Fetal gastrointestinal tract.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM1058765_UW.Fetal_Intestine_Large.H3K27ac.H-24595.Histone.DS21780.sga Fetal Intestine Large|H3K27ac H3K27ac GSM1058765
2 GSM1058768_UW.Fetal_Intestine_Large.H3K27me3.H-24595.Histone.DS22553.sga Fetal Intestine Large|H3K27me3|rep 1 H3K27me3 GSM1058768
3 GSM1125768_UW.Fetal_Intestine_Large.H3K27me3.H-24595.Histone.DS23306.sga Fetal Intestine Large|H3K27me3|rep 2 H3K27me3 GSM1125768
4 GSM1058771_UW.Fetal_Intestine_Large.H3K36me3.H-24595.Histone.DS22554.sga Fetal Intestine Large|H3K36me3|rep 1 H3K36me3 GSM1058771
5 GSM1125769_UW.Fetal_Intestine_Large.H3K36me3.H-24595.Histone.DS23307.sga Fetal Intestine Large|H3K36me3|rep 2 H3K36me3 GSM1125769
6 GSM1058775_UW.Fetal_Intestine_Large.H3K4me1.H-24595.Histone.DS22552.sga Fetal Intestine Large|H3K4me1 H3K4me1 GSM1058775
7 GSM1058779_UW.Fetal_Intestine_Large.H3K4me3.H-24595.Histone.DS21530.sga Fetal Intestine Large|H3K4me3 H3K4me3 GSM1058779
8 GSM1125770_UW.Fetal_Intestine_Large.H3K9me3.H-24595.Histone.DS22901.sga Fetal Intestine Large|H3K9me3 H3K9me3 GSM1125770
9 GSM1058786_UW.Fetal_Intestine_Large.Input.H-24595.Histone.DS21506.sga Fetal Intestine Large|Input Input GSM1058786
10 GSM1058766_UW.Fetal_Intestine_Small.H3K27ac.H-24595.Histone.DS21781.sga Fetal Intestine Small|H3K27ac H3K27ac GSM1058766
11 GSM1058769_UW.Fetal_Intestine_Small.H3K27me3.H-24595.Histone.DS22556.sga Fetal Intestine Small|H3K27me3 H3K27me3 GSM1058769
12 GSM1058772_UW.Fetal_Intestine_Small.H3K36me3.H-24595.Histone.DS22557.sga Fetal Intestine Small|H3K36me3 H3K36me3 GSM1058772
13 GSM1058776_UW.Fetal_Intestine_Small.H3K4me1.H-24595.Histone.DS22555.sga Fetal Intestine Small|H3K4me1 H3K4me1 GSM1058776
14 GSM1058780_UW.Fetal_Intestine_Small.H3K4me3.H-24595.Histone.DS21533.sga Fetal Intestine Small|H3K4me3 H3K4me3 GSM1058780
15 GSM1102802_UW.Fetal_Intestine_Small.H3K9me3.H-24595.Histone.DS22902.sga Fetal Intestine Small|H3K9me3 H3K9me3 GSM1102802
16 GSM1058787_UW.Fetal_Intestine_Small.Input.H-24595.Histone.DS21507.sga Fetal Intestine Small|Input Input GSM1058787
17 GSM1102783_UW.Fetal_Stomach.H3K27ac.H-24683.Histone.DS22929.sga Fetal Stomach|H3K27ac H3K27ac GSM1102783
18 GSM1102786_UW.Fetal_Stomach.H3K27me3.H-24776.Histone.DS22599.sga Fetal Stomach|H3K27me3 H3K27me3 GSM1102786
19 GSM1102789_UW.Fetal_Stomach.H3K36me3.H-24639.Histone.DS22600.sga Fetal Stomach|H3K36me3 H3K36me3 GSM1102789
20 GSM1102794_UW.Fetal_Stomach.H3K4me1.H-24776.Histone.DS22597.sga Fetal Stomach|H3K4me1 H3K4me1 GSM1102794
21 GSM1102800_UW.Fetal_Stomach.H3K4me3.H-24639.Histone.DS22598.sga Fetal Stomach|H3K4me3 H3K4me3 GSM1102800
22 GSM1102804_UW.Fetal_Stomach.H3K9me3.H-24754.Histone.DS22928.sga Fetal Stomach|H3K9me3 H3K9me3 GSM1102804
23 GSM1102808_UW.Fetal_Stomach.Input.H-24639.Histone.DS22596.sga Fetal Stomach|Input Input GSM1102808

