Fetal lung.

Description

This samples serie was produced as part of the RoadMap Project.

Source

Files downloaded from GEO FTP server: ftp://ftp.ncbi.nlm.nih.gov/pub/geo/DATA/roadmapepigenomics/by_sample/
Input file format: BED

Samples

From Human Feb. 2009 (GRCh37/hg19) Assembly.

ChIP-seq data:

Filename Description Feature GEO-ID
1 GSM621390_BI.Fetal_Lung.H3K27me3.UW_H-22727.sga Fetal Lung|H3K27me3|rep 1 H3K27me3 GSM621390
2 GSM706852_BI.Fetal_Lung.H3K27me3.UW_H22772.sga Fetal Lung|H3K27me3|rep 2 H3K27me3 GSM706852
3 GSM621387_BI.Fetal_Lung.H3K36me3.UW_H-22727.sga Fetal Lung|H3K36me3|rep 1 H3K36me3 GSM621387
4 GSM669912_BI.Fetal_Lung.H3K36me3.UW_H23284.sga Fetal Lung|H3K36me3|rep 2 H3K36me3 GSM669912
5 GSM621429_BI.Fetal_Lung.H3K4me1.UW_H-22727.sga Fetal Lung|H3K4me1|rep 1 H3K4me1 GSM621429
6 GSM669969_BI.Fetal_Lung.H3K4me1.UW_H23266.sga Fetal Lung|H3K4me1|rep 2 H3K4me1 GSM669969
7 GSM706853_BI.Fetal_Lung.H3K4me1.UW_H22772.sga Fetal Lung|H3K4me1|rep 3 H3K4me1 GSM706853
8 GSM621405_BI.Fetal_Lung.H3K4me3.UW_H-22676.sga Fetal Lung|H3K4me3|rep 1 H3K4me3 GSM621405
9 GSM621417_BI.Fetal_Lung.H3K4me3.UW_H-22727.sga Fetal Lung|H3K4me3|rep 2 H3K4me3 GSM621417
10 GSM621400_BI.Fetal_Lung.H3K9ac.UW_H-22727.sga Fetal Lung|H3K9ac|rep 1 H3K9ac GSM621400
11 GSM706854_BI.Fetal_Lung.H3K9ac.UW_H22772.sga Fetal Lung|H3K9ac|rep 2 H3K9ac GSM706854
12 GSM621397_BI.Fetal_Lung.H3K9me3.UW_H-22727.sga Fetal Lung|H3K9me3|rep 1 H3K9me3 GSM621397
13 GSM669939_BI.Fetal_Lung.H3K9me3.UW_H23266.sga Fetal Lung|H3K9me3|rep 2 H3K9me3 GSM669939
14 GSM669956_BI.Fetal_Lung.Input.UW_H23266.sga Fetal Lung|Input|rep 1 WCE GSM669956
15 GSM669993_BI.Fetal_Lung.Input.UW_H23284.sga Fetal Lung|Input|rep 2 WCE GSM669993
16 GSM706855_BI.Fetal_Lung.Input.UW_H22772.sga Fetal Lung|Input|rep 3 WCE GSM706855
17 GSM521866_UCSD.IMR90.H2AK5ac.YL20.sga IMR90|H2AK5ac|rep 1 H2AK5ac GSM521866
18 GSM521868_UCSD.IMR90.H2AK5ac.YL60.sga IMR90|H2AK5ac|rep 2 H2AK5ac GSM521868
19 GSM818012_UCSD.IMR90.H2AK9ac.AY6.sga IMR90|H2AK9ac|rep 1 H2AK9ac GSM818012
20 GSM818013_UCSD.IMR90.H2AK9ac.AY7.sga IMR90|H2AK9ac|rep 2 H2AK9ac GSM818013
21 GSM818007_UCSD.IMR90.H2A.Z.AY4.sga IMR90|H2A|rep 1 H2A.Z GSM818007
22 GSM818008_UCSD.IMR90.H2A.Z.AY5.sga IMR90|H2A|rep 2 H2A.Z GSM818008
23 GSM521869_UCSD.IMR90.H2BK120ac.YL06.sga IMR90|H2BK120ac|rep 1 H2BK120ac GSM521869
24 GSM521870_UCSD.IMR90.H2BK120ac.SK15.sga IMR90|H2BK120ac|rep 2 H2BK120ac GSM521870
25 GSM521871_UCSD.IMR90.H2BK12ac.YL18.sga IMR90|H2BK12ac|rep 1 H2BK12ac GSM521871
26 GSM521873_UCSD.IMR90.H2BK12ac.YL68.sga IMR90|H2BK12ac|rep 2 H2BK12ac GSM521873
