Adult fat tissue.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM621420_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K27me3|rep 1 H3K27me3 GSM621420
2 GSM772821_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K27me3.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K27me3|rep 2 H3K27me3 GSM772821
3 GSM621446_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K36me3|rep 1 H3K36me3 GSM621446
4 GSM772763_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.93.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K36me3|rep 2 H3K36me3 GSM772763
5 GSM772820_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K36me3.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K36me3|rep 3 H3K36me3 GSM772820
6 GSM621418_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K4me1|rep 1 H3K4me1 GSM621418
7 GSM772748_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K4me1|rep 2 H3K4me1 GSM772748
8 GSM772762_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me1.93.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K4me1|rep 3 H3K4me1 GSM772762
9 GSM621458_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K4me3|rep 1 H3K4me3 GSM621458
10 GSM772747_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K4me3|rep 2 H3K4me3 GSM772747
11 GSM772761_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K4me3.93.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K4me3|rep 3 H3K4me3 GSM772761
12 GSM670020_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K9ac|rep 1 H3K9ac GSM670020
13 GSM772760_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.93.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K9ac|rep 2 H3K9ac GSM772760
14 GSM772822_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K9ac|rep 3 H3K9ac GSM772822
15 GSM621398_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K9me3|rep 1 H3K9me3 GSM621398
16 GSM772759_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.93.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K9me3|rep 2 H3K9me3 GSM772759
17 GSM772823_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9me3.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|H3K9me3|rep 3 H3K9me3 GSM772823
18 GSM621443_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.1.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|Input|rep 1 WCE GSM621443
19 GSM772739_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.93.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|Input|rep 2 WCE GSM772739
20 GSM772765_BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.92.sga Adipose Derived Mesenchymal Stem Cell Cultured Cells|Input|rep 3 WCE GSM772765
21 GSM916066_BI.Adipose_Nuclei.H3K27ac.7.sga Adipose Nuclei|H3K27ac H3K27ac GSM916066
22 GSM669930_BI.Adipose_Nuclei.H3K27me3.92.sga Adipose Nuclei|H3K27me3|rep 1 H3K27me3 GSM669930
23 GSM670017_BI.Adipose_Nuclei.H3K27me3.95.sga Adipose Nuclei|H3K27me3|rep 2 H3K27me3 GSM670017
24 GSM670035_BI.Adipose_Nuclei.H3K27me3.94.sga Adipose Nuclei|H3K27me3|rep 3 H3K27me3 GSM670035
25 GSM772771_BI.Adipose_Nuclei.H3K27me3.93.sga Adipose Nuclei|H3K27me3|rep 4 H3K27me3 GSM772771
26 GSM916055_BI.Adipose_Nuclei.H3K27me3.7.sga Adipose Nuclei|H3K27me3|rep 5 H3K27me3 GSM916055
27 GSM621461_BI.Adipose_Nuclei.H3K36me3.7.sga Adipose Nuclei|H3K36me3|rep 1 H3K36me3 GSM621461
28 GSM669952_BI.Adipose_Nuclei.H3K36me3.92.sga Adipose Nuclei|H3K36me3|rep 2 H3K36me3 GSM669952
29 GSM669979_BI.Adipose_Nuclei.H3K36me3.94.sga Adipose Nuclei|H3K36me3|rep 3 H3K36me3 GSM669979
30 GSM669997_BI.Adipose_Nuclei.H3K36me3.95.sga Adipose Nuclei|H3K36me3|rep 4 H3K36me3 GSM669997
31 GSM670014_BI.Adipose_Nuclei.H3K36me3.93.sga Adipose Nuclei|H3K36me3|rep 5 H3K36me3 GSM670014
32 GSM621425_BI.Adipose_Nuclei.H3K4me1.7.sga Adipose Nuclei|H3K4me1|rep 1 H3K4me1 GSM621425
33 GSM669908_BI.Adipose_Nuclei.H3K4me1.92.sga Adipose Nuclei|H3K4me1|rep 2 H3K4me1 GSM669908
34 GSM669975_BI.Adipose_Nuclei.H3K4me1.94.sga Adipose Nuclei|H3K4me1|rep 3 H3K4me1 GSM669975
35 GSM670045_BI.Adipose_Nuclei.H3K4me1.93.sga Adipose Nuclei|H3K4me1|rep 4 H3K4me1 GSM670045
36 GSM772757_BI.Adipose_Nuclei.H3K4me1.95.sga Adipose Nuclei|H3K4me1|rep 5 H3K4me1 GSM772757
37 GSM621435_BI.Adipose_Nuclei.H3K4me3.7.sga Adipose Nuclei|H3K4me3|rep 1 H3K4me3 GSM621435
