Adult gastrointestinal tract.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1112808_BI.Adult_Liver.H3K27ac.3.sga Adult Liver|H3K27ac|rep 1 H3K27ac GSM1112808
2 GSM1112809_BI.Adult_Liver.H3K27ac.4.sga Adult Liver|H3K27ac|rep 2 H3K27ac GSM1112809
3 GSM1112814_BI.Adult_Liver.H3K27me3.4.sga Adult Liver|H3K27me3|rep 1 H3K27me3 GSM1112814
4 GSM537698_BI.Adult_Liver.H3K27me3.3.sga Adult Liver|H3K27me3|rep 2 H3K27me3 GSM537698
5 GSM537707_BI.Adult_Liver.H3K27me3.5.sga Adult Liver|H3K27me3|rep 3 H3K27me3 GSM537707
6 GSM1059442_UCSD.Adult_Liver.H3K36me3.STL011.sga Adult Liver|H3K36me3|rep 1 H3K36me3 GSM1059442
7 GSM537699_BI.Adult_Liver.H3K36me3.3.sga Adult Liver|H3K36me3|rep 2 H3K36me3 GSM537699
8 GSM537708_BI.Adult_Liver.H3K36me3.5.sga Adult Liver|H3K36me3|rep 3 H3K36me3 GSM537708
9 GSM669931_BI.Adult_Liver.H3K36me3.4.sga Adult Liver|H3K36me3|rep 4 H3K36me3 GSM669931
10 GSM1059451_UCSD.Adult_Liver.H3K4me1.STL011.sga Adult Liver|H3K4me1|rep 1 H3K4me1 GSM1059451
11 GSM537706_BI.Adult_Liver.H3K4me1.3.sga Adult Liver|H3K4me1|rep 2 H3K4me1 GSM537706
12 GSM621654_BI.Adult_Liver.H3K4me1.5.sga Adult Liver|H3K4me1|rep 3 H3K4me1 GSM621654
13 GSM669972_BI.Adult_Liver.H3K4me1.4.sga Adult Liver|H3K4me1|rep 4 H3K4me1 GSM669972
14 GSM537697_BI.Adult_Liver.H3K4me3.3.sga Adult Liver|H3K4me3|rep 1 H3K4me3 GSM537697
15 GSM537709_BI.Adult_Liver.H3K4me3.5.sga Adult Liver|H3K4me3|rep 2 H3K4me3 GSM537709
16 GSM621675_BI.Adult_Liver.H3K4me3.4.sga Adult Liver|H3K4me3|rep 3 H3K4me3 GSM621675
17 GSM537705_BI.Adult_Liver.H3K9ac.3.sga Adult Liver|H3K9ac|rep 1 H3K9ac GSM537705
18 GSM621630_BI.Adult_Liver.H3K9ac.4.sga Adult Liver|H3K9ac|rep 2 H3K9ac GSM621630
19 GSM1120361_UCSD.Adult_Liver.H3K9me3.STL011.sga Adult Liver|H3K9me3|rep 1 H3K9me3 GSM1120361
20 GSM537695_BI.Adult_Liver.H3K9me3.3.sga Adult Liver|H3K9me3|rep 2 H3K9me3 GSM537695
21 GSM537710_BI.Adult_Liver.H3K9me3.5.sga Adult Liver|H3K9me3|rep 3 H3K9me3 GSM537710
22 GSM669986_BI.Adult_Liver.H3K9me3.4.sga Adult Liver|H3K9me3|rep 4 H3K9me3 GSM669986
23 GSM1059458_UCSD.Adult_Liver.Input.STL011.sga Adult Liver|Input|rep 1 Input GSM1059458
24 GSM621629_BI.Adult_Liver.Input.4.sga Adult Liver|Input|rep 2 WCE GSM621629
25 GSM669910_BI.Adult_Liver.Input.5.sga Adult Liver|Input|rep 3 WCE GSM669910
26 GSM670008_BI.Adult_Liver.Input.3.sga Adult Liver|Input|rep 4 WCE GSM670008
27 GSM1112780_BI.Colon_Smooth_Muscle.H3K27ac.156.sga Colon Smooth Muscle|H3K27ac H3K27ac GSM1112780
28 GSM772974_BI.Colon_Smooth_Muscle.H3K27me3.Donor_83_REMC_18.sga Colon Smooth Muscle|H3K27me3|rep 1 H3K27me3 GSM772974