27 GSM521874_UCSD.IMR90.H2BK12ac.YL138.sga IMR90|H2BK12ac|rep 3 H2BK12ac GSM521874
28 GSM521875_UCSD.IMR90.H2BK15ac.YL19.sga IMR90|H2BK15ac|rep 1 H2BK15ac GSM521875
29 GSM521877_UCSD.IMR90.H2BK15ac.YL69.sga IMR90|H2BK15ac|rep 2 H2BK15ac GSM521877
30 GSM521878_UCSD.IMR90.H2BK15ac.SK42.sga IMR90|H2BK15ac|rep 3 H2BK15ac GSM521878
31 GSM521879_UCSD.IMR90.H2BK20ac.YL07.sga IMR90|H2BK20ac|rep 1 H2BK20ac GSM521879
32 GSM521880_UCSD.IMR90.H2BK20ac.SK14.sga IMR90|H2BK20ac|rep 2 H2BK20ac GSM521880
33 GSM818017_UCSD.IMR90.H2BK5ac.YL281.sga IMR90|H2BK5ac|rep 1 H2BK5ac GSM818017
34 GSM832837_UCSD.IMR90.H2BK5ac.LL229.sga IMR90|H2BK5ac|rep 2 H2BK5ac GSM832837
35 GSM832838_UCSD.IMR90.H2BK5ac.SK10.sga IMR90|H2BK5ac|rep 3 H2BK5ac GSM832838
36 GSM521881_UCSD.IMR90.H3K14ac.YL15.sga IMR90|H3K14ac|rep 1 H3K14ac GSM521881
37 GSM521883_UCSD.IMR90.H3K14ac.SK17.sga IMR90|H3K14ac|rep 2 H3K14ac GSM521883
38 GSM469965_UCSD.IMR90.H3K18ac.LL230.sga IMR90|H3K18ac|rep 1 H3K18ac GSM469965
39 GSM521884_UCSD.IMR90.H3K18ac.SK09.sga IMR90|H3K18ac|rep 2 H3K18ac GSM521884
40 GSM521885_UCSD.IMR90.H3K23ac.YL09.sga IMR90|H3K23ac|rep 1 H3K23ac GSM521885
41 GSM521886_UCSD.IMR90.H3K23ac.SK18.sga IMR90|H3K23ac|rep 2 H3K23ac GSM521886
42 GSM469966_UCSD.IMR90.H3K27ac.LL231.sga IMR90|H3K27ac|rep 1 H3K27ac GSM469966
43 GSM469967_UCSD.IMR90.H3K27ac.LL235.sga IMR90|H3K27ac|rep 2 H3K27ac GSM469967
44 GSM521887_UCSD.IMR90.H3K27ac.YL58.sga IMR90|H3K27ac|rep 3 H3K27ac GSM521887
45 GSM469968_UCSD.IMR90.H3K27me3.LL223.sga IMR90|H3K27me3|rep 1 H3K27me3 GSM469968
46 GSM521889_UCSD.IMR90.H3K27me3.SK05.sga IMR90|H3K27me3|rep 2 H3K27me3 GSM521889
47 GSM521890_UCSD.IMR90.H3K36me3.LL225.sga IMR90|H3K36me3|rep 1 H3K36me3 GSM521890
48 GSM521892_UCSD.IMR90.H3K36me3.YL67.sga IMR90|H3K36me3|rep 2 H3K36me3 GSM521892
49 GSM521893_UCSD.IMR90.H3K4ac.LL239.sga IMR90|H3K4ac|rep 1 H3K4ac GSM521893
50 GSM521894_UCSD.IMR90.H3K4ac.SK16.sga IMR90|H3K4ac|rep 2 H3K4ac GSM521894
51 GSM521895_UCSD.IMR90.H3K4me1.LL222.sga IMR90|H3K4me1|rep 1 H3K4me1 GSM521895
52 GSM521897_UCSD.IMR90.H3K4me1.SK04.sga IMR90|H3K4me1|rep 2 H3K4me1 GSM521897
53 GSM521898_UCSD.IMR90.H3K4me1.SYL133.sga IMR90|H3K4me1|rep 3 H3K4me1 GSM521898
54 GSM521899_UCSD.IMR90.H3K4me2.LL232.sga IMR90|H3K4me2|rep 1 H3K4me2 GSM521899
55 GSM521900_UCSD.IMR90.H3K4me2.SK07.sga IMR90|H3K4me2|rep 2 H3K4me2 GSM521900
56 GSM469970_UCSD.IMR90.H3K4me3.LL221.sga IMR90|H3K4me3|rep 1 H3K4me3 GSM469970
57 GSM521901_UCSD.IMR90.H3K4me3.SK03.sga IMR90|H3K4me3|rep 2 H3K4me3 GSM521901
58 GSM521902_UCSD.IMR90.H3K56ac.YL05.sga IMR90|H3K56ac|rep 1 H3K56ac GSM521902
