2 H3K27me3 GSM772766
176 GSM670039_BI.HUES48.H3K36me3.Lib_MC_20101025_09--ChIP_MC_20101020_09_ES_cell_HUES_48_H3K36Me3.sga HUES48|H3K36me3|rep 1 H3K36me3 GSM670039
177 GSM772798_BI.HUES48.H3K36me3.Lib_EpiLabSPL_Row_1715.sga HUES48|H3K36me3|rep 2 H3K36me3 GSM772798
178 GSM669954_BI.HUES48.H3K4me1.Lib_MC_20101025_07--ChIP_MC_20101020_07_ES_cell_HUES_48_H3K4Me1.sga HUES48|H3K4me1|rep 1 H3K4me1 GSM669954
179 GSM772793_BI.HUES48.H3K4me1.Lib_EpiLabSPL_Row_1713.sga HUES48|H3K4me1|rep 2 H3K4me1 GSM772793
180 GSM669936_BI.HUES48.H3K4me3.Lib_MC_20101025_08--ChIP_MC_20101020_08_ES_cell_HUES_48_H3K4Me3.sga HUES48|H3K4me3|rep 1 H3K4me3 GSM669936
181 GSM772797_BI.HUES48.H3K4me3.Lib_EpiLabSPL_Row_1714.sga HUES48|H3K4me3|rep 2 H3K4me3 GSM772797
182 GSM670013_BI.HUES48.H3K9ac.Lib_MC_20101025_11--ChIP_MC_20101020_11_ES_cell_HUES_48_H3K9Ac.sga HUES48|H3K9ac|rep 1 H3K9ac GSM670013
183 GSM772796_BI.HUES48.H3K9ac.Lib_EpiLabSPL_Row_1717.sga HUES48|H3K9ac|rep 2 H3K9ac GSM772796
184 GSM772780_BI.HUES48.H3K9me3.Lib_EpiLabSPL_Row_1707.sga HUES48|H3K9me3|rep 1 H3K9me3 GSM772780
185 GSM772799_BI.HUES48.H3K9me3.Lib_EpiLabSPL_Row_1718.sga HUES48|H3K9me3|rep 2 H3K9me3 GSM772799
186 GSM772755_BI.HUES48.Input.Lib_EpiLabSPL_Row_1725.sga HUES48|Input|rep 1 WCE GSM772755
187 GSM772794_BI.HUES48.Input.Lib_EpiLabSPL_Row_1710.sga HUES48|Input|rep 2 WCE GSM772794
188 GSM1112775_BI.HUES64.H3K27ac.DNA_Lib_834.sga HUES64|H3K27ac|rep 1 H3K27ac GSM1112775
189 GSM997249_BI.HUES64.H3K27ac.DNA_Lib_2069.sga HUES64|H3K27ac|rep 2 H3K27ac GSM997249
190 GSM669974_BI.HUES64.H3K27me3.Lib_MC_20101025_04--ChIP_MC_20101020_04_ES_cell_HUES_64_H3K27Me3.sga HUES64|H3K27me3|rep 1 H3K27me3 GSM669974
191 GSM772750_BI.HUES64.H3K27me3.Lib_EpiLabSPL_Row_1722.sga HUES64|H3K27me3|rep 2 H3K27me3 GSM772750
192 GSM669932_BI.HUES64.H3K36me3.Lib_MC_20101025_03--ChIP_MC_20101020_03_ES_cell_HUES_64_H3K36Me3.sga HUES64|H3K36me3|rep 1 H3K36me3 GSM669932
193 GSM772751_BI.HUES64.H3K36me3.Lib_EpiLabSPL_Row_1721.sga HUES64|H3K36me3|rep 2 H3K36me3 GSM772751
194 GSM669966_BI.HUES64.H3K4me1.Lib_MC_20101025_01--ChIP_MC_20101020_01_ES_cell_HUES_64_H3K4Me1.sga HUES64|H3K4me1|rep 1 H3K4me1 GSM669966
195 GSM772800_BI.HUES64.H3K4me1.Lib_EpiLabSPL_Row_1719.sga HUES64|H3K4me1|rep 2 H3K4me1 GSM772800