29 GSM997259_BI.Colon_Smooth_Muscle.H3K27me3.156.sga Colon Smooth Muscle|H3K27me3|rep 2 H3K27me3 GSM997259
30 GSM772975_BI.Colon_Smooth_Muscle.H3K36me3.Donor_83_REMC_18.sga Colon Smooth Muscle|H3K36me3|rep 1 H3K36me3 GSM772975
31 GSM916031_BI.Colon_Smooth_Muscle.H3K36me3.156.sga Colon Smooth Muscle|H3K36me3|rep 2 H3K36me3 GSM916031
32 GSM997276_BI.Colon_Smooth_Muscle.H3K36me3.156.DNA_Lib_1851.sga Colon Smooth Muscle|H3K36me3|rep 3 H3K36me3 GSM997276
33 GSM772972_BI.Colon_Smooth_Muscle.H3K4me1.Donor_83_REMC_18.sga Colon Smooth Muscle|H3K4me1 H3K4me1 GSM772972
34 GSM772861_BI.Colon_Smooth_Muscle.H3K4me3.Donor_83_REMC_18.sga Colon Smooth Muscle|H3K4me3|rep 1 H3K4me3 GSM772861
35 GSM916029_BI.Colon_Smooth_Muscle.H3K4me3.156.sga Colon Smooth Muscle|H3K4me3|rep 2 H3K4me3 GSM916029
36 GSM772970_BI.Colon_Smooth_Muscle.H3K9ac.Donor_83_REMC_18.sga Colon Smooth Muscle|H3K9ac H3K9ac GSM772970
37 GSM772858_BI.Colon_Smooth_Muscle.H3K9me3.Donor_83_REMC_18.sga Colon Smooth Muscle|H3K9me3|rep 1 H3K9me3 GSM772858
38 GSM997277_BI.Colon_Smooth_Muscle.H3K9me3.156.sga Colon Smooth Muscle|H3K9me3|rep 2 H3K9me3 GSM997277
39 GSM772968_BI.Colon_Smooth_Muscle.Input.Donor_83_REMC_18.sga Colon Smooth Muscle|Input|rep 1 WCE GSM772968
40 GSM916030_BI.Colon_Smooth_Muscle.Input.156.sga Colon Smooth Muscle|Input|rep 2 WCE GSM916030
41 GSM1112779_BI.Colonic_Mucosa.H3K27ac.155.sga Colonic Mucosa|H3K27ac|rep 1 H3K27ac GSM1112779
42 GSM1112802_BI.Colonic_Mucosa.H3K27ac.32.sga Colonic Mucosa|H3K27ac|rep 2 H3K27ac GSM1112802
43 GSM621673_BI.Colonic_Mucosa.H3K27me3.32.sga Colonic Mucosa|H3K27me3|rep 1 H3K27me3 GSM621673
44 GSM916043_BI.Colonic_Mucosa.H3K27me3.155.sga Colonic Mucosa|H3K27me3|rep 2 H3K27me3 GSM916043
45 GSM621672_BI.Colonic_Mucosa.H3K36me3.32.sga Colonic Mucosa|H3K36me3|rep 1 H3K36me3 GSM621672
46 GSM916042_BI.Colonic_Mucosa.H3K36me3.155.sga Colonic Mucosa|H3K36me3|rep 2 H3K36me3 GSM916042
47 GSM621670_BI.Colonic_Mucosa.H3K4me1.32.sga Colonic Mucosa|H3K4me1|rep 1 H3K4me1 GSM621670
48 GSM916046_BI.Colonic_Mucosa.H3K4me1.155.sga Colonic Mucosa|H3K4me1|rep 2 H3K4me1 GSM916046
49 GSM621671_BI.Colonic_Mucosa.H3K4me3.32.sga Colonic Mucosa|H3K4me3|rep 1 H3K4me3 GSM621671
50 GSM916045_BI.Colonic_Mucosa.H3K4me3.155.sga Colonic Mucosa|H3K4me3|rep 2 H3K4me3 GSM916045
51 GSM621674_BI.Colonic_Mucosa.H3K9ac.32.sga Colonic Mucosa|H3K9ac|rep 1 H3K9ac GSM621674
52 GSM916044_BI.Colonic_Mucosa.H3K9ac.155.sga Colonic Mucosa|H3K9ac|rep 2 H3K9ac GSM916044