59 GSM521903_UCSD.IMR90.H3K56ac.YL61.sga IMR90|H3K56ac|rep 2 H3K56ac GSM521903
60 GSM521904_UCSD.IMR90.H3K79me1.YL16.sga IMR90|H3K79me1|rep 1 H3K79me1 GSM521904
61 GSM521906_UCSD.IMR90.H3K79me1.SK11.sga IMR90|H3K79me1|rep 2 H3K79me1 GSM521906
62 GSM521907_UCSD.IMR90.H3K79me1.YL103.sga IMR90|H3K79me1|rep 3 H3K79me1 GSM521907
63 GSM521908_UCSD.IMR90.H3K79me1.YL145.sga IMR90|H3K79me1|rep 4 H3K79me1 GSM521908
64 GSM521909_UCSD.IMR90.H3K79me2.LL238.sga IMR90|H3K79me2|rep 1 H3K79me2 GSM521909
65 GSM521911_UCSD.IMR90.H3K79me2.SK43.sga IMR90|H3K79me2|rep 2 H3K79me2 GSM521911
66 GSM469973_UCSD.IMR90.H3K9ac.LL233.sga IMR90|H3K9ac|rep 1 H3K9ac GSM469973
67 GSM521912_UCSD.IMR90.H3K9ac.SK46.sga IMR90|H3K9ac|rep 2 H3K9ac GSM521912
68 GSM752986_UCSD.IMR90.H3K9me1.LL237.sga IMR90|H3K9me1|rep 1 H3K9me1 GSM752986
69 GSM752987_UCSD.IMR90.H3K9me1.SK12.sga IMR90|H3K9me1|rep 2 H3K9me1 GSM752987
70 GSM469974_UCSD.IMR90.H3K9me3.LL224.sga IMR90|H3K9me3|rep 1 H3K9me3 GSM469974
71 GSM521913_UCSD.IMR90.H3K9me3.SK06.sga IMR90|H3K9me3|rep 2 H3K9me3 GSM521913
72 GSM521914_UCSD.IMR90.H3K9me3.YL104.sga IMR90|H3K9me3|rep 3 H3K9me3 GSM521914
73 GSM521915_UCSD.IMR90.H4K20me1.YL21.sga IMR90|H4K20me1|rep 1 H4K20me1 GSM521915
74 GSM521917_UCSD.IMR90.H4K20me1.YL59.sga IMR90|H4K20me1|rep 2 H4K20me1 GSM521917
75 GSM469975_UCSD.IMR90.H4K5ac.LL234.sga IMR90|H4K5ac|rep 1 H4K5ac GSM469975
76 GSM521918_UCSD.IMR90.H4K5ac.SK08.sga IMR90|H4K5ac|rep 2 H4K5ac GSM521918
77 GSM521919_UCSD.IMR90.H4K8ac.YL17.sga IMR90|H4K8ac|rep 1 H4K8ac GSM521919
78 GSM521921_UCSD.IMR90.H4K8ac.YL57.sga IMR90|H4K8ac|rep 2 H4K8ac GSM521921
79 GSM521922_UCSD.IMR90.H4K8ac.SK45.sga IMR90|H4K8ac|rep 3 H4K8ac GSM521922
80 GSM521923_UCSD.IMR90.H4K8ac.YL142.sga IMR90|H4K8ac|rep 4 H4K8ac GSM521923
81 GSM521924_UCSD.IMR90.H4K91ac.YL08.sga IMR90|H4K91ac|rep 1 H4K91ac GSM521924
82 GSM521925_UCSD.IMR90.H4K91ac.SK49.sga IMR90|H4K91ac|rep 2 H4K91ac GSM521925
83 GSM521926_UCSD.IMR90.Input.LL-I1.sga IMR90|Input|rep 1 Input GSM521926
84 GSM521927_UCSD.IMR90.Input.LL-I2.sga IMR90|Input|rep 2 Input GSM521927
85 GSM521928_UCSD.IMR90.Input.SK-I1.sga IMR90|Input|rep 3 Input GSM521928
86 GSM521929_UCSD.IMR90.Input.SK-I2.sga IMR90|Input|rep 4 Input GSM521929
87 GSM521930_UCSD.IMR90.Input.IMR90-05-I1.sga IMR90|Input|rep 5 Input GSM521930
88 GSM521931_UCSD.IMR90.Input.IMR90-06-I1.sga IMR90|Input|rep 6 Input GSM521931
89 GSM521932_UCSD.IMR90.Input.IMR90-07-I1.sga IMR90|Input|rep 7 Input GSM521932
90 GSM521933_UCSD.IMR90.Input.SK-I3.sga IMR90|Input|rep 8 Input GSM521933
91 GSM959044_UCSD.IMR90.Input.AK106.sga IMR90|Input|rep 9 Input GSM959044