196 GSM669967_BI.HUES64.H3K4me3.Lib_MC_20101025_02--ChIP_MC_20101020_02_ES_cell_HUES_64_H3K4Me3.sga HUES64|H3K4me3|rep 1 H3K4me3 GSM669967
197 GSM772752_BI.HUES64.H3K4me3.Lib_EpiLabSPL_Row_1720.sga HUES64|H3K4me3|rep 2 H3K4me3 GSM772752
198 GSM669963_BI.HUES64.H3K9ac.Lib_MC_20101025_05--ChIP_MC_20101020_05_ES_cell_HUES_64_H3K9Ac.sga HUES64|H3K9ac|rep 1 H3K9ac GSM669963
199 GSM772749_BI.HUES64.H3K9ac.Lib_EpiLabSPL_Row_1723.sga HUES64|H3K9ac|rep 2 H3K9ac GSM772749
200 GSM669928_BI.HUES64.H3K9me3.Lib_MC_20101025_06--ChIP_MC_20101020_06_ES_cell_HUES_64_H3K9Me3.sga HUES64|H3K9me3|rep 1 H3K9me3 GSM669928
201 GSM772756_BI.HUES64.H3K9me3.Lib_EpiLabSPL_Row_1724.sga HUES64|H3K9me3|rep 2 H3K9me3 GSM772756
202 GSM772754_BI.HUES64.Input.Lib_EpiLabSPL_Row_1726.sga HUES64|Input|rep 1 WCE GSM772754
203 GSM772807_BI.HUES64.Input.Lib_EpiLabSPL_Row_1709.sga HUES64|Input|rep 2 WCE GSM772807
204 GSM1112774_BI.HUES6.H3K27ac.DNA_Lib_835.sga HUES6|H3K27ac|rep 1 H3K27ac GSM1112774
205 GSM1112776_BI.HUES6.H3K27ac.DNA_Lib_837.sga HUES6|H3K27ac|rep 2 H3K27ac GSM1112776
206 GSM669887_BI.HUES6.H3K27me3.Lib_XZ_20101004_04--ChIP_XZ_20100930_04_ES_cell_HUES_6_H3K27Me3.sga HUES6|H3K27me3|rep 1 H3K27me3 GSM669887
207 GSM669897_BI.HUES6.H3K27me3.Lib_XZ_20101004_11--ChIP_XZ_20100930_11_ES_cell_HUES_6_H3K27Me3.sga HUES6|H3K27me3|rep 2 H3K27me3 GSM669897
208 GSM669892_BI.HUES6.H3K36me3.Lib_XZ_20101004_10--ChIP_XZ_20100930_10_ES_cell_HUES_6_H3K36Me3.sga HUES6|H3K36me3|rep 1 H3K36me3 GSM669892
209 GSM669898_BI.HUES6.H3K36me3.Lib_XZ_20101004_03--ChIP_XZ_20100930_03_ES_cell_HUES_6_H3K36Me3.sga HUES6|H3K36me3|rep 2 H3K36me3 GSM669898
210 GSM669885_BI.HUES6.H3K4me1.Lib_XZ_20101004_01--ChIP_XZ_20100930_01_ES_cell_HUES_6_H3K4Me1.sga HUES6|H3K4me1|rep 1 H3K4me1 GSM669885
211 GSM669891_BI.HUES6.H3K4me1.Lib_XZ_20101004_08--ChIP_XZ_20100930_08_ES_cell_HUES_6_H3K4Me1.sga HUES6|H3K4me1|rep 2 H3K4me1 GSM669891
212 GSM669889_BI.HUES6.H3K4me3.Lib_XZ_20101004_02--ChIP_XZ_20100930_02_ES_cell_HUES_6_H3K4Me3.sga HUES6|H3K4me3|rep 1 H3K4me3 GSM669889
213 GSM669893_BI.HUES6.H3K4me3.Lib_XZ_20101004_09--ChIP_XZ_20100930_09_ES_cell_HUES_6_H3K4Me3.sga HUES6|H3K4me3|rep 2 H3K4me3 GSM669893