53 GSM621668_BI.Colonic_Mucosa.H3K9me3.32.sga Colonic Mucosa|H3K9me3|rep 1 H3K9me3 GSM621668
54 GSM916048_BI.Colonic_Mucosa.H3K9me3.155.sga Colonic Mucosa|H3K9me3|rep 2 H3K9me3 GSM916048
55 GSM621669_BI.Colonic_Mucosa.Input.32.sga Colonic Mucosa|Input|rep 1 WCE GSM621669
56 GSM916047_BI.Colonic_Mucosa.Input.155.sga Colonic Mucosa|Input|rep 2 WCE GSM916047
57 GSM1112790_BI.Duodenum_Mucosa.H3K27ac.159.sga Duodenum Mucosa|H3K27ac H3K27ac GSM1112790
58 GSM621460_BI.Duodenum_Mucosa.H3K27me3.61.sga Duodenum Mucosa|H3K27me3|rep 1 H3K27me3 GSM621460
59 GSM916016_BI.Duodenum_Mucosa.H3K27me3.159.sga Duodenum Mucosa|H3K27me3|rep 2 H3K27me3 GSM916016
60 GSM621421_BI.Duodenum_Mucosa.H3K36me3.61.sga Duodenum Mucosa|H3K36me3|rep 1 H3K36me3 GSM621421
61 GSM916020_BI.Duodenum_Mucosa.H3K36me3.159.sga Duodenum Mucosa|H3K36me3|rep 2 H3K36me3 GSM916020
62 GSM621403_BI.Duodenum_Mucosa.H3K4me1.61.sga Duodenum Mucosa|H3K4me1|rep 1 H3K4me1 GSM621403
63 GSM916017_BI.Duodenum_Mucosa.H3K4me1.159.sga Duodenum Mucosa|H3K4me1|rep 2 H3K4me1 GSM916017
64 GSM621432_BI.Duodenum_Mucosa.H3K4me3.61.sga Duodenum Mucosa|H3K4me3|rep 1 H3K4me3 GSM621432
65 GSM916019_BI.Duodenum_Mucosa.H3K4me3.159.sga Duodenum Mucosa|H3K4me3|rep 2 H3K4me3 GSM916019
66 GSM621445_BI.Duodenum_Mucosa.H3K9ac.61.sga Duodenum Mucosa|H3K9ac|rep 1 H3K9ac GSM621445
67 GSM916018_BI.Duodenum_Mucosa.H3K9ac.159.sga Duodenum Mucosa|H3K9ac|rep 2 H3K9ac GSM916018
68 GSM621395_BI.Duodenum_Mucosa.H3K9me3.61.sga Duodenum Mucosa|H3K9me3|rep 1 H3K9me3 GSM621395
69 GSM772889_BI.Duodenum_Mucosa.H3K9me3.159.sga Duodenum Mucosa|H3K9me3|rep 2 H3K9me3 GSM772889
70 GSM621406_BI.Duodenum_Mucosa.Input.61.sga Duodenum Mucosa|Input|rep 1 WCE GSM621406
71 GSM772890_BI.Duodenum_Mucosa.Input.159.sga Duodenum Mucosa|Input|rep 2 WCE GSM772890
72 GSM772908_BI.Duodenum_Smooth_Muscle.H3K27ac.160.sga Duodenum Smooth Muscle|H3K27ac H3K27ac GSM772908
73 GSM772840_BI.Duodenum_Smooth_Muscle.H3K27me3.160.sga Duodenum Smooth Muscle|H3K27me3|rep 1 H3K27me3 GSM772840
74 GSM916032_BI.Duodenum_Smooth_Muscle.H3K27me3.Donor_174_REMC_28.sga Duodenum Smooth Muscle|H3K27me3|rep 2 H3K27me3 GSM916032
75 GSM772838_BI.Duodenum_Smooth_Muscle.H3K36me3.160.sga Duodenum Smooth Muscle|H3K36me3|rep 1 H3K36me3 GSM772838
76 GSM916036_BI.Duodenum_Smooth_Muscle.H3K36me3.Donor_174_REMC_28.sga Duodenum Smooth Muscle|H3K36me3|rep 2 H3K36me3 GSM916036
77 GSM772837_BI.Duodenum_Smooth_Muscle.H3K4me1.160.sga Duodenum Smooth Muscle|H3K4me1|rep 1 H3K4me1 GSM772837