38 GSM669925_BI.Adipose_Nuclei.H3K4me3.92.sga Adipose Nuclei|H3K4me3|rep 2 H3K4me3 GSM669925
39 GSM669988_BI.Adipose_Nuclei.H3K4me3.95.sga Adipose Nuclei|H3K4me3|rep 3 H3K4me3 GSM669988
40 GSM669998_BI.Adipose_Nuclei.H3K4me3.93.sga Adipose Nuclei|H3K4me3|rep 4 H3K4me3 GSM669998
41 GSM670041_BI.Adipose_Nuclei.H3K4me3.94.sga Adipose Nuclei|H3K4me3|rep 5 H3K4me3 GSM670041
42 GSM669904_BI.Adipose_Nuclei.H3K9ac.92.sga Adipose Nuclei|H3K9ac|rep 1 H3K9ac GSM669904
43 GSM669922_BI.Adipose_Nuclei.H3K9ac.93.sga Adipose Nuclei|H3K9ac|rep 2 H3K9ac GSM669922
44 GSM669938_BI.Adipose_Nuclei.H3K9ac.94.sga Adipose Nuclei|H3K9ac|rep 3 H3K9ac GSM669938
45 GSM670027_BI.Adipose_Nuclei.H3K9ac.95.sga Adipose Nuclei|H3K9ac|rep 4 H3K9ac GSM670027
46 GSM772802_BI.Adipose_Nuclei.H3K9ac.7.sga Adipose Nuclei|H3K9ac|rep 5 H3K9ac GSM772802
47 GSM621391_BI.Adipose_Nuclei.H3K9me3.7.sga Adipose Nuclei|H3K9me3|rep 1 H3K9me3 GSM621391
48 GSM669933_BI.Adipose_Nuclei.H3K9me3.95.sga Adipose Nuclei|H3K9me3|rep 2 H3K9me3 GSM669933
49 GSM669968_BI.Adipose_Nuclei.H3K9me3.92.sga Adipose Nuclei|H3K9me3|rep 3 H3K9me3 GSM669968
50 GSM669976_BI.Adipose_Nuclei.H3K9me3.94.sga Adipose Nuclei|H3K9me3|rep 4 H3K9me3 GSM669976
51 GSM669981_BI.Adipose_Nuclei.H3K9me3.93.sga Adipose Nuclei|H3K9me3|rep 5 H3K9me3 GSM669981
52 GSM621401_BI.Adipose_Nuclei.Input.7.sga Adipose Nuclei|Input|rep 1 WCE GSM621401
53 GSM669934_BI.Adipose_Nuclei.Input.92.sga Adipose Nuclei|Input|rep 2 WCE GSM669934
54 GSM669940_BI.Adipose_Nuclei.Input.94.sga Adipose Nuclei|Input|rep 3 WCE GSM669940
55 GSM669984_BI.Adipose_Nuclei.Input.95.sga Adipose Nuclei|Input|rep 4 WCE GSM669984
56 GSM670043_BI.Adipose_Nuclei.Input.93.sga Adipose Nuclei|Input|rep 5 WCE GSM670043
57 GSM906394_UCSD.Adipose_Tissue.H3K27ac.STL003.sga Adipose Tissue|H3K27ac H3K27ac GSM906394
58 GSM906416_UCSD.Adipose_Tissue.Input.STL003.sga Adipose Tissue|Input Input GSM906416
59 GSM772744_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K27me3.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K27me3|rep 1 H3K27me3 GSM772744
60 GSM772819_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K27me3.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K27me3|rep 2 H3K27me3 GSM772819
61 GSM772743_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K36me3.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K36me3|rep 1 H3K36me3 GSM772743
62 GSM772818_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K36me3.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K36me3|rep 2 H3K36me3 GSM772818
63 GSM772745_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me1.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K4me1|rep 1 H3K4me1 GSM772745
64 GSM772816_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me1.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K4me1|rep 2 H3K4me1 GSM772816
65 GSM772746_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me3.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K4me3|rep 1 H3K4me3 GSM772746
66 GSM772817_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K4me3.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K4me3|rep 2 H3K4me3 GSM772817
67 GSM772741_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9ac.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K9ac|rep 1 H3K9ac GSM772741
68 GSM772812_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9ac.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K9ac|rep 2 H3K9ac GSM772812
69 GSM772742_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9me3.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K9me3|rep 1 H3K9me3 GSM772742
70 GSM772813_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.H3K9me3.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|H3K9me3|rep 2 H3K9me3 GSM772813
71 GSM772740_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.Input.93.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|Input|rep 1 WCE GSM772740
72 GSM772764_BI.Mesenchymal_Stem_Cell_Derived_Adipocyte_Cultured_Cells.Input.92.sga Mesenchymal Stem Cell Derived Adipocyte Cultured Cells|Input|rep 2 WCE GSM772764

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files