Adult heart.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM906392_UCSD.Aorta.H3K27ac.STL003.sga Aorta|H3K27ac H3K27ac GSM906392
2 GSM910560_UCSD.Aorta.H3K27me3.STL003.sga Aorta|H3K27me3 H3K27me3 GSM910560
3 GSM1059440_UCSD.Aorta.H3K36me3.STL002.sga Aorta|H3K36me3|rep 1 H3K36me3 GSM1059440
4 GSM910566_UCSD.Aorta.H3K36me3.STL003.sga Aorta|H3K36me3|rep 2 H3K36me3 GSM910566
5 GSM1013150_UCSD.Aorta.H3K4me1.STL003.sga Aorta|H3K4me1|rep 1 H3K4me1 GSM1013150
6 GSM1059448_UCSD.Aorta.H3K4me1.STL002.sga Aorta|H3K4me1|rep 2 H3K4me1 GSM1059448
7 GSM906410_UCSD.Aorta.H3K9me3.STL003.sga Aorta|H3K9me3 H3K9me3 GSM906410
8 GSM1013169_UCSD.Aorta.Input.STL002.sga Aorta|Input|rep 1 Input GSM1013169
9 GSM906413_UCSD.Aorta.Input.STL003.sga Aorta|Input|rep 2 Input GSM906413
10 GSM1127173_UCSD.Left_Ventricle.H3K27ac.STL011.sga Left Ventricle|H3K27ac|rep 1 H3K27ac GSM1127173
11 GSM906396_UCSD.Left_Ventricle.H3K27ac.STL003.sga Left Ventricle|H3K27ac|rep 2 H3K27ac GSM906396
12 GSM908951_UCSD.Left_Ventricle.H3K27ac.STL001.sga Left Ventricle|H3K27ac|rep 3 H3K27ac GSM908951
13 GSM908952_UCSD.Left_Ventricle.H3K27me3.STL001.sga Left Ventricle|H3K27me3|rep 1 H3K27me3 GSM908952
14 GSM910562_UCSD.Left_Ventricle.H3K27me3.STL003.sga Left Ventricle|H3K27me3|rep 2 H3K27me3 GSM910562
15 GSM906402_UCSD.Left_Ventricle.H3K36me3.STL001.sga Left Ventricle|H3K36me3|rep 1 H3K36me3 GSM906402
16 GSM910569_UCSD.Left_Ventricle.H3K36me3.STL003.sga Left Ventricle|H3K36me3|rep 2 H3K36me3 GSM910569
17 GSM906404_UCSD.Left_Ventricle.H3K4me1.STL001.sga Left Ventricle|H3K4me1|rep 1 H3K4me1 GSM906404
18 GSM910575_UCSD.Left_Ventricle.H3K4me1.STL003.sga Left Ventricle|H3K4me1|rep 2 H3K4me1 GSM910575
19 GSM906406_UCSD.Left_Ventricle.H3K4me3.STL001.sga Left Ventricle|H3K4me3|rep 1 H3K4me3 GSM906406
20 GSM910580_UCSD.Left_Ventricle.H3K4me3.STL003.sga Left Ventricle|H3K4me3|rep 2 H3K4me3 GSM910580
21 GSM906409_UCSD.Left_Ventricle.H3K9me3.STL001.sga Left Ventricle|H3K9me3|rep 1 H3K9me3 GSM906409
22 GSM906412_UCSD.Left_Ventricle.H3K9me3.STL003.sga Left Ventricle|H3K9me3|rep 2 H3K9me3 GSM906412
23 GSM906418_UCSD.Left_Ventricle.Input.STL003.sga Left Ventricle|Input|rep 1 Input GSM906418
24 GSM908968_UCSD.Left_Ventricle.Input.STL001.sga Left Ventricle|Input|rep 2 Input GSM908968
25 GSM910557_UCSD.Right_Atrium.H3K27ac.STL003.sga Right Atrium|H3K27ac H3K27ac GSM910557
26 GSM1013144_UCSD.Right_Atrium.H3K36me3.STL003.sga Right Atrium|H3K36me3 H3K36me3 GSM1013144
27 GSM915335_UCSD.Right_Atrium.H3K4me1.STL003.sga Right Atrium|H3K4me1 H3K4me1 GSM915335
28 GSM910587_UCSD.Right_Atrium.H3K9me3.STL003.sga Right Atrium|H3K9me3 H3K9me3 GSM910587
29 GSM906421_UCSD.Right_Atrium.Input.STL003.sga Right Atrium|Input Input GSM906421
30 GSM1013124_UCSD.Right_Ventricle.H3K27ac.STL001.sga Right Ventricle|H3K27ac H3K27ac GSM1013124
31 GSM1013145_UCSD.Right_Ventricle.H3K36me3.STL003.sga Right Ventricle|H3K36me3|rep 1 H3K36me3 GSM1013145
32 GSM1059438_UCSD.Right_Ventricle.H3K36me3.STL001.sga Right Ventricle|H3K36me3|rep 2 H3K36me3 GSM1059438
33 GSM1059445_UCSD.Right_Ventricle.H3K4me1.STL001.sga Right Ventricle|H3K4me1|rep 1 H3K4me1 GSM1059445
34 GSM956022_UCSD.Right_Ventricle.H3K4me1.STL003.sga Right Ventricle|H3K4me1|rep 2 H3K4me1 GSM956022
35 GSM1120357_UCSD.Right_Ventricle.H3K9me3.STL001.sga Right Ventricle|H3K9me3 H3K9me3 GSM1120357
36 GSM1013167_UCSD.Right_Ventricle.Input.STL001.sga Right Ventricle|Input|rep 1 Input GSM1013167
37 GSM915338_UCSD.Right_Ventricle.Input.STL003.sga Right Ventricle|Input|rep 2 Input GSM915338

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027322_UW.Heart.ChromatinAccessibility.STL001.DNase.DS20383.sga Heart|DNase-seq DNase-seq GSM1027322

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files