78 GSM916033_BI.Duodenum_Smooth_Muscle.H3K4me1.Donor_174_REMC_28.sga Duodenum Smooth Muscle|H3K4me1|rep 2 H3K4me1 GSM916033
79 GSM772839_BI.Duodenum_Smooth_Muscle.H3K4me3.160.sga Duodenum Smooth Muscle|H3K4me3|rep 1 H3K4me3 GSM772839
80 GSM916014_BI.Duodenum_Smooth_Muscle.H3K4me3.Donor_174_REMC_28.sga Duodenum Smooth Muscle|H3K4me3|rep 2 H3K4me3 GSM916014
81 GSM1112788_BI.Duodenum_Smooth_Muscle.H3K9me3.Donor_174_REMC_28.sga Duodenum Smooth Muscle|H3K9me3|rep 1 H3K9me3 GSM1112788
82 GSM772909_BI.Duodenum_Smooth_Muscle.H3K9me3.160.sga Duodenum Smooth Muscle|H3K9me3|rep 2 H3K9me3 GSM772909
83 GSM1112789_BI.Duodenum_Smooth_Muscle.Input.Donor_174_REMC_28.sga Duodenum Smooth Muscle|Input|rep 1 Input GSM1112789
84 GSM772910_BI.Duodenum_Smooth_Muscle.Input.160.sga Duodenum Smooth Muscle|Input|rep 2 WCE GSM772910
85 GSM1013127_UCSD.Esophagus.H3K27ac.STL002.sga Esophagus|H3K27ac|rep 1 H3K27ac GSM1013127
86 GSM906393_UCSD.Esophagus.H3K27ac.STL003.sga Esophagus|H3K27ac|rep 2 H3K27ac GSM906393
87 GSM906399_UCSD.Esophagus.H3K27me3.STL003.sga Esophagus|H3K27me3 H3K27me3 GSM906399
88 GSM1120346_UCSD.Esophagus.H3K36me3.STL002.sga Esophagus|H3K36me3|rep 1 H3K36me3 GSM1120346
89 GSM910567_UCSD.Esophagus.H3K36me3.STL003.sga Esophagus|H3K36me3|rep 2 H3K36me3 GSM910567
90 GSM1120349_UCSD.Esophagus.H3K4me1.STL002.sga Esophagus|H3K4me1|rep 1 H3K4me1 GSM1120349
91 GSM910573_UCSD.Esophagus.H3K4me1.STL003.sga Esophagus|H3K4me1|rep 2 H3K4me1 GSM910573
92 GSM910578_UCSD.Esophagus.H3K4me3.STL003.sga Esophagus|H3K4me3 H3K4me3 GSM910578
93 GSM1120359_UCSD.Esophagus.H3K9me3.STL002.sga Esophagus|H3K9me3|rep 1 H3K9me3 GSM1120359
94 GSM910584_UCSD.Esophagus.H3K9me3.STL003.sga Esophagus|H3K9me3|rep 2 H3K9me3 GSM910584
95 GSM1120363_UCSD.Esophagus.Input.STL002.sga Esophagus|Input|rep 1 Input GSM1120363
96 GSM1120364_UCSD.Esophagus.Input.STL002.sga Esophagus|Input|rep 2 Input GSM1120364
97 GSM906415_UCSD.Esophagus.Input.STL003.sga Esophagus|Input|rep 3 Input GSM906415
98 GSM1013122_UCSD.Gastric.H3K27ac.STL001.sga Gastric|H3K27ac|rep 1 H3K27ac GSM1013122
99 GSM1013128_UCSD.Gastric.H3K27ac.STL002.sga Gastric|H3K27ac|rep 2 H3K27ac GSM1013128
100 GSM910555_UCSD.Gastric.H3K27ac.STL003.sga Gastric|H3K27ac|rep 3 H3K27ac GSM910555
101 GSM910561_UCSD.Gastric.H3K27me3.STL003.sga Gastric|H3K27me3 H3K27me3 GSM910561
102 GSM1127180_UCSD.Gastric.H3K36me3.STL001.sga Gastric|H3K36me3|rep 1 H3K36me3 GSM1127180
103 GSM910568_UCSD.Gastric.H3K36me3.STL003.sga Gastric|H3K36me3|rep 2 H3K36me3 GSM910568
104 GSM1013147_UCSD.Gastric.H3K4me1.STL001.sga Gastric|H3K4me1|rep 1 H3K4me1 GSM1013147