214 GSM669890_BI.HUES6.H3K9ac.Lib_XZ_20101004_12--ChIP_XZ_20100930_12_ES_cell_HUES_6_H3K9Ac.sga HUES6|H3K9ac H3K9ac GSM669890
215 GSM669886_BI.HUES6.H3K9me3.Lib_XZ_20101004_06--ChIP_XZ_20100930_06_ES_cell_HUES_6_H3K9Me3.sga HUES6|H3K9me3|rep 1 H3K9me3 GSM669886
216 GSM669894_BI.HUES6.H3K9me3.Lib_XZ_20101004_13--ChIP_XZ_20100930_13_ES_cell_HUES_6_H3K9Me3.sga HUES6|H3K9me3|rep 2 H3K9me3 GSM669894
217 GSM669888_BI.HUES6.Input.Lib_XZ_20101004_07--ChIP_XZ_20100930_07_ES_cell_HUES_6_WCE.sga HUES6|Input|rep 1 WCE GSM669888
218 GSM669895_BI.HUES6.Input.Lib_XZ_20101004_14--ChIP_XZ_20100930_14_ES_cell_HUES_6_WCE.sga HUES6|Input|rep 2 WCE GSM669895
219 GSM1127084_UCSF-UBC.UCSF-4Star.H3K27me3.A19299.sga UCSF-4Star|H3K27me3 H3K27me3 GSM1127084
220 GSM1127070_UCSF-UBC.UCSF-4Star.H3K36me3.A19300.sga UCSF-4Star|H3K36me3 H3K36me3 GSM1127070
221 GSM1127080_UCSF-UBC.UCSF-4Star.H3K4me1.A19296.sga UCSF-4Star|H3K4me1 H3K4me1 GSM1127080
222 GSM1127063_UCSF-UBC.UCSF-4Star.H3K4me3.A19297.sga UCSF-4Star|H3K4me3 H3K4me3 GSM1127063
223 GSM1127081_UCSF-UBC.UCSF-4Star.H3K9me3.A19298.sga UCSF-4Star|H3K9me3 H3K9me3 GSM1127081
224 GSM1127090_UCSF-UBC.UCSF-4Star.Input.A19302.sga UCSF-4Star|Input Input GSM1127090
225 GSM941751_UCSF-UBC.UCSF-4star.H3K27me3.A14672.sga UCSF-4star|H3K27me3 H3K27me3 GSM941751
226 GSM941752_UCSF-UBC.UCSF-4star.H3K36me3.A14673.sga UCSF-4star|H3K36me3 H3K36me3 GSM941752
227 GSM941748_UCSF-UBC.UCSF-4star.H3K4me1.A14669.sga UCSF-4star|H3K4me1 H3K4me1 GSM941748
228 GSM941749_UCSF-UBC.UCSF-4star.H3K4me3.A14670.sga UCSF-4star|H3K4me3 H3K4me3 GSM941749
229 GSM941750_UCSF-UBC.UCSF-4star.H3K9me3.A14671.sga UCSF-4star|H3K9me3 H3K9me3 GSM941750
230 GSM941753_UCSF-UBC.UCSF-4star.Input.A14674.sga UCSF-4star|Input Input GSM941753

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM878616_UW.H1.ChromatinAccessibility.DS18873.sga H1|DNase-seq|rep 1 DNase-seq GSM878616
2 GSM878621_UW.H1.ChromatinAccessibility.DS19100.sga H1|DNase-seq|rep 2 DNase-seq GSM878621
3 GSM878612_UW.H9.ChromatinAccessibility.DS18517.sga H9|DNase-seq|rep 1 DNase-seq GSM878612
4 GSM878613_UW.H9.ChromatinAccessibility.DS18522.sga H9|DNase-seq|rep 2 DNase-seq GSM878613

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

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