Adult exocrine and endocrine glands.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1013126_UCSD.Adrenal_Gland.H3K27ac.STL002.sga Adrenal Gland|H3K27ac|rep 1 H3K27ac GSM1013126
2 GSM896163_UCSD.Adrenal_Gland.H3K27ac.STL003.sga Adrenal Gland|H3K27ac|rep 2 H3K27ac GSM896163
3 GSM1059439_UCSD.Adrenal_Gland.H3K36me3.STL002.sga Adrenal Gland|H3K36me3|rep 1 H3K36me3 GSM1059439
4 GSM956015_UCSD.Adrenal_Gland.H3K36me3.STL003.sga Adrenal Gland|H3K36me3|rep 2 H3K36me3 GSM956015
5 GSM1059447_UCSD.Adrenal_Gland.H3K4me1.STL002.sga Adrenal Gland|H3K4me1|rep 1 H3K4me1 GSM1059447
6 GSM1059449_UCSD.Adrenal_Gland.H3K4me1.STL003.sga Adrenal Gland|H3K4me1|rep 2 H3K4me1 GSM1059449
7 GSM910583_UCSD.Adrenal_Gland.H3K9me3.STL003.sga Adrenal Gland|H3K9me3 H3K9me3 GSM910583
8 GSM1013168_UCSD.Adrenal_Gland.Input.STL002.sga Adrenal Gland|Input|rep 1 Input GSM1013168
9 GSM896167_UCSD.Adrenal_Gland.Input.STL003.sga Adrenal Gland|Input|rep 2 Input GSM896167
10 GSM1013129_UCSD.Pancreas.H3K27ac.STL002.sga Pancreas|H3K27ac|rep 1 H3K27ac GSM1013129
11 GSM906397_UCSD.Pancreas.H3K27ac.STL003.sga Pancreas|H3K27ac|rep 2 H3K27ac GSM906397
12 GSM910563_UCSD.Pancreas.H3K27me3.STL003.sga Pancreas|H3K27me3 H3K27me3 GSM910563
13 GSM1127182_UCSD.Pancreas.H3K36me3.STL002.sga Pancreas|H3K36me3|rep 1 H3K36me3 GSM1127182
14 GSM910570_UCSD.Pancreas.H3K36me3.STL003.sga Pancreas|H3K36me3|rep 2 H3K36me3 GSM910570
15 GSM1013149_UCSD.Pancreas.H3K4me1.STL002.sga Pancreas|H3K4me1|rep 1 H3K4me1 GSM1013149
16 GSM910576_UCSD.Pancreas.H3K4me1.STL003.sga Pancreas|H3K4me1|rep 2 H3K4me1 GSM910576
17 GSM910581_UCSD.Pancreas.H3K4me3.STL003.sga Pancreas|H3K4me3 H3K4me3 GSM910581
18 GSM1013163_UCSD.Pancreas.H3K9me3.STL002.sga Pancreas|H3K9me3|rep 1 H3K9me3 GSM1013163
19 GSM910586_UCSD.Pancreas.H3K9me3.STL003.sga Pancreas|H3K9me3|rep 2 H3K9me3 GSM910586
20 GSM1013172_UCSD.Pancreas.Input.STL002.sga Pancreas|Input|rep 1 Input GSM1013172
21 GSM906419_UCSD.Pancreas.Input.STL003.sga Pancreas|Input|rep 2 Input GSM906419
22 GSM1013132_UCSD.Spleen.H3K27ac.STL002.sga Spleen|H3K27ac|rep 1 H3K27ac GSM1013132
23 GSM1120338_UCSD.Spleen.H3K27ac.STL001.sga Spleen|H3K27ac|rep 2 H3K27ac GSM1120338
24 GSM906398_UCSD.Spleen.H3K27ac.STL003.sga Spleen|H3K27ac|rep 3 H3K27ac GSM906398
25 GSM906400_UCSD.Spleen.H3K27me3.STL003.sga Spleen|H3K27me3 H3K27me3 GSM906400
26 GSM1120348_UCSD.Spleen.H3K36me3.STL002.sga Spleen|H3K36me3|rep 1 H3K36me3 GSM1120348
27 GSM910571_UCSD.Spleen.H3K36me3.STL003.sga Spleen|H3K36me3|rep 2 H3K36me3 GSM910571
28 GSM1120351_UCSD.Spleen.H3K4me1.STL002.sga Spleen|H3K4me1|rep 1 H3K4me1 GSM1120351
29 GSM910577_UCSD.Spleen.H3K4me1.STL003.sga Spleen|H3K4me1|rep 2 H3K4me1 GSM910577
30 GSM910582_UCSD.Spleen.H3K4me3.STL003.sga Spleen|H3K4me3 H3K4me3 GSM910582
31 GSM910588_UCSD.Spleen.H3K9me3.STL003.sga Spleen|H3K9me3 H3K9me3 GSM910588
32 GSM1013174_UCSD.Spleen.Input.STL002.sga Spleen|Input|rep 1 Input GSM1013174
33 GSM1127188_UCSD.Spleen.Input.STL001.sga Spleen|Input|rep 2 Input GSM1127188
34 GSM906423_UCSD.Spleen.Input.STL003.sga Spleen|Input|rep 3 Input GSM906423
35 GSM1013125_UCSD.Thymus.H3K27ac.STL001.sga Thymus|H3K27ac H3K27ac GSM1013125
36 GSM1013142_UCSD.Thymus.H3K36me3.STL001.sga Thymus|H3K36me3 H3K36me3 GSM1013142
37 GSM1059446_UCSD.Thymus.H3K4me1.STL001.sga Thymus|H3K4me1 H3K4me1 GSM1059446
38 GSM1013161_UCSD.Thymus.H3K9me3.STL001.sga Thymus|H3K9me3 H3K9me3 GSM1013161
39 GSM956030_UCSD.Thymus.Input.STL001.sga Thymus|Input Input GSM956030

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027326_UW.Pancreas.ChromatinAccessibility.STL003.DNase.DS20753.sga Pancreas|DNase-seq|rep 1 DNase-seq GSM1027326
2 GSM1027335_UW.Pancreas.ChromatinAccessibility.STL002.DNase.DS20842.sga Pancreas|DNase-seq|rep 2 DNase-seq GSM1027335

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files