105 GSM910574_UCSD.Gastric.H3K4me1.STL003.sga Gastric|H3K4me1|rep 2 H3K4me1 GSM910574
106 GSM910579_UCSD.Gastric.H3K4me3.STL003.sga Gastric|H3K4me3 H3K4me3 GSM910579
107 GSM1013159_UCSD.Gastric.H3K9me3.STL001.sga Gastric|H3K9me3|rep 1 H3K9me3 GSM1013159
108 GSM910585_UCSD.Gastric.H3K9me3.STL003.sga Gastric|H3K9me3|rep 2 H3K9me3 GSM910585
109 GSM1013164_UCSD.Gastric.Input.STL001.sga Gastric|Input|rep 1 Input GSM1013164
110 GSM1013170_UCSD.Gastric.Input.STL002.sga Gastric|Input|rep 2 Input GSM1013170
111 GSM956032_UCSD.Gastric.Input.STL003.sga Gastric|Input|rep 3 Input GSM956032
112 GSM1127061_UCSF-UBC.Pancreatic_Islets.H3K27ac.ZGI_213.sga Pancreatic Islets|H3K27ac|rep 1 H3K27ac GSM1127061
113 GSM1127071_UCSF-UBC.Pancreatic_Islets.H3K27ac.ZD4_273.sga Pancreatic Islets|H3K27ac|rep 2 H3K27ac GSM1127071
114 GSM1127074_UCSF-UBC.Pancreatic_Islets.H3K27me3.ZGI_213.sga Pancreatic Islets|H3K27me3|rep 1 H3K27me3 GSM1127074
115 GSM537658_BI.Pancreatic_Islets.H3K27me3.pancreatic_islets_normal_3_27_09.sga Pancreatic Islets|H3K27me3|rep 2 H3K27me3 GSM537658
116 GSM1127069_UCSF-UBC.Pancreatic_Islets.H3K36me3.ZGI_213.sga Pancreatic Islets|H3K36me3|rep 1 H3K36me3 GSM1127069
117 GSM537661_BI.Pancreatic_Islets.H3K36me3.pancreatic_islets_normal_3_27_09.sga Pancreatic Islets|H3K36me3|rep 2 H3K36me3 GSM537661
118 GSM1127087_UCSF-UBC.Pancreatic_Islets.H3K4me1.ZGI_213.sga Pancreatic Islets|H3K4me1|rep 1 H3K4me1 GSM1127087
119 GSM537642_BI.Pancreatic_Islets.H3K4me1.pancreatic_islets_normal_3_27_09.sga Pancreatic Islets|H3K4me1|rep 2 H3K4me1 GSM537642
120 GSM1127067_UCSF-UBC.Pancreatic_Islets.H3K4me3.ZD4_273.sga Pancreatic Islets|H3K4me3|rep 1 H3K4me3 GSM1127067
121 GSM1127082_UCSF-UBC.Pancreatic_Islets.H3K4me3.ZGI_213.sga Pancreatic Islets|H3K4me3|rep 2 H3K4me3 GSM1127082
122 GSM537643_BI.Pancreatic_Islets.H3K4me3.pancreatic_islets_normal_3_27_09.sga Pancreatic Islets|H3K4me3|rep 3 H3K4me3 GSM537643
123 GSM537660_BI.Pancreatic_Islets.H3K9ac.pancreatic_islets_normal_3_27_09.sga Pancreatic Islets|H3K9ac H3K9ac GSM537660
124 GSM1127086_UCSF-UBC.Pancreatic_Islets.H3K9me3.ZGI_213.sga Pancreatic Islets|H3K9me3|rep 1 H3K9me3 GSM1127086
125 GSM537686_BI.Pancreatic_Islets.H3K9me3.pancreatic_islets_normal_0_0_00.sga Pancreatic Islets|H3K9me3|rep 2 H3K9me3 GSM537686
126 GSM1127092_UCSF-UBC.Pancreatic_Islets.Input.ZGI_213.sga Pancreatic Islets|Input|rep 1 Input GSM1127092
127 GSM537659_BI.Pancreatic_Islets.Input.pancreatic_islets_normal_3_27_09.sga Pancreatic Islets|Input|rep 2 WCE GSM537659