DNase FAIRE data:

Filename Description Feature GEO-ID
1 GSM1027345_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24626.DNase.DS21334.sga Fetal Lung Left|DNase-seq|rep 1 DNase-seq GSM1027345
2 GSM774237_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23640.DS18170.sga Fetal Lung Left|DNase-seq|rep 10 DNase-seq GSM774237
3 GSM817168_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24005.DS17959.sga Fetal Lung Left|DNase-seq|rep 11 DNase-seq GSM817168
4 GSM817175_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24089.DS18421.sga Fetal Lung Left|DNase-seq|rep 12 DNase-seq GSM817175
5 GSM817185_UW.Fetal_Lung_Left.ChromatinAccessibility.H-24111.DS18487.sga Fetal Lung Left|DNase-seq|rep 13 DNase-seq GSM817185
6 GSM665808_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23435.DS15637.sga Fetal Lung Left|DNase-seq|rep 2 DNase-seq GSM665808
7 GSM665828_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23604.DS16570.sga Fetal Lung Left|DNase-seq|rep 3 DNase-seq GSM665828
8 GSM701512_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23833.DS17464.sga Fetal Lung Left|DNase-seq|rep 4 DNase-seq GSM701512
9 GSM701524_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23887.DS17674.sga Fetal Lung Left|DNase-seq|rep 5 DNase-seq GSM701524
10 GSM701527_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23914.DS17739.sga Fetal Lung Left|DNase-seq|rep 6 DNase-seq GSM701527
11 GSM701534_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23964.DS17835.sga Fetal Lung Left|DNase-seq|rep 7 DNase-seq GSM701534
12 GSM774207_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23744.DS17105.sga Fetal Lung Left|DNase-seq|rep 8 DNase-seq GSM774207
13 GSM774211_UW.Fetal_Lung_Left.ChromatinAccessibility.H-23758.DS17154.sga Fetal Lung Left|DNase-seq|rep 9 DNase-seq GSM774211
14 GSM1027344_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24626.DNase.DS21328.sga Fetal Lung Right|DNase-seq|rep 1 DNase-seq GSM1027344
15 GSM817174_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24089.DS18418.sga Fetal Lung Right|DNase-seq|rep 10 DNase-seq GSM817174
16 GSM817186_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24111.DS18492.sga Fetal Lung Right|DNase-seq|rep 11 DNase-seq GSM817186
17 GSM665807_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23435.DS15632.sga Fetal Lung Right|DNase-seq|rep 2 DNase-seq GSM665807
18 GSM665827_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23604.DS16566.sga Fetal Lung Right|DNase-seq|rep 3 DNase-seq GSM665827
19 GSM665832_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23640.DS16790.sga Fetal Lung Right|DNase-seq|rep 4 DNase-seq GSM665832
20 GSM701523_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23887.DS17670.sga Fetal Lung Right|DNase-seq|rep 5 DNase-seq GSM701523
