Hematopoietic stem cells.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM537656_BI.CD34_Cultured_Cells.H3K27me3.cultured_CD34_2_20_09.sga CD34 Cultured Cells|H3K27me3 H3K27me3 GSM537656
2 GSM537655_BI.CD34_Cultured_Cells.H3K36me3.cultured_CD34_2_20_09.sga CD34 Cultured Cells|H3K36me3|rep 1 H3K36me3 GSM537655
3 GSM669955_BI.CD34_Cultured_Cells.H3K36me3.123.sga CD34 Cultured Cells|H3K36me3|rep 2 H3K36me3 GSM669955
4 GSM537628_BI.CD34_Cultured_Cells.H3K4me1.cultured_CD34_2_20_09.sga CD34 Cultured Cells|H3K4me1|rep 1 H3K4me1 GSM537628
5 GSM669907_BI.CD34_Cultured_Cells.H3K4me1.123.sga CD34 Cultured Cells|H3K4me1|rep 2 H3K4me1 GSM669907
6 GSM537629_BI.CD34_Cultured_Cells.H3K4me3.cultured_CD34_2_20_09.sga CD34 Cultured Cells|H3K4me3|rep 1 H3K4me3 GSM537629
7 GSM669943_BI.CD34_Cultured_Cells.H3K4me3.123.sga CD34 Cultured Cells|H3K4me3|rep 2 H3K4me3 GSM669943
8 GSM537653_BI.CD34_Cultured_Cells.H3K9me3.cultured_CD34_2_20_09.sga CD34 Cultured Cells|H3K9me3|rep 1 H3K9me3 GSM537653
9 GSM669995_BI.CD34_Cultured_Cells.H3K9me3.123.sga CD34 Cultured Cells|H3K9me3|rep 2 H3K9me3 GSM669995
10 GSM669929_BI.CD34_Cultured_Cells.Input.123.sga CD34 Cultured Cells|Input WCE GSM669929
11 GSM486704_BI.CD34_Primary_Cells.H3K27me3.CD34_39661.sga CD34 Primary Cells|H3K27me3|rep 1 H3K27me3 GSM486704
12 GSM486706_BI.CD34_Primary_Cells.H3K27me3.CD34_39804.sga CD34 Primary Cells|H3K27me3|rep 2 H3K27me3 GSM486706
13 GSM486705_BI.CD34_Primary_Cells.H3K36me3.CD34_39661.sga CD34 Primary Cells|H3K36me3|rep 1 H3K36me3 GSM486705
14 GSM486714_BI.CD34_Primary_Cells.H3K36me3.CD34_39811.sga CD34 Primary Cells|H3K36me3|rep 2 H3K36me3 GSM486714
15 GSM486707_BI.CD34_Primary_Cells.H3K4me1.CD34_39889.sga CD34 Primary Cells|H3K4me1|rep 1 H3K4me1 GSM486707
16 GSM486708_BI.CD34_Primary_Cells.H3K4me1.CD34_39811.sga CD34 Primary Cells|H3K4me1|rep 2 H3K4me1 GSM486708
17 GSM486709_BI.CD34_Primary_Cells.H3K4me3.CD34_39629.sga CD34 Primary Cells|H3K4me3|rep 1 H3K4me3 GSM486709
18 GSM486711_BI.CD34_Primary_Cells.H3K4me3.CD34_39804.sga CD34 Primary Cells|H3K4me3|rep 2 H3K4me3 GSM486711
19 GSM486710_BI.CD34_Primary_Cells.H3K9me3.CD34_39889.sga CD34 Primary Cells|H3K9me3|rep 1 H3K9me3 GSM486710
20 GSM486712_BI.CD34_Primary_Cells.H3K9me3.CD34_39811.sga CD34 Primary Cells|H3K9me3|rep 2 H3K9me3 GSM486712
21 GSM486702_BI.CD34_Primary_Cells.Input.CD34_39661.sga CD34 Primary Cells|Input|rep 1 WCE GSM486702
22 GSM669961_BI.CD34_Primary_Cells.Input.UW_RO_01492.sga CD34 Primary Cells|Input|rep 2 WCE GSM669961

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

Genome browser viewable files