128 GSM1112795_BI.Rectal_Mucosa.H3K27ac.29.sga Rectal Mucosa|H3K27ac|rep 1 H3K27ac GSM1112795
129 GSM1112801_BI.Rectal_Mucosa.H3K27ac.31.sga Rectal Mucosa|H3K27ac|rep 2 H3K27ac GSM1112801
130 GSM621650_BI.Rectal_Mucosa.H3K27me3.29.sga Rectal Mucosa|H3K27me3|rep 1 H3K27me3 GSM621650
131 GSM621676_BI.Rectal_Mucosa.H3K27me3.31.sga Rectal Mucosa|H3K27me3|rep 2 H3K27me3 GSM621676
132 GSM621646_BI.Rectal_Mucosa.H3K36me3.29.sga Rectal Mucosa|H3K36me3|rep 1 H3K36me3 GSM621646
133 GSM621687_BI.Rectal_Mucosa.H3K36me3.31.sga Rectal Mucosa|H3K36me3|rep 2 H3K36me3 GSM621687
134 GSM621639_BI.Rectal_Mucosa.H3K4me1.29.sga Rectal Mucosa|H3K4me1|rep 1 H3K4me1 GSM621639
135 GSM621659_BI.Rectal_Mucosa.H3K4me1.31.sga Rectal Mucosa|H3K4me1|rep 2 H3K4me1 GSM621659
136 GSM621643_BI.Rectal_Mucosa.H3K4me3.29.sga Rectal Mucosa|H3K4me3|rep 1 H3K4me3 GSM621643
137 GSM621658_BI.Rectal_Mucosa.H3K4me3.31.sga Rectal Mucosa|H3K4me3|rep 2 H3K4me3 GSM621658
138 GSM621636_BI.Rectal_Mucosa.H3K9ac.29.sga Rectal Mucosa|H3K9ac|rep 1 H3K9ac GSM621636
139 GSM669949_BI.Rectal_Mucosa.H3K9ac.31.sga Rectal Mucosa|H3K9ac|rep 2 H3K9ac GSM669949
140 GSM621633_BI.Rectal_Mucosa.H3K9me3.29.sga Rectal Mucosa|H3K9me3|rep 1 H3K9me3 GSM621633
141 GSM621678_BI.Rectal_Mucosa.H3K9me3.31.sga Rectal Mucosa|H3K9me3|rep 2 H3K9me3 GSM621678
142 GSM621647_BI.Rectal_Mucosa.Input.29.sga Rectal Mucosa|Input|rep 1 WCE GSM621647
143 GSM621677_BI.Rectal_Mucosa.Input.31.sga Rectal Mucosa|Input|rep 2 WCE GSM621677
144 GSM1112796_BI.Rectal_Smooth_Muscle.H3K27ac.30.sga Rectal Smooth Muscle|H3K27ac H3K27ac GSM1112796
145 GSM621655_BI.Rectal_Smooth_Muscle.H3K27me3.30.sga Rectal Smooth Muscle|H3K27me3 H3K27me3 GSM621655
146 GSM621656_BI.Rectal_Smooth_Muscle.H3K36me3.30.sga Rectal Smooth Muscle|H3K36me3 H3K36me3 GSM621656
147 GSM669964_BI.Rectal_Smooth_Muscle.H3K4me1.30.sga Rectal Smooth Muscle|H3K4me1 H3K4me1 GSM669964
148 GSM621662_BI.Rectal_Smooth_Muscle.H3K4me3.30.sga Rectal Smooth Muscle|H3K4me3 H3K4me3 GSM621662
149 GSM621661_BI.Rectal_Smooth_Muscle.H3K9ac.30.sga Rectal Smooth Muscle|H3K9ac H3K9ac GSM621661
150 GSM621660_BI.Rectal_Smooth_Muscle.H3K9me3.30.sga Rectal Smooth Muscle|H3K9me3 H3K9me3 GSM621660
151 GSM621657_BI.Rectal_Smooth_Muscle.Input.30.sga Rectal Smooth Muscle|Input WCE GSM621657
152 GSM910559_UCSD.Sigmoid_Colon.H3K27ac.STL003.sga Sigmoid Colon|H3K27ac|rep 1 H3K27ac GSM910559
153 GSM915331_UCSD.Sigmoid_Colon.H3K27ac.STL001.sga Sigmoid Colon|H3K27ac|rep 2 H3K27ac GSM915331
154 GSM910564_UCSD.Sigmoid_Colon.H3K27me3.STL003.sga Sigmoid Colon|H3K27me3|rep 1 H3K27me3 GSM910564