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1036260_UW.Fetal_Intestine_Large.Digital_Genomic_Footprinting.H-23769.DGF.DS17313.sga Fetal Intestine Large|DNase-HS DNase-HS GSM1036260
2 GSM665815_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23500.DS16027.sga Fetal Intestine Large|DNase-seq|rep 1 DNase-seq GSM665815
3 GSM774217_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23887.DS17647.sga Fetal Intestine Large|DNase-seq|rep 10 DNase-seq GSM774217
4 GSM774220_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23914.DS17748.sga Fetal Intestine Large|DNase-seq|rep 11 DNase-seq GSM774220
5 GSM774228_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23964.DS17841.sga Fetal Intestine Large|DNase-seq|rep 12 DNase-seq GSM774228
6 GSM774233_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-24005.DS17990.sga Fetal Intestine Large|DNase-seq|rep 13 DNase-seq GSM774233
7 GSM817162_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23744.DS17094.sga Fetal Intestine Large|DNase-seq|rep 14 DNase-seq GSM817162
8 GSM817188_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-24111.DS18499.sga Fetal Intestine Large|DNase-seq|rep 15 DNase-seq GSM817188
9 GSM665818_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23524.DS16164.sga Fetal Intestine Large|DNase-seq|rep 2 DNase-seq GSM665818
10 GSM665826_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23604.DS16563.sga Fetal Intestine Large|DNase-seq|rep 3 DNase-seq GSM665826
11 GSM701490_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23758.DS17157.sga Fetal Intestine Large|DNase-seq|rep 4 DNase-seq GSM701490
12 GSM701495_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23769.DS17313.sga Fetal Intestine Large|DNase-seq|rep 5 DNase-seq GSM701495
13 GSM701514_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23855.DS17502.sga Fetal Intestine Large|DNase-seq|rep 6 DNase-seq GSM701514
14 GSM701531_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23941.DS17785.sga Fetal Intestine Large|DNase-seq|rep 7 DNase-seq GSM701531
15 GSM774213_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23808.DS17422.sga Fetal Intestine Large|DNase-seq|rep 8 DNase-seq GSM774213
16 GSM774214_UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23833.DS17462.sga Fetal Intestine Large|DNase-seq|rep 9 DNase-seq GSM774214
17 GSM1027348_UW.Fetal_Intestine_Small.Digital_Genomic_Footprinting.H-23769.DGF.DS17317.sga Fetal Intestine Small|DNase-HS DNase-HS GSM1027348
18 GSM665825_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23604.DS16559.sga Fetal Intestine Small|DNase-seq|rep 1 DNase-seq GSM665825
19 GSM774225_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23941.DS17808.sga Fetal Intestine Small|DNase-seq|rep 10 DNase-seq GSM774225
20 GSM774229_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23864.DS17844.sga Fetal Intestine Small|DNase-seq|rep 11 DNase-seq GSM774229
21 GSM817161_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23724.DS16975.sga Fetal Intestine Small|DNase-seq|rep 12 DNase-seq GSM817161
22 GSM817187_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-24111.DS18495.sga Fetal Intestine Small|DNase-seq|rep 13 DNase-seq GSM817187
23 GSM665835_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23663.DS16822.sga Fetal Intestine Small|DNase-seq|rep 2 DNase-seq GSM665835
24 GSM701487_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23640.DS16712.sga Fetal Intestine Small|DNase-seq|rep 3 DNase-seq GSM701487
25 GSM701496_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23769.DS17317.sga Fetal Intestine Small|DNase-seq|rep 4 DNase-seq GSM701496
26 GSM701504_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23808.DS17425.sga Fetal Intestine Small|DNase-seq|rep 5 DNase-seq GSM701504
27 GSM701530_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23914.DS17763.sga Fetal Intestine Small|DNase-seq|rep 6 DNase-seq GSM701530
28 GSM774205_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23744.DS17092.sga Fetal Intestine Small|DNase-seq|rep 7 DNase-seq GSM774205
29 GSM774210_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23758.DS17150.sga Fetal Intestine Small|DNase-seq|rep 8 DNase-seq GSM774210
30 GSM774216_UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23887.DS17643.sga Fetal Intestine Small|DNase-seq|rep 9 DNase-seq GSM774216
31 GSM1024606_UW.Fetal_Stomach.ChromatinAccessibility.H-24342.DS19933.sga Fetal Stomach|DNase-seq|rep 1 DNase-seq GSM1024606
32 GSM774232_UW.Fetal_Stomach.ChromatinAccessibility.H-24005.DS17963.sga Fetal Stomach|DNase-seq|rep 10 DNase-seq GSM774232
33 GSM817173_UW.Fetal_Stomach.ChromatinAccessibility.H-24078.DS18389.sga Fetal Stomach|DNase-seq|rep 11 DNase-seq GSM817173
34 GSM817199_UW.Fetal_Stomach.ChromatinAccessibility.H-24125.DS18821.sga Fetal Stomach|DNase-seq|rep 12 DNase-seq GSM817199
35 GSM878660_UW.Fetal_Stomach.ChromatinAccessibility.H-24401.DS20349.sga Fetal Stomach|DNase-seq|rep 13 DNase-seq GSM878660
36 GSM878665_UW.Fetal_Stomach.ChromatinAccessibility.H-24507.DS20546.sga Fetal Stomach|DNase-seq|rep 14 DNase-seq GSM878665
37 GSM1027318_UW.Fetal_Stomach.ChromatinAccessibility.H-24365.DNase.DS20079.sga Fetal Stomach|DNase-seq|rep 2 DNase-seq GSM1027318
38 GSM1027331_UW.Fetal_Stomach.ChromatinAccessibility.H-24510.DNase.DS20791.sga Fetal Stomach|DNase-seq|rep 3 DNase-seq GSM1027331
39 GSM701498_UW.Fetal_Stomach.ChromatinAccessibility.H-23769.DS17325.sga Fetal Stomach|DNase-seq|rep 4 DNase-seq GSM701498
40 GSM701521_UW.Fetal_Stomach.ChromatinAccessibility.H-23887.DS17659.sga Fetal Stomach|DNase-seq|rep 5 DNase-seq GSM701521
41 GSM701528_UW.Fetal_Stomach.ChromatinAccessibility.H-23914.DS17750.sga Fetal Stomach|DNase-seq|rep 6 DNase-seq GSM701528
42 GSM701538_UW.Fetal_Stomach.ChromatinAccessibility.H-23964.DS17878.sga Fetal Stomach|DNase-seq|rep 7 DNase-seq GSM701538
43 GSM774202_UW.Fetal_Stomach.ChromatinAccessibility.H-23589.DS16530.sga Fetal Stomach|DNase-seq|rep 8 DNase-seq GSM774202
44 GSM774212_UW.Fetal_Stomach.ChromatinAccessibility.H-23758.DS17172.sga Fetal Stomach|DNase-seq|rep 9 DNase-seq GSM774212

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

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