21 GSM774206_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23744.DS17101.sga Fetal Lung Right|DNase-seq|rep 6 DNase-seq GSM774206
22 GSM774227_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23964.DS17831.sga Fetal Lung Right|DNase-seq|rep 7 DNase-seq GSM774227
23 GSM774231_UW.Fetal_Lung_Right.ChromatinAccessibility.H-24005.DS17954.sga Fetal Lung Right|DNase-seq|rep 8 DNase-seq GSM774231
24 GSM817164_UW.Fetal_Lung_Right.ChromatinAccessibility.H-23758.DS17162.sga Fetal Lung Right|DNase-seq|rep 9 DNase-seq GSM817164
25 GSM723025_UW.Fetal_Lung.Digital_Genomic_Footprinting.H-23266.DGF.DS14724.sga Fetal Lung|DNase-HS DNase-HS GSM723025
26 GSM530656_UW.Fetal_Lung.ChromatinAccessibility.H-22676.DS12646.sga Fetal Lung|DNase-seq|rep 1 DNase-seq GSM530656
27 GSM595930_UW.Fetal_Lung.ChromatinAccessibility.H-23365.DS15227.sga Fetal Lung|DNase-seq|rep 10 DNase-seq GSM595930
28 GSM665805_UW.Fetal_Lung.ChromatinAccessibility.H-23399.DS15461.sga Fetal Lung|DNase-seq|rep 11 DNase-seq GSM665805
29 GSM665806_UW.Fetal_Lung.ChromatinAccessibility.H-23419.DS15573.sga Fetal Lung|DNase-seq|rep 12 DNase-seq GSM665806
30 GSM530662_UW.Fetal_Lung.ChromatinAccessibility.H-22727.DS12817.sga Fetal Lung|DNase-seq|rep 2 DNase-seq GSM530662
31 GSM595915_UW.Fetal_Lung.ChromatinAccessibility.H-22934B.DS13507.sga Fetal Lung|DNase-seq|rep 3 DNase-seq GSM595915
32 GSM595916_UW.Fetal_Lung.ChromatinAccessibility.H-23090.DS13985.sga Fetal Lung|DNase-seq|rep 4 DNase-seq GSM595916
33 GSM595921_UW.Fetal_Lung.ChromatinAccessibility.H-23247.DS14666.sga Fetal Lung|DNase-seq|rep 5 DNase-seq GSM595921
34 GSM595924_UW.Fetal_Lung.ChromatinAccessibility.H-23266.DS14724.sga Fetal Lung|DNase-seq|rep 6 DNase-seq GSM595924
35 GSM595925_UW.Fetal_Lung.ChromatinAccessibility.H-23266.DS14751.sga Fetal Lung|DNase-seq|rep 7 DNase-seq GSM595925
36 GSM595927_UW.Fetal_Lung.ChromatinAccessibility.H-23284.DS14809.sga Fetal Lung|DNase-seq|rep 8 DNase-seq GSM595927
37 GSM595929_UW.Fetal_Lung.ChromatinAccessibility.H-23284.DS14820.sga Fetal Lung|DNase-seq|rep 9 DNase-seq GSM595929
38 GSM723024_UW.IMR90.Digital_Genomic_Footprinting.DGF.DS13219.sga IMR90|DNase-HS DNase-HS GSM723024
39 GSM468792_UW.IMR90.ChromatinAccessibility.DS11759.sga IMR90|DNase-seq|rep 1 DNase-seq GSM468792
40 GSM468801_UW.IMR90.ChromatinAccessibility.DS11764.sga IMR90|DNase-seq|rep 2 DNase-seq GSM468801
41 GSM530665_UW.IMR90.ChromatinAccessibility.DS13219.sga IMR90|DNase-seq|rep 3 DNase-seq GSM530665
42 GSM530666_UW.IMR90.ChromatinAccessibility.DS13229.sga IMR90|DNase-seq|rep 4 DNase-seq GSM530666

Technical Notes

BED files were downloaded from the FTP and converted in SGA format using bed2sga (ChIP-seq).

References

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