155 GSM915333_UCSD.Sigmoid_Colon.H3K27me3.STL001.sga Sigmoid Colon|H3K27me3|rep 2 H3K27me3 GSM915333
156 GSM956013_UCSD.Sigmoid_Colon.H3K36me3.STL001.sga Sigmoid Colon|H3K36me3|rep 1 H3K36me3 GSM956013
157 GSM956016_UCSD.Sigmoid_Colon.H3K36me3.STL003.sga Sigmoid Colon|H3K36me3|rep 2 H3K36me3 GSM956016
158 GSM956020_UCSD.Sigmoid_Colon.H3K4me1.STL001.sga Sigmoid Colon|H3K4me1|rep 1 H3K4me1 GSM956020
159 GSM956023_UCSD.Sigmoid_Colon.H3K4me1.STL003.sga Sigmoid Colon|H3K4me1|rep 2 H3K4me1 GSM956023
160 GSM956024_UCSD.Sigmoid_Colon.H3K4me3.STL001.sga Sigmoid Colon|H3K4me3 H3K4me3 GSM956024
161 GSM1120358_UCSD.Sigmoid_Colon.H3K9me3.STL001.sga Sigmoid Colon|H3K9me3|rep 1 H3K9me3 GSM1120358
162 GSM956027_UCSD.Sigmoid_Colon.H3K9me3.STL003.sga Sigmoid Colon|H3K9me3|rep 2 H3K9me3 GSM956027
163 GSM1059456_UCSD.Sigmoid_Colon.Input.STL001.sga Sigmoid Colon|Input|rep 1 Input GSM1059456
164 GSM1120362_UCSD.Sigmoid_Colon.Input.STL001.sga Sigmoid Colon|Input|rep 2 Input GSM1120362
165 GSM906422_UCSD.Sigmoid_Colon.Input.STL003.sga Sigmoid Colon|Input|rep 3 Input GSM906422
166 GSM1013131_UCSD.Small_Intestine.H3K27ac.STL002.sga Small Intestine|H3K27ac|rep 1 H3K27ac GSM1013131
167 GSM1127172_UCSD.Small_Intestine.H3K27ac.STL003.sga Small Intestine|H3K27ac|rep 2 H3K27ac GSM1127172
168 GSM915330_UCSD.Small_Intestine.H3K27ac.STL001.sga Small Intestine|H3K27ac|rep 3 H3K27ac GSM915330
169 GSM915332_UCSD.Small_Intestine.H3K27me3.STL001.sga Small Intestine|H3K27me3 H3K27me3 GSM915332
170 GSM1120347_UCSD.Small_Intestine.H3K36me3.STL002.sga Small Intestine|H3K36me3|rep 1 H3K36me3 GSM1120347
171 GSM910565_UCSD.Small_Intestine.H3K36me3.STL001.sga Small Intestine|H3K36me3|rep 2 H3K36me3 GSM910565
172 GSM1120350_UCSD.Small_Intestine.H3K4me1.STL002.sga Small Intestine|H3K4me1|rep 1 H3K4me1 GSM1120350
173 GSM956019_UCSD.Small_Intestine.H3K4me1.STL001.sga Small Intestine|H3K4me1|rep 2 H3K4me1 GSM956019
174 GSM906407_UCSD.Small_Intestine.H3K4me3.STL003.sga Small Intestine|H3K4me3 H3K4me3 GSM906407
175 GSM1013160_UCSD.Small_Intestine.H3K9me3.STL001.sga Small Intestine|H3K9me3|rep 1 H3K9me3 GSM1013160
176 GSM1120360_UCSD.Small_Intestine.H3K9me3.STL002.sga Small Intestine|H3K9me3|rep 2 H3K9me3 GSM1120360
177 GSM1120365_UCSD.Small_Intestine.Input.STL002.sga Small Intestine|Input|rep 1 Input GSM1120365
178 GSM915337_UCSD.Small_Intestine.Input.STL001.sga Small Intestine|Input|rep 2 Input GSM915337
179 GSM772969_BI.Stomach_Mucosa.H3K27me3.157.sga Stomach Mucosa|H3K27me3 H3K27me3 GSM772969
180 GSM772936_BI.Stomach_Mucosa.H3K36me3.157.sga Stomach Mucosa|H3K36me3 H3K36me3 GSM772936
181 GSM772907_BI.Stomach_Mucosa.H3K4me1.157.sga Stomach Mucosa|H3K4me1 H3K4me1 GSM772907
182 GSM772942_BI.Stomach_Mucosa.H3K4me3.157.sga Stomach Mucosa|H3K4me3 H3K4me3 GSM772942
183 GSM772941_BI.Stomach_Mucosa.H3K9ac.157.sga Stomach Mucosa|H3K9ac H3K9ac GSM772941
184 GSM772940_BI.Stomach_Mucosa.H3K9me3.157.sga Stomach Mucosa|H3K9me3 H3K9me3 GSM772940
185 GSM772939_BI.Stomach_Mucosa.Input.157.sga Stomach Mucosa|Input WCE GSM772939
186 GSM916065_BI.Stomach_Smooth_Muscle.H3K27ac.28.sga Stomach Smooth Muscle|H3K27ac H3K27ac GSM916065
187 GSM1112783_BI.Stomach_Smooth_Muscle.H3K27me3.161.sga Stomach Smooth Muscle|H3K27me3|rep 1 H3K27me3 GSM1112783
188 GSM621635_BI.Stomach_Smooth_Muscle.H3K27me3.28.sga Stomach Smooth Muscle|H3K27me3|rep 2 H3K27me3 GSM621635
189 GSM621649_BI.Stomach_Smooth_Muscle.H3K36me3.28.sga Stomach Smooth Muscle|H3K36me3|rep 1 H3K36me3 GSM621649
190 GSM772891_BI.Stomach_Smooth_Muscle.H3K36me3.161.sga Stomach Smooth Muscle|H3K36me3|rep 2 H3K36me3 GSM772891
191 GSM621642_BI.Stomach_Smooth_Muscle.H3K4me1.28.sga Stomach Smooth Muscle|H3K4me1 H3K4me1 GSM621642
192 GSM621645_BI.Stomach_Smooth_Muscle.H3K4me3.28.sga Stomach Smooth Muscle|H3K4me3|rep 1 H3K4me3 GSM621645
193 GSM772887_BI.Stomach_Smooth_Muscle.H3K4me3.161.sga Stomach Smooth Muscle|H3K4me3|rep 2 H3K4me3 GSM772887
194 GSM669921_BI.Stomach_Smooth_Muscle.H3K9ac.28.sga Stomach Smooth Muscle|H3K9ac|rep 1 H3K9ac GSM669921
195 GSM772886_BI.Stomach_Smooth_Muscle.H3K9ac.161.sga Stomach Smooth Muscle|H3K9ac|rep 2 H3K9ac GSM772886
196 GSM621631_BI.Stomach_Smooth_Muscle.H3K9me3.28.sga Stomach Smooth Muscle|H3K9me3|rep 1 H3K9me3 GSM621631
197 GSM772888_BI.Stomach_Smooth_Muscle.H3K9me3.161.sga Stomach Smooth Muscle|H3K9me3|rep 2 H3K9me3 GSM772888
198 GSM621652_BI.Stomach_Smooth_Muscle.Input.28.sga Stomach Smooth Muscle|Input|rep 1 WCE GSM621652
199 GSM772883_BI.Stomach_Smooth_Muscle.Input.161.sga Stomach Smooth Muscle|Input|rep 2 WCE GSM772883

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027320_UW.Gastric.ChromatinAccessibility.STL001.DNase.DS20260.sga Gastric|DNase-seq|rep 1 DNase-seq GSM1027320
2 GSM1027325_UW.Gastric.ChromatinAccessibility.STL003.DNase.DS20748.sga Gastric|DNase-seq|rep 2 DNase-seq GSM1027325
3 GSM1027327_UW.Small_Intestine.ChromatinAccessibility.STL003.DNase.DS20770.sga Small Intestine|DNase-seq DNase-seq GSM1